Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47228 * 180.27673 * 3 2 1 5 5 H 1.48500 * 109.47000 * 300.27558 * 3 2 1 6 6 H 1.48493 * 109.46907 * 60.27449 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47048 * 179.97438 * 12 10 9 14 14 C 1.47479 * 111.00243 * 265.96775 * 13 12 10 15 15 C 1.53504 * 87.93384 * 221.29906 * 14 13 12 16 16 C 1.47482 * 110.99697 * 169.99814 * 13 12 10 17 17 H 1.08996 * 113.47769 * 23.88101 * 16 13 12 18 18 C 1.53000 * 113.47834 * 253.46852 * 16 13 12 19 19 N 1.46503 * 109.46768 * 55.00006 * 18 16 13 20 20 C 1.34779 * 119.99658 * 179.97438 * 19 18 16 21 21 O 1.21609 * 120.00390 * 0.02562 * 20 19 18 22 22 C 1.47300 * 119.99687 * 180.02562 * 20 19 18 23 23 F 1.35093 * 119.99982 * 0.02562 * 22 20 19 24 24 C 1.33122 * 119.99685 * 180.02562 * 22 20 19 25 25 C 1.51446 * 126.34205 * 359.69398 * 24 22 20 26 26 C 1.54279 * 106.84852 * 180.24195 * 25 24 22 27 27 C 1.54976 * 103.66059 * 23.48096 * 26 25 24 28 28 C 1.51835 * 126.33775 * 180.02562 * 24 22 20 29 29 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 30 30 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 32 32 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 33 33 H 1.09000 * 113.47271 * 336.06711 * 14 13 12 34 34 H 1.08999 * 113.47592 * 106.53092 * 14 13 12 35 35 H 1.09005 * 114.17330 * 272.37607 * 15 14 13 36 36 H 1.09004 * 114.17230 * 139.67190 * 15 14 13 37 37 H 1.08994 * 109.47146 * 175.00382 * 18 16 13 38 38 H 1.09004 * 109.47008 * 295.00736 * 18 16 13 39 39 H 0.96999 * 120.00234 * 0.02562 * 19 18 16 40 40 H 1.09004 * 109.98101 * 299.72537 * 25 24 22 41 41 H 1.08995 * 109.99028 * 61.02543 * 25 24 22 42 42 H 1.08997 * 110.79328 * 264.85085 * 26 25 24 43 43 H 1.08998 * 110.42560 * 141.93341 * 26 25 24 44 44 H 1.09003 * 110.83075 * 204.49358 * 27 26 25 45 45 H 1.08991 * 110.83600 * 80.91841 * 27 26 25 46 46 H 1.09003 * 110.44310 * 274.92710 * 28 24 22 47 47 H 1.09004 * 110.44522 * 37.32475 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 -0.0068 5 1 1.8843 2.3993 -1.2091 6 1 1.8944 2.3935 1.2158 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 7 2.1984 -5.9795 -0.0183 14 6 2.4630 -6.4405 -1.3939 15 6 2.4086 -7.8796 -0.8628 16 6 1.5121 -7.2629 0.2201 17 1 0.4555 -7.2466 -0.0470 18 6 1.7604 -7.8368 1.6165 19 7 1.3924 -6.8410 2.6261 20 6 1.5272 -7.1280 3.9361 21 8 1.9548 -8.2133 4.2800 22 6 1.1567 -6.1270 4.9512 23 9 0.6813 -4.9216 4.5692 24 6 1.2904 -6.4103 6.2451 25 6 1.7994 -7.7107 6.8312 26 6 1.7628 -7.5542 8.3656 27 6 0.6991 -6.4509 8.5957 28 6 0.9540 -5.4920 7.4065 29 1 -0.4850 0.8400 0.0040 30 1 0.3533 -2.3906 -0.0021 31 1 0.6202 -4.9229 0.8804 32 1 0.6140 -4.9186 -0.8996 33 1 1.6603 -6.2048 -2.0927 34 1 3.4457 -6.1522 -1.7670 35 1 3.3625 -8.2550 -0.4921 36 1 1.8950 -8.5796 -1.5220 37 1 1.1563 -8.7336 1.7535 38 1 2.8154 -8.0895 1.7232 39 1 1.0511 -5.9755 2.3519 40 1 1.1562 -8.5351 6.5233 41 1 2.8223 -7.8928 6.5016 42 1 2.7335 -7.2356 8.7453 43 1 1.4542 -8.4878 8.8359 44 1 0.8663 -5.9434 9.5458 45 1 -0.3072 -6.8668 8.5491 46 1 1.7927 -4.8306 7.6241 47 1 0.0591 -4.9104 7.1853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483644432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -96.554302 kcal Electronic energy + Delta-G solvation = -29719.458942 eV Core-core repulsion = 25430.735037 eV Total energy + Delta-G solvation = -4288.723905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.94225 -41.66712 -40.67890 -39.61985 -38.81454 -35.97841 -35.66855 -33.34379 -32.48508 -32.04586 -29.83874 -29.67466 -27.56806 -26.44231 -25.39419 -24.14755 -22.31028 -21.70678 -21.12552 -20.88130 -20.04259 -19.93673 -18.90746 -17.80856 -17.53638 -17.33010 -17.14247 -16.77700 -16.49327 -16.45107 -16.21990 -15.83305 -15.78292 -15.53585 -15.11501 -14.81954 -14.47908 -14.32787 -14.20444 -13.99392 -13.56871 -13.53549 -13.25675 -13.08622 -12.94051 -12.63621 -12.57120 -12.45516 -12.36859 -12.15416 -12.08225 -12.03501 -11.98609 -11.64340 -11.51424 -11.50961 -11.01216 -10.40812 -10.33828 -10.02103 -9.86516 -9.73939 -8.48121 -5.96587 0.01378 1.34386 1.39502 1.53635 1.83291 1.94492 2.03703 2.27011 2.75372 3.07093 3.17417 3.23531 3.36867 3.53858 3.65921 3.76681 3.96587 3.99898 4.10339 4.11213 4.22880 4.27125 4.30783 4.38859 4.41159 4.46813 4.59171 4.61449 4.77958 4.80194 4.83997 4.89324 4.98550 4.99447 5.02125 5.10115 5.16681 5.19963 5.26035 5.35004 5.39342 5.41183 5.43528 5.90674 6.08734 6.27946 6.59289 6.89874 7.12098 7.54921 8.11717 8.69490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.003329 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.253945 B = 8408.016835 C =11106.741062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.618 6.618 12 C 0.021 3.979 13 N -0.472 5.472 14 C -0.004 4.004 15 C -0.109 4.109 16 C 0.011 3.989 17 H 0.109 0.891 18 C 0.140 3.860 19 N -0.713 5.713 20 C 0.547 3.453 21 O -0.545 6.545 22 C -0.045 4.045 23 F -0.146 7.146 24 C -0.063 4.063 25 C -0.079 4.079 26 C -0.122 4.122 27 C -0.115 4.115 28 C -0.103 4.103 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -18.108 10.423 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.093 0.907 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.111 4.111 13 N -0.195 5.195 14 C -0.133 4.133 15 C -0.147 4.147 16 C -0.098 4.098 17 H 0.127 0.873 18 C 0.017 3.983 19 N -0.363 5.363 20 C 0.334 3.666 21 O -0.426 6.426 22 C -0.067 4.067 23 F -0.125 7.125 24 C -0.067 4.067 25 C -0.115 4.115 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.539 -18.432 11.036 21.633 hybrid contribution -0.965 1.929 -1.034 2.392 sum -3.504 -16.503 10.002 19.613 Atomic orbital electron populations 1.69667 1.06729 1.29198 1.50415 1.26000 0.96548 1.02270 0.96323 0.84911 0.77982 0.77267 0.78426 1.20006 1.19395 1.19554 1.19648 0.92537 0.84092 1.49881 0.90684 1.41942 1.09226 1.04692 1.65373 1.20745 0.88243 0.85864 0.82241 1.90498 1.15929 1.87878 1.56044 1.22434 0.94472 0.90612 1.03540 1.68821 1.31102 1.00429 1.19139 1.23861 1.02496 0.96057 0.90880 1.23094 1.00284 0.95274 0.96065 1.23890 0.99873 0.90971 0.95063 0.87347 1.21510 1.01077 0.90865 0.84826 1.45926 1.65325 1.19647 1.05419 1.18278 0.78575 0.86778 0.82979 1.90765 1.47176 1.23559 1.81126 1.18998 1.11451 0.83081 0.93218 1.91486 1.86630 1.42424 1.91942 1.23487 0.91236 0.99767 0.92176 1.21204 1.01594 0.92801 0.95948 1.22488 1.00112 1.00170 0.93173 1.22531 0.99730 0.95624 0.97316 1.21679 1.02791 0.97360 0.92163 0.91296 0.77066 0.88585 0.89353 0.89824 0.91621 0.88715 0.86739 0.88963 0.91805 0.76153 0.89647 0.90499 0.90328 0.89258 0.88730 0.90442 0.88460 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.44 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.99 5.29 -306.97 -1.62 -31.61 16 10 C 0.44 21.51 7.85 87.66 0.69 22.19 16 11 O -0.62 -35.62 16.01 -3.07 -0.05 -35.67 16 12 C 0.02 0.72 5.05 85.56 0.43 1.15 16 13 N -0.47 -14.68 5.39 -906.76 -4.89 -19.56 16 14 C 0.00 -0.11 7.71 83.57 0.64 0.53 16 15 C -0.11 -1.94 8.00 30.94 0.25 -1.70 16 16 C 0.01 0.24 3.23 42.19 0.14 0.38 16 17 H 0.11 1.81 7.91 -2.39 -0.02 1.79 16 18 C 0.14 3.27 5.81 86.38 0.50 3.77 16 19 N -0.71 -20.12 5.46 -466.50 -2.55 -22.67 16 20 C 0.55 16.58 7.77 86.63 0.67 17.26 16 21 O -0.55 -17.50 14.12 -4.06 -0.06 -17.55 16 22 C -0.05 -1.33 7.42 23.51 0.17 -1.16 16 23 F -0.15 -4.73 16.52 44.97 0.74 -3.99 16 24 C -0.06 -1.53 6.16 -17.00 -0.10 -1.63 16 25 C -0.08 -1.61 4.82 30.52 0.15 -1.46 16 26 C -0.12 -1.64 6.88 31.70 0.22 -1.43 16 27 C -0.11 -1.47 6.94 31.91 0.22 -1.24 16 28 C -0.10 -1.90 6.44 30.85 0.20 -1.70 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 31 H 0.10 2.93 6.27 -2.38 -0.01 2.91 16 32 H 0.09 2.53 7.30 -2.38 -0.02 2.51 16 33 H 0.08 1.88 7.42 -2.39 -0.02 1.86 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.75 7.94 -2.38 -0.02 1.73 16 36 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 39 H 0.40 11.90 5.77 -92.71 -0.53 11.37 16 40 H 0.09 1.83 7.67 -2.39 -0.02 1.81 16 41 H 0.08 1.78 7.68 -2.39 -0.02 1.76 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -74.72 388.45 -0.90 -75.63 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.26 Total: 43.05 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 5.46 Total: 16.37 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -8.77 Total: -123.56 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.11 Total: -53.22 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.74 Total: -3.99 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.72 -0.90 -75.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483644432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.928 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds