Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47228 * 180.27673 * 3 2 1 5 5 H 1.48500 * 109.47000 * 300.27558 * 3 2 1 6 6 H 1.48493 * 109.46907 * 60.27449 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47048 * 179.97438 * 12 10 9 14 14 C 1.47479 * 111.00243 * 265.96775 * 13 12 10 15 15 C 1.53504 * 87.93384 * 221.29906 * 14 13 12 16 16 C 1.47482 * 110.99697 * 169.99814 * 13 12 10 17 17 H 1.08996 * 113.47769 * 23.88101 * 16 13 12 18 18 C 1.53000 * 113.47834 * 253.46852 * 16 13 12 19 19 N 1.46503 * 109.46768 * 55.00006 * 18 16 13 20 20 C 1.34779 * 119.99658 * 179.97438 * 19 18 16 21 21 O 1.21609 * 120.00390 * 0.02562 * 20 19 18 22 22 C 1.47300 * 119.99687 * 180.02562 * 20 19 18 23 23 F 1.35093 * 119.99982 * 0.02562 * 22 20 19 24 24 C 1.33122 * 119.99685 * 180.02562 * 22 20 19 25 25 C 1.51446 * 126.34205 * 359.69398 * 24 22 20 26 26 C 1.54279 * 106.84852 * 180.24195 * 25 24 22 27 27 C 1.54976 * 103.66059 * 23.48096 * 26 25 24 28 28 C 1.51835 * 126.33775 * 180.02562 * 24 22 20 29 29 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 30 30 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 32 32 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 33 33 H 1.09000 * 113.47271 * 336.06711 * 14 13 12 34 34 H 1.08999 * 113.47592 * 106.53092 * 14 13 12 35 35 H 1.09005 * 114.17330 * 272.37607 * 15 14 13 36 36 H 1.09004 * 114.17230 * 139.67190 * 15 14 13 37 37 H 1.08994 * 109.47146 * 175.00382 * 18 16 13 38 38 H 1.09004 * 109.47008 * 295.00736 * 18 16 13 39 39 H 0.96999 * 120.00234 * 0.02562 * 19 18 16 40 40 H 1.09004 * 109.98101 * 299.72537 * 25 24 22 41 41 H 1.08995 * 109.99028 * 61.02543 * 25 24 22 42 42 H 1.08997 * 110.79328 * 264.85085 * 26 25 24 43 43 H 1.08998 * 110.42560 * 141.93341 * 26 25 24 44 44 H 1.09003 * 110.83075 * 204.49358 * 27 26 25 45 45 H 1.08991 * 110.83600 * 80.91841 * 27 26 25 46 46 H 1.09003 * 110.44310 * 274.92710 * 28 24 22 47 47 H 1.09004 * 110.44522 * 37.32475 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 -0.0068 5 1 1.8843 2.3993 -1.2091 6 1 1.8944 2.3935 1.2158 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 7 2.1984 -5.9795 -0.0183 14 6 2.4630 -6.4405 -1.3939 15 6 2.4086 -7.8796 -0.8628 16 6 1.5121 -7.2629 0.2201 17 1 0.4555 -7.2466 -0.0470 18 6 1.7604 -7.8368 1.6165 19 7 1.3924 -6.8410 2.6261 20 6 1.5272 -7.1280 3.9361 21 8 1.9548 -8.2133 4.2800 22 6 1.1567 -6.1270 4.9512 23 9 0.6813 -4.9216 4.5692 24 6 1.2904 -6.4103 6.2451 25 6 1.7994 -7.7107 6.8312 26 6 1.7628 -7.5542 8.3656 27 6 0.6991 -6.4509 8.5957 28 6 0.9540 -5.4920 7.4065 29 1 -0.4850 0.8400 0.0040 30 1 0.3533 -2.3906 -0.0021 31 1 0.6202 -4.9229 0.8804 32 1 0.6140 -4.9186 -0.8996 33 1 1.6603 -6.2048 -2.0927 34 1 3.4457 -6.1522 -1.7670 35 1 3.3625 -8.2550 -0.4921 36 1 1.8950 -8.5796 -1.5220 37 1 1.1563 -8.7336 1.7535 38 1 2.8154 -8.0895 1.7232 39 1 1.0511 -5.9755 2.3519 40 1 1.1562 -8.5351 6.5233 41 1 2.8223 -7.8928 6.5016 42 1 2.7335 -7.2356 8.7453 43 1 1.4542 -8.4878 8.8359 44 1 0.8663 -5.9434 9.5458 45 1 -0.3072 -6.8668 8.5491 46 1 1.7927 -4.8306 7.6241 47 1 0.0591 -4.9104 7.1853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483644432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = -72.269634 kcal Electronic energy + Delta-G solvation = -29718.405880 eV Core-core repulsion = 25430.735037 eV Total energy + Delta-G solvation = -4287.670843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.81387 -40.54758 -39.55274 -38.01422 -37.72806 -34.60477 -33.89515 -31.55307 -31.36140 -30.68442 -29.05174 -28.67008 -25.84731 -25.52910 -23.77289 -23.16881 -21.32380 -20.94122 -19.91065 -19.29255 -19.02701 -17.90735 -17.83235 -16.63621 -16.33355 -16.07168 -15.95185 -15.61054 -15.40134 -15.12324 -14.74668 -14.53610 -14.41918 -13.91323 -13.77194 -13.61281 -13.51148 -13.40836 -12.82422 -12.62920 -12.45313 -12.38215 -12.00390 -11.69539 -11.61768 -11.56012 -11.41819 -11.37629 -11.29038 -11.08820 -10.90589 -10.87056 -10.58071 -10.33849 -10.21487 -9.92400 -9.50525 -9.24679 -8.87195 -8.81466 -8.22295 -7.95543 -6.41112 -3.81632 1.05197 2.90971 3.03588 3.16624 3.27204 3.34599 3.85776 3.89342 4.04712 4.17564 4.26722 4.39881 4.43638 4.70403 4.75535 4.88865 4.94712 4.97952 5.05050 5.17680 5.19014 5.26731 5.31863 5.35217 5.40804 5.54235 5.58102 5.59794 5.62314 5.70013 5.74522 5.78973 5.81377 5.85600 5.92311 5.97167 6.06826 6.13995 6.21796 6.27817 6.34042 6.51338 7.12820 7.41119 7.56100 8.02545 8.06573 8.62343 9.19226 9.54698 10.06911 10.76770 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.003329 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.253945 B = 8408.016835 C =11106.741062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.572 6.572 12 C 0.006 3.994 13 N -0.433 5.433 14 C 0.005 3.995 15 C -0.132 4.132 16 C 0.002 3.998 17 H 0.083 0.917 18 C 0.142 3.858 19 N -0.711 5.711 20 C 0.550 3.450 21 O -0.529 6.529 22 C -0.008 4.008 23 F -0.131 7.131 24 C -0.079 4.079 25 C -0.077 4.077 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.097 4.097 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 -17.074 9.628 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.455 6.455 12 C -0.126 4.126 13 N -0.156 5.156 14 C -0.124 4.124 15 C -0.170 4.170 16 C -0.108 4.108 17 H 0.101 0.899 18 C 0.018 3.982 19 N -0.362 5.362 20 C 0.337 3.663 21 O -0.408 6.408 22 C -0.030 4.030 23 F -0.110 7.110 24 C -0.082 4.082 25 C -0.114 4.114 26 C -0.166 4.166 27 C -0.160 4.160 28 C -0.134 4.134 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.243 0.757 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.336 -17.381 10.253 20.224 hybrid contribution -1.366 1.654 -0.826 2.299 sum -2.702 -15.727 9.427 18.534 Atomic orbital electron populations 1.69614 1.05916 1.28008 1.50823 1.25246 0.95627 0.99669 0.97399 0.85816 0.79746 0.81204 0.77696 1.19222 1.20788 1.20731 1.19736 0.93356 0.82176 1.47367 0.87922 1.41873 1.09105 1.04585 1.64745 1.19584 0.88382 0.84260 0.84707 1.90536 1.13558 1.86856 1.54560 1.22582 0.94769 0.93627 1.01605 1.68864 1.30127 0.99299 1.17267 1.23755 1.03274 0.93797 0.91593 1.23154 1.00320 0.96678 0.96868 1.23801 0.98473 0.93443 0.95123 0.89867 1.21374 1.01487 0.90498 0.84831 1.45833 1.65628 1.19533 1.05226 1.18133 0.78795 0.86809 0.82587 1.90790 1.46163 1.22997 1.80853 1.18877 1.08611 0.83132 0.92401 1.91532 1.86105 1.41673 1.91716 1.22996 0.94205 0.98769 0.92213 1.21134 1.02654 0.93808 0.93804 1.22480 0.99421 0.99111 0.95583 1.22515 0.99511 0.96342 0.97593 1.21510 1.02673 0.97078 0.92140 0.91960 0.77599 0.90205 0.91952 0.91338 0.89120 0.88504 0.90370 0.90968 0.90444 0.75679 0.89285 0.89296 0.91128 0.91002 0.90776 0.91024 0.89057 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.45 10.57 7.85 -10.98 -0.09 10.48 16 11 O -0.57 -15.82 16.01 5.55 0.09 -15.73 16 12 C 0.01 0.11 5.05 -4.98 -0.03 0.08 16 13 N -0.43 -6.87 5.39 -237.96 -1.28 -8.15 16 14 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 15 C -0.13 -1.34 8.00 -26.20 -0.21 -1.55 16 16 C 0.00 0.02 3.23 -71.43 -0.23 -0.21 16 17 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 18 C 0.14 1.74 5.81 -4.04 -0.02 1.71 16 19 N -0.71 -10.04 5.46 -61.42 -0.34 -10.38 16 20 C 0.55 8.21 7.77 -12.58 -0.10 8.11 16 21 O -0.53 -8.40 14.12 5.27 0.07 -8.33 16 22 C -0.01 -0.11 7.42 -37.68 -0.28 -0.39 16 23 F -0.13 -2.06 16.52 2.25 0.04 -2.02 16 24 C -0.08 -0.95 6.16 -100.20 -0.62 -1.57 16 25 C -0.08 -0.82 4.82 -26.85 -0.13 -0.94 16 26 C -0.13 -1.01 6.88 -25.02 -0.17 -1.18 16 27 C -0.12 -0.93 6.94 -24.70 -0.17 -1.10 16 28 C -0.10 -0.95 6.44 -26.34 -0.17 -1.12 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 31 H 0.08 1.25 6.27 -51.93 -0.33 0.92 16 32 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 33 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 39 H 0.41 5.97 5.77 -40.82 -0.24 5.74 16 40 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 41 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.17 388.45 -9.42 -42.59 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.99 Total: 13.93 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.51 Total: 4.34 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.95 Total: -56.83 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.16 Total: -24.06 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.17 -9.42 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483644432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.678 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds