Wall clock time and date at job start Tue Mar 31 2020 23:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46495 * 120.00514 * 270.00370 * 8 7 6 10 10 C 1.34783 * 119.99676 * 90.00251 * 8 7 6 11 11 O 1.21284 * 119.99848 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99817 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.46929 * 180.02562 * 12 10 8 14 14 C 1.50696 * 109.47029 * 180.02562 * 13 12 10 15 15 C 1.33641 * 122.75043 * 124.73522 * 14 13 12 16 16 S 1.76194 * 107.92411 * 179.97438 * 15 14 13 17 17 C 1.70971 * 90.28404 * 0.27544 * 16 15 14 18 18 N 1.29033 * 110.16692 * 359.83671 * 17 16 15 19 19 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 1.09000 * 109.47174 * 89.99725 * 9 8 7 40 40 H 1.08995 * 109.47682 * 209.99929 * 9 8 7 41 41 H 1.09006 * 109.47015 * 329.99981 * 9 8 7 42 42 H 1.08997 * 109.47588 * 300.00175 * 12 10 8 43 43 H 1.08995 * 109.46786 * 60.00846 * 12 10 8 44 44 H 1.08997 * 109.46962 * 300.00355 * 13 12 10 45 45 H 1.08999 * 109.46993 * 59.99948 * 13 12 10 46 46 H 1.08002 * 126.03521 * 0.04011 * 15 14 13 47 47 H 1.07999 * 124.91794 * 179.84222 * 17 16 15 48 48 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 1.9348 -2.8478 2.5566 8 7 1.4459 -4.2289 2.5568 9 6 0.1176 -4.5357 3.0932 10 6 2.2181 -5.2172 2.0634 11 8 3.3180 -4.9632 1.6197 12 6 1.7155 -6.6379 2.0642 13 6 2.7778 -7.5550 1.4549 14 6 2.2749 -8.9756 1.4551 15 6 2.2130 -9.7208 0.3474 16 16 1.5733 -11.3011 0.7921 17 6 1.4451 -10.8001 2.4217 18 7 1.8542 -9.5827 2.5464 19 7 3.5050 -0.7218 1.2490 20 6 4.1901 0.3552 1.7447 21 1 3.6505 1.2032 2.1400 22 6 5.5782 0.3572 1.7392 23 7 6.2359 -0.6760 1.2570 24 14 6.5129 1.8261 2.4161 25 1 6.1596 2.0219 3.8451 26 1 7.9728 1.5823 2.2956 27 1 6.1494 3.0421 1.6451 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.4437 -2.1650 1.1597 36 1 1.9645 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6461 38 1 1.5001 -2.3088 3.3983 39 1 -0.6214 -4.4669 2.2950 40 1 0.1159 -5.5453 3.5039 41 1 -0.1300 -3.8230 3.8800 42 1 1.5103 -6.9502 3.0881 43 1 0.8005 -6.6998 1.4752 44 1 2.9833 -7.2428 0.4310 45 1 3.6926 -7.4930 2.0442 46 1 2.5046 -9.4095 -0.6448 47 1 1.0753 -11.4138 3.2298 48 1 3.9897 -1.4834 0.8939 49 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485441355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:39 Heat of formation + Delta-G solvation = 8.430032 kcal Electronic energy + Delta-G solvation = -27297.263867 eV Core-core repulsion = 23579.305601 eV Total energy + Delta-G solvation = -3717.958266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29615 -39.52304 -37.29802 -35.35085 -33.64660 -32.94591 -31.49329 -30.14433 -29.38390 -26.90302 -26.41598 -25.94523 -25.09696 -23.87679 -22.67276 -21.06773 -19.81885 -19.15789 -18.79958 -18.19107 -17.11475 -16.79140 -16.08334 -15.89771 -15.45250 -14.96013 -14.80405 -14.10217 -13.92402 -13.83037 -13.58882 -13.53943 -13.39243 -13.28112 -12.86481 -12.67743 -12.51557 -12.38920 -11.94662 -11.92910 -11.70021 -11.56995 -11.55674 -11.17415 -11.03919 -10.83078 -10.69970 -10.40807 -10.21986 -10.15553 -9.97024 -9.96259 -9.82870 -9.77206 -9.47069 -9.33753 -9.08002 -8.76962 -8.36496 -6.80905 -5.63096 -2.91266 0.42514 1.09352 1.42517 2.49926 2.89991 3.24398 3.49692 3.54375 3.55636 3.92374 4.56343 4.68360 4.80835 4.93537 4.98159 5.01616 5.14671 5.30483 5.34885 5.45387 5.46784 5.51468 5.59066 5.65390 5.71248 5.76432 5.78265 5.88528 5.93572 5.98853 6.08938 6.09196 6.26411 6.31236 6.38637 6.46507 6.53715 6.64679 6.79291 6.84052 6.90751 6.94281 7.23398 7.41541 7.42493 7.62266 7.80606 8.45918 8.54397 9.65262 10.25348 10.60413 11.58611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002294 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.595466 B =12201.825723 C =13278.512451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.186 3.814 5 H 0.044 0.956 6 C -0.135 4.135 7 C 0.119 3.881 8 N -0.619 5.619 9 C 0.079 3.921 10 C 0.505 3.495 11 O -0.522 6.522 12 C -0.128 4.128 13 C -0.031 4.031 14 C 0.070 3.930 15 C -0.251 4.251 16 S 0.107 5.893 17 C 0.022 3.978 18 N -0.465 5.465 19 N -0.721 5.721 20 C -0.232 4.232 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.927 5.927 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.287 1.287 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.179 0.821 47 H 0.199 0.801 48 H 0.386 0.614 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 -19.550 0.614 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.197 4.197 4 C 0.075 3.925 5 H 0.062 0.938 6 C -0.174 4.174 7 C -0.003 4.003 8 N -0.352 5.352 9 C -0.065 4.065 10 C 0.293 3.707 11 O -0.398 6.398 12 C -0.169 4.169 13 C -0.071 4.071 14 C -0.061 4.061 15 C -0.390 4.390 16 S 0.358 5.642 17 C -0.276 4.276 18 N -0.179 5.179 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.575 5.575 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.214 1.214 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.197 0.803 47 H 0.216 0.784 48 H 0.221 0.779 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.188 -19.967 0.495 25.709 hybrid contribution 0.778 1.375 0.254 1.600 sum -15.410 -18.592 0.749 24.160 Atomic orbital electron populations 1.21920 0.97293 1.00520 1.00541 1.21786 0.93170 0.97622 1.00774 1.21830 1.04289 0.94909 0.98658 1.20191 0.86096 0.91463 0.94789 0.93754 1.22204 0.99723 0.97591 0.97885 1.21593 1.02391 0.78751 0.97560 1.47976 1.17057 1.08453 1.61760 1.21766 0.84153 1.01737 0.98824 1.20612 0.85189 0.86959 0.77973 1.90810 1.20107 1.83849 1.45004 1.21572 0.99744 0.91847 1.03714 1.19968 0.98248 0.85445 1.03469 1.20447 1.00262 0.98606 0.86828 1.26930 1.11115 0.96452 1.04497 1.84050 1.58756 1.15137 1.06214 1.28421 1.03694 0.95362 1.00157 1.66134 1.12686 1.07917 1.31131 1.42487 0.98938 1.20886 1.73856 1.19135 0.88769 0.96177 1.32286 0.91249 1.24726 0.96525 0.97563 1.02175 1.69676 1.06766 1.29640 1.51433 0.86390 0.79221 0.82554 0.78752 1.21460 1.21875 1.21429 0.93399 0.93968 0.93292 0.92334 0.89487 0.95349 0.94223 0.92359 0.92015 0.88233 0.91315 0.92933 0.91341 0.91098 0.88361 0.89434 0.89212 0.89029 0.80340 0.78434 0.77939 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.85 37.16 0.33 -1.78 16 2 C -0.11 -2.04 2.69 -90.62 -0.24 -2.28 16 3 C -0.14 -2.68 8.26 37.16 0.31 -2.38 16 4 C 0.19 3.65 2.02 -67.93 -0.14 3.51 16 5 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 6 C -0.13 -2.30 4.86 -26.73 -0.13 -2.43 16 7 C 0.12 2.01 5.34 -4.04 -0.02 1.99 16 8 N -0.62 -8.74 2.87 -181.58 -0.52 -9.26 16 9 C 0.08 0.75 10.29 59.84 0.62 1.36 16 10 C 0.51 7.83 7.67 -10.98 -0.08 7.75 16 11 O -0.52 -10.68 15.56 5.55 0.09 -10.59 16 12 C -0.13 -1.46 4.15 -27.88 -0.12 -1.57 16 13 C -0.03 -0.36 5.00 -27.88 -0.14 -0.50 16 14 C 0.07 0.74 6.08 -84.23 -0.51 0.22 16 15 C -0.25 -2.19 11.07 29.12 0.32 -1.86 16 16 S 0.11 0.72 23.22 -107.50 -2.50 -1.77 16 17 C 0.02 0.17 12.23 51.59 0.63 0.80 16 18 N -0.46 -4.90 10.34 -11.90 -0.12 -5.02 16 19 N -0.72 -17.89 4.46 -53.43 -0.24 -18.13 16 20 C -0.23 -6.31 7.55 -15.06 -0.11 -6.43 16 21 H 0.07 1.83 7.38 -52.49 -0.39 1.44 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 24 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.98 5.99 -51.93 -0.31 1.67 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.85 6.17 -51.93 -0.32 0.53 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 2.15 7.03 -51.94 -0.37 1.79 16 38 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 41 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 42 H 0.10 1.04 7.34 -51.93 -0.38 0.66 16 43 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 44 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16 45 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 46 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.39 10.69 7.80 -40.82 -0.32 10.37 16 49 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -33.56 405.90 -9.05 -42.60 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.18 Total: 10.39 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.61 Total: -4.09 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.16 Total: -60.34 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.56 -9.05 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485441355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.033 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds