Wall clock time and date at job start Tue Mar 31 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 C 1.52997 * 114.17330 * 139.67127 * 15 14 13 17 17 N 1.46506 * 109.47257 * 91.15867 * 16 15 14 18 18 C 1.34774 * 119.99990 * 180.02562 * 17 16 15 19 19 O 1.21606 * 119.99958 * 0.02562 * 18 17 16 20 20 C 1.47296 * 120.00044 * 180.02562 * 18 17 16 21 21 F 1.35097 * 119.99686 * 359.97438 * 20 18 17 22 22 C 1.33113 * 120.00036 * 179.97438 * 20 18 17 23 23 C 1.51446 * 126.34448 * 359.68237 * 22 20 18 24 24 C 1.54275 * 106.85474 * 180.24162 * 23 22 20 25 25 C 1.54984 * 103.65528 * 23.48742 * 24 23 22 26 26 C 1.51846 * 126.34039 * 179.97438 * 22 20 18 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 1.08996 * 109.47675 * 211.16095 * 16 15 14 36 36 H 1.09002 * 109.47041 * 331.16398 * 16 15 14 37 37 H 0.96997 * 119.99763 * 0.02562 * 17 16 15 38 38 H 1.08993 * 109.98534 * 299.73576 * 23 22 20 39 39 H 1.09004 * 109.97658 * 61.03440 * 23 22 20 40 40 H 1.08999 * 110.79897 * 264.86557 * 24 23 22 41 41 H 1.09000 * 110.42894 * 141.93120 * 24 23 22 42 42 H 1.09007 * 110.83134 * 204.48528 * 25 24 23 43 43 H 1.09001 * 110.83633 * 80.91747 * 25 24 23 44 44 H 1.09001 * 110.44177 * 274.92751 * 26 22 20 45 45 H 1.09003 * 110.44028 * 37.32266 * 26 22 20 46 46 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 47 47 H 1.08997 * 113.47905 * 23.93586 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 6 1.6862 -8.8630 -1.7726 17 7 2.6548 -9.4769 -2.6843 18 6 2.2436 -10.3813 -3.5951 19 8 1.0685 -10.6873 -3.6604 20 6 3.2176 -10.9989 -4.5113 21 9 4.5229 -10.6585 -4.4390 22 6 2.8115 -11.8925 -5.4105 23 6 1.3926 -12.3821 -5.6119 24 6 1.4332 -13.4106 -6.7611 25 6 2.9014 -13.9068 -6.7564 26 6 3.6863 -12.6143 -6.4202 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 1.2072 -9.6388 -1.1753 36 1 0.9305 -8.3306 -2.3502 37 1 3.5920 -9.2325 -2.6324 38 1 1.0284 -12.8540 -4.6995 39 1 0.7459 -11.5479 -5.8840 40 1 1.1920 -12.9372 -7.7128 41 1 0.7497 -14.2350 -6.5581 42 1 3.1849 -14.2882 -7.7374 43 1 3.0524 -14.6637 -5.9867 44 1 3.8177 -12.0050 -7.3144 45 1 4.6537 -12.8575 -5.9808 46 1 1.6894 -7.6711 1.2299 47 1 0.4553 -7.2469 -0.0325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481622138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:19 Heat of formation + Delta-G solvation = -74.253756 kcal Electronic energy + Delta-G solvation = -28238.003575 eV Core-core repulsion = 23950.246694 eV Total energy + Delta-G solvation = -4287.756881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.18321 -40.53379 -39.80908 -38.27981 -37.73557 -35.08528 -33.86897 -31.86352 -31.34916 -30.83619 -29.29324 -27.85903 -25.90739 -25.75947 -24.69396 -22.78084 -21.57491 -21.21582 -20.08816 -19.37107 -19.02172 -18.07451 -17.79398 -16.90437 -16.59817 -16.22525 -16.04535 -15.76883 -15.33924 -15.28504 -15.17311 -14.60960 -14.48796 -14.22607 -13.83962 -13.77025 -13.63363 -13.33810 -13.03563 -12.84948 -12.64958 -12.55477 -12.25722 -11.96504 -11.68152 -11.61099 -11.57766 -11.49994 -11.35929 -11.09062 -11.05339 -10.76504 -10.54005 -10.42843 -10.20919 -10.17448 -9.54311 -9.47223 -9.14336 -8.80042 -8.19135 -7.94054 -6.39600 -3.80375 0.75363 2.64850 2.71952 3.21433 3.26741 3.31290 3.74657 3.89941 3.92545 3.97171 4.15696 4.23560 4.29299 4.53353 4.59241 4.62696 4.78580 4.94267 4.95038 5.03356 5.07788 5.20156 5.27089 5.28272 5.35600 5.37532 5.44128 5.48307 5.49644 5.54188 5.62196 5.65696 5.68480 5.71587 5.73692 5.84263 5.92629 5.98297 6.02096 6.19688 6.28534 6.53224 7.10749 7.17502 7.56805 7.73941 8.07981 8.64463 9.20491 9.56868 10.09488 10.78214 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.001643 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.133891 B =17037.928176 C =17271.059734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.008 3.992 13 N -0.440 5.440 14 C 0.009 3.991 15 C -0.133 4.133 16 C 0.132 3.868 17 N -0.718 5.718 18 C 0.549 3.451 19 O -0.523 6.523 20 C -0.013 4.013 21 F -0.136 7.136 22 C -0.072 4.072 23 C -0.080 4.080 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.097 4.097 27 C 0.006 3.994 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.407 0.593 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -28.025 -11.285 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.124 4.124 13 N -0.161 5.161 14 C -0.120 4.120 15 C -0.152 4.152 16 C 0.008 3.992 17 N -0.369 5.369 18 C 0.335 3.665 19 O -0.401 6.401 20 C -0.036 4.036 21 F -0.115 7.115 22 C -0.075 4.075 23 C -0.117 4.117 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.134 4.134 27 C -0.124 4.124 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.243 0.757 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.775 -27.757 -10.844 29.853 hybrid contribution -0.217 1.096 -0.384 1.181 sum 1.558 -26.662 -11.228 28.971 Atomic orbital electron populations 1.69605 1.05914 1.28198 1.50751 1.25250 0.95637 0.99671 0.97402 0.85916 0.78749 0.80489 0.79053 1.19953 1.20987 1.19905 1.19649 0.93327 0.82264 1.47623 0.88025 1.41864 1.09125 1.04578 1.64846 1.19668 0.88389 0.84387 0.84431 1.90522 1.13669 1.86973 1.54714 1.22512 0.94681 0.93103 1.02073 1.68820 1.30699 1.00094 1.16507 1.23970 1.03271 0.92520 0.92253 1.23032 1.00738 0.94464 0.96967 1.21442 0.91172 0.95714 0.90862 1.45887 1.12815 1.42623 1.35529 1.18137 0.87868 0.79806 0.80668 1.90830 1.16504 1.62206 1.70545 1.18825 0.78649 1.03603 1.02473 1.91485 1.32679 1.91443 1.95878 1.23068 0.99210 0.92294 0.92962 1.21174 0.91844 0.99188 0.99478 1.22487 0.96801 0.98665 0.98696 1.22535 0.94998 0.96450 1.02066 1.21530 0.98110 0.96296 0.97467 1.23834 0.97094 0.91818 0.99682 0.91870 0.77556 0.89335 0.92241 0.91280 0.89327 0.87208 0.90675 0.90841 0.75738 0.89094 0.89159 0.91053 0.90834 0.90673 0.90929 0.89037 0.90105 0.89304 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 10 C 0.45 10.79 7.85 -10.98 -0.09 10.70 16 11 O -0.58 -16.12 16.01 5.54 0.09 -16.03 16 12 C 0.01 0.15 5.30 -4.98 -0.03 0.12 16 13 N -0.44 -7.18 5.82 -246.11 -1.43 -8.61 16 14 C 0.01 0.12 7.28 -7.56 -0.06 0.07 16 15 C -0.13 -1.36 4.09 -90.10 -0.37 -1.73 16 16 C 0.13 1.24 5.58 -4.04 -0.02 1.22 16 17 N -0.72 -6.78 5.55 -61.43 -0.34 -7.13 16 18 C 0.55 5.95 7.77 -12.58 -0.10 5.86 16 19 O -0.52 -6.77 14.12 5.27 0.07 -6.69 16 20 C -0.01 -0.13 7.42 -37.68 -0.28 -0.41 16 21 F -0.14 -1.32 16.52 2.25 0.04 -1.28 16 22 C -0.07 -0.60 6.16 -100.20 -0.62 -1.22 16 23 C -0.08 -0.62 4.81 -26.85 -0.13 -0.75 16 24 C -0.13 -0.69 6.88 -25.02 -0.17 -0.87 16 25 C -0.12 -0.59 6.94 -24.68 -0.17 -0.77 16 26 C -0.10 -0.59 6.45 -26.31 -0.17 -0.76 16 27 C 0.01 0.06 7.26 -7.55 -0.05 0.01 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 30 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 31 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 32 H 0.07 0.91 7.15 -51.93 -0.37 0.54 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 37 H 0.41 3.32 8.02 -40.82 -0.33 2.99 16 38 H 0.09 0.78 7.67 -51.93 -0.40 0.38 16 39 H 0.09 0.79 7.68 -51.93 -0.40 0.40 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -33.55 392.58 -9.68 -43.23 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.17 Total: 9.69 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.49 Total: 3.35 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.11 Total: -54.47 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.16 Total: -22.72 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.55 -9.68 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481622138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.024 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds