Wall clock time and date at job start Tue Mar 31 2020 23:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46495 * 120.00514 * 270.00370 * 8 7 6 10 10 C 1.34783 * 119.99676 * 90.00251 * 8 7 6 11 11 O 1.21284 * 119.99848 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99817 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.46929 * 180.02562 * 12 10 8 14 14 C 1.50696 * 109.47029 * 180.02562 * 13 12 10 15 15 C 1.33641 * 122.75043 * 124.73522 * 14 13 12 16 16 S 1.76194 * 107.92411 * 179.97438 * 15 14 13 17 17 C 1.70971 * 90.28404 * 0.27544 * 16 15 14 18 18 N 1.29033 * 110.16692 * 359.83671 * 17 16 15 19 19 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 1.09000 * 109.47174 * 89.99725 * 9 8 7 40 40 H 1.08995 * 109.47682 * 209.99929 * 9 8 7 41 41 H 1.09006 * 109.47015 * 329.99981 * 9 8 7 42 42 H 1.08997 * 109.47588 * 300.00175 * 12 10 8 43 43 H 1.08995 * 109.46786 * 60.00846 * 12 10 8 44 44 H 1.08997 * 109.46962 * 300.00355 * 13 12 10 45 45 H 1.08999 * 109.46993 * 59.99948 * 13 12 10 46 46 H 1.08002 * 126.03521 * 0.04011 * 15 14 13 47 47 H 1.07999 * 124.91794 * 179.84222 * 17 16 15 48 48 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 1.9348 -2.8478 2.5566 8 7 1.4459 -4.2289 2.5568 9 6 0.1176 -4.5357 3.0932 10 6 2.2181 -5.2172 2.0634 11 8 3.3180 -4.9632 1.6197 12 6 1.7155 -6.6379 2.0642 13 6 2.7778 -7.5550 1.4549 14 6 2.2749 -8.9756 1.4551 15 6 2.2130 -9.7208 0.3474 16 16 1.5733 -11.3011 0.7921 17 6 1.4451 -10.8001 2.4217 18 7 1.8542 -9.5827 2.5464 19 7 3.5050 -0.7218 1.2490 20 6 4.1901 0.3552 1.7447 21 1 3.6505 1.2032 2.1400 22 6 5.5782 0.3572 1.7392 23 7 6.2359 -0.6760 1.2570 24 14 6.5129 1.8261 2.4161 25 1 6.1596 2.0219 3.8451 26 1 7.9728 1.5823 2.2956 27 1 6.1494 3.0421 1.6451 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.4437 -2.1650 1.1597 36 1 1.9645 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6461 38 1 1.5001 -2.3088 3.3983 39 1 -0.6214 -4.4669 2.2950 40 1 0.1159 -5.5453 3.5039 41 1 -0.1300 -3.8230 3.8800 42 1 1.5103 -6.9502 3.0881 43 1 0.8005 -6.6998 1.4752 44 1 2.9833 -7.2428 0.4310 45 1 3.6926 -7.4930 2.0442 46 1 2.5046 -9.4095 -0.6448 47 1 1.0753 -11.4138 3.2298 48 1 3.9897 -1.4834 0.8939 49 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485441355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:38 Heat of formation + Delta-G solvation = -13.302664 kcal Electronic energy + Delta-G solvation = -27298.206267 eV Core-core repulsion = 23579.305601 eV Total energy + Delta-G solvation = -3718.900667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19242 -40.54803 -38.88480 -36.62495 -34.89817 -34.58984 -32.92828 -31.57123 -30.62565 -28.10629 -27.48475 -27.21473 -26.16244 -25.20940 -24.21998 -22.50012 -20.72600 -20.50537 -19.97425 -19.10251 -18.86638 -17.91754 -17.16236 -16.90390 -16.78075 -16.41541 -15.77969 -15.68855 -15.33014 -15.12021 -15.03018 -14.60346 -14.49586 -14.15420 -14.06849 -13.88350 -13.73509 -13.52106 -13.34029 -13.03022 -12.95597 -12.81090 -12.73760 -12.70717 -12.49301 -12.44505 -12.20737 -12.02734 -11.98562 -11.72062 -11.62965 -11.38240 -11.16477 -10.82928 -10.71502 -10.59231 -10.39444 -9.73103 -9.59242 -8.87962 -7.84015 -5.10887 -0.18273 0.51863 0.81548 1.45719 1.48679 1.54350 1.69332 1.78821 2.14018 2.60473 3.27912 3.47032 3.63660 3.93849 3.94234 4.01001 4.09982 4.17096 4.26024 4.31824 4.37087 4.45367 4.46894 4.53550 4.56689 4.62403 4.69699 4.74603 4.77311 4.83139 4.93976 4.96359 4.99481 5.02786 5.06097 5.17150 5.21015 5.24109 5.30834 5.39013 5.45047 5.58590 5.64714 5.70445 5.80230 6.35915 6.48369 6.79077 7.27502 7.41270 8.20029 8.42514 9.39435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002294 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.595466 B =12201.825723 C =13278.512451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.136 4.136 4 C 0.180 3.820 5 H 0.049 0.951 6 C -0.118 4.118 7 C 0.125 3.875 8 N -0.616 5.616 9 C 0.071 3.929 10 C 0.497 3.503 11 O -0.586 6.586 12 C -0.110 4.110 13 C -0.028 4.028 14 C 0.052 3.948 15 C -0.263 4.263 16 S 0.159 5.841 17 C 0.020 3.980 18 N -0.498 5.498 19 N -0.732 5.732 20 C -0.211 4.211 21 H 0.079 0.921 22 C -0.085 4.085 23 N -0.973 5.973 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.303 1.303 27 H -0.278 1.278 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.189 0.811 47 H 0.230 0.770 48 H 0.367 0.633 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 -20.308 1.221 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.193 4.193 4 C 0.071 3.929 5 H 0.067 0.933 6 C -0.157 4.157 7 C 0.002 3.998 8 N -0.348 5.348 9 C -0.070 4.070 10 C 0.286 3.714 11 O -0.466 6.466 12 C -0.150 4.150 13 C -0.069 4.069 14 C -0.080 4.080 15 C -0.403 4.403 16 S 0.412 5.588 17 C -0.277 4.277 18 N -0.212 5.212 19 N -0.370 5.370 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.276 4.276 23 N -0.625 5.625 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.230 1.230 27 H -0.204 1.204 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.206 0.794 47 H 0.246 0.754 48 H 0.198 0.802 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.428 -20.711 1.128 29.112 hybrid contribution 1.924 1.527 0.050 2.457 sum -18.504 -19.185 1.178 26.680 Atomic orbital electron populations 1.21812 0.93426 1.02046 1.01947 1.21666 0.96315 0.96341 0.98697 1.21747 1.01427 0.96035 1.00121 1.20473 0.83149 0.93560 0.95711 0.93263 1.22044 1.01506 0.95288 0.96827 1.21303 0.99298 0.80914 0.98268 1.48063 1.18712 1.06931 1.61093 1.22112 0.81572 1.03410 0.99937 1.21425 0.84433 0.88724 0.76818 1.90788 1.22968 1.84933 1.47898 1.21489 1.00163 0.88492 1.04814 1.19803 0.97506 0.87135 1.02422 1.20217 1.01851 0.98098 0.87786 1.27167 1.10675 0.97772 1.04638 1.83880 1.57204 1.12832 1.04930 1.28980 1.02306 0.94754 1.01686 1.66114 1.14263 1.09416 1.31450 1.42700 1.01270 1.19554 1.73515 1.19500 0.88931 0.96324 1.29573 0.90269 1.25494 0.97787 1.00232 1.04118 1.69873 1.06155 1.32050 1.54446 0.85364 0.77163 0.79751 0.78496 1.20471 1.23029 1.20415 0.92077 0.92510 0.91714 0.94293 0.93790 0.93238 0.93381 0.88498 0.94769 0.93869 0.89292 0.90799 0.89322 0.89619 0.87099 0.86877 0.90103 0.91801 0.79391 0.75387 0.80168 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.85 71.98 0.64 -2.77 16 2 C -0.11 -3.84 2.69 -10.79 -0.03 -3.87 16 3 C -0.14 -5.08 8.26 71.98 0.59 -4.49 16 4 C 0.18 7.03 2.02 44.99 0.09 7.12 16 5 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 6 C -0.12 -3.95 4.86 30.60 0.15 -3.80 16 7 C 0.13 4.28 5.34 86.38 0.46 4.74 16 8 N -0.62 -16.99 2.87 -846.77 -2.43 -19.43 16 9 C 0.07 1.11 10.29 127.77 1.31 2.43 16 10 C 0.50 15.89 7.67 87.66 0.67 16.56 16 11 O -0.59 -26.02 15.56 -3.04 -0.05 -26.06 16 12 C -0.11 -2.45 4.15 29.85 0.12 -2.32 16 13 C -0.03 -0.69 5.00 29.85 0.15 -0.54 16 14 C 0.05 1.08 6.08 41.52 0.25 1.33 16 15 C -0.26 -4.34 11.07 66.78 0.74 -3.60 16 16 S 0.16 1.79 23.22 -56.49 -1.31 0.47 16 17 C 0.02 0.26 12.23 130.65 1.60 1.86 16 18 N -0.50 -9.91 10.34 -191.56 -1.98 -11.89 16 19 N -0.73 -37.80 4.46 -322.94 -1.44 -39.24 16 20 C -0.21 -11.77 7.55 84.03 0.63 -11.14 16 21 H 0.08 4.19 7.38 -2.91 -0.02 4.16 16 22 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 23 N -0.97 -63.57 13.06 21.65 0.28 -63.29 16 24 Si 0.96 48.15 29.55 68.60 2.03 50.17 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.44 6.32 -2.39 -0.02 1.43 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 2.01 5.99 -2.39 -0.01 2.00 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 2.51 6.17 -2.39 -0.01 2.49 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.99 7.03 -2.39 -0.02 1.97 16 38 H 0.09 2.63 7.89 -2.39 -0.02 2.61 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.07 6.44 -2.39 -0.02 1.05 16 41 H 0.09 1.13 7.89 -2.38 -0.02 1.11 16 42 H 0.11 2.22 7.34 -2.39 -0.02 2.20 16 43 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 44 H 0.08 2.07 7.98 -2.39 -0.02 2.05 16 45 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 46 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 47 H 0.23 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.37 21.73 7.80 -92.71 -0.72 21.00 16 49 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -79.64 405.90 3.17 -76.48 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.21 Total: 35.89 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 7.85 Total: -3.10 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -5.57 Total: -133.85 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.47 kcal Total: -79.64 3.17 -76.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485441355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.174 kcal (2) G-P(sol) polarization free energy of solvation -79.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds