Wall clock time and date at job start Tue Mar 31 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91378 * 2 1 4 4 C 1.31788 * 117.12109 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74497 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46975 * 90.02946 * 5 4 3 7 7 O 1.21281 * 119.99993 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00192 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47286 * 324.99496 * 9 8 6 11 11 C 1.52999 * 109.47100 * 204.99245 * 9 8 6 12 12 N 1.46497 * 109.46867 * 55.00428 * 11 9 8 13 13 C 1.36944 * 120.00260 * 179.97438 * 12 11 9 14 14 H 1.08007 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00335 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99938 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47091 * 89.99621 * 17 15 13 19 19 H 1.48500 * 109.47046 * 209.99996 * 17 15 13 20 20 H 1.48499 * 109.46990 * 329.99819 * 17 15 13 21 21 C 1.53004 * 109.47127 * 84.99830 * 9 8 6 22 22 C 1.52993 * 109.47406 * 60.00109 * 21 9 8 23 23 C 1.53008 * 109.46966 * 180.02562 * 21 9 8 24 24 C 1.53003 * 109.46970 * 299.99823 * 21 9 8 25 25 C 1.33635 * 114.50125 * 0.23259 * 4 3 2 26 26 C 1.50704 * 126.03761 * 179.76901 * 25 4 3 27 27 S 1.70976 * 124.91910 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47262 * 90.00374 * 1 2 3 29 29 H 1.09001 * 109.46936 * 210.00127 * 1 2 3 30 30 H 1.08999 * 109.46821 * 329.99618 * 1 2 3 31 31 H 1.08994 * 109.46790 * 210.02346 * 5 4 3 32 32 H 1.08997 * 109.47305 * 330.02787 * 5 4 3 33 33 H 0.97000 * 119.99842 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47480 * 174.99555 * 11 9 8 35 35 H 1.09003 * 109.47689 * 295.00080 * 11 9 8 36 36 H 0.96996 * 120.00497 * 359.97438 * 12 11 9 37 37 H 0.96997 * 120.00231 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47515 * 59.99708 * 22 21 9 39 39 H 1.08996 * 109.47285 * 180.02562 * 22 21 9 40 40 H 1.08999 * 109.47038 * 300.00048 * 22 21 9 41 41 H 1.08996 * 109.46791 * 59.99807 * 23 21 9 42 42 H 1.08996 * 109.46849 * 179.97438 * 23 21 9 43 43 H 1.09002 * 109.46706 * 299.99527 * 23 21 9 44 44 H 1.08999 * 109.46967 * 60.00262 * 24 21 9 45 45 H 1.09000 * 109.47131 * 180.02562 * 24 21 9 46 46 H 1.09007 * 109.47052 * 300.00502 * 24 21 9 47 47 H 1.08999 * 109.47044 * 89.99566 * 26 25 4 48 48 H 1.08998 * 109.47284 * 210.00460 * 26 25 4 49 49 H 1.09004 * 109.46843 * 329.99947 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.8573 2.4069 1.4207 7 8 4.3447 1.8086 2.3428 8 7 5.7181 3.4144 1.6666 9 6 6.0352 3.7863 3.0476 10 1 5.1501 3.6585 3.6707 11 6 6.4831 5.2486 3.0918 12 7 5.4538 6.0933 2.4811 13 6 5.6353 7.4487 2.4072 14 1 6.5372 7.8949 2.7997 15 6 4.6602 8.2490 1.8280 16 7 3.5613 7.7052 1.3492 17 14 4.9075 10.0979 1.7279 18 1 5.5909 10.4377 0.4541 19 1 3.5880 10.7772 1.7784 20 1 5.7403 10.5485 2.8719 21 6 7.1609 2.8921 3.5710 22 6 8.4034 3.0717 2.6965 23 6 7.4916 3.2802 5.0136 24 6 6.7130 1.4298 3.5267 25 6 3.9354 -0.4006 -0.0039 26 6 5.3575 -0.8994 -0.0094 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 5.4431 1.7221 -0.5137 32 1 4.0905 2.8790 -0.5141 33 1 6.1277 3.8931 0.9291 34 1 6.6336 5.5514 4.1281 35 1 7.4176 5.3593 2.5416 36 1 4.6437 5.6927 2.1289 37 1 2.8801 8.2644 0.9442 38 1 8.7225 4.1134 2.7279 39 1 9.2052 2.4343 3.0691 40 1 8.1675 2.7949 1.6689 41 1 6.6063 3.1520 5.6363 42 1 8.2933 2.6429 5.3866 43 1 7.8106 4.3221 5.0455 44 1 6.4772 1.1530 2.4992 45 1 7.5149 0.7927 3.9000 46 1 5.8278 1.3019 4.1498 47 1 5.7034 -1.0222 1.0169 48 1 5.4043 -1.8580 -0.5260 49 1 5.9934 -0.1784 -0.5233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486402975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:00 Heat of formation + Delta-G solvation = 1.688457 kcal Electronic energy + Delta-G solvation = -28426.749684 eV Core-core repulsion = 24708.499081 eV Total energy + Delta-G solvation = -3718.250603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43063 -39.47604 -37.25502 -34.40031 -33.85780 -33.12844 -31.09933 -30.51352 -29.70127 -27.66251 -27.11532 -26.55572 -25.15235 -23.76918 -22.90552 -21.46036 -20.40298 -18.84737 -18.50335 -17.95606 -17.21033 -16.68030 -15.84865 -15.47906 -14.99190 -14.93896 -14.55262 -13.97712 -13.87945 -13.76845 -13.59709 -13.49660 -13.35596 -13.18145 -13.06308 -12.84378 -12.68300 -12.29741 -12.25520 -12.08033 -11.99833 -11.78805 -11.67411 -11.35826 -11.18317 -11.15461 -11.01909 -10.80331 -10.69509 -10.47873 -10.20673 -9.90875 -9.72067 -9.55948 -9.49846 -9.18052 -8.87666 -8.55246 -8.49486 -6.92381 -5.75547 -3.05428 0.71390 1.31681 1.69741 2.75729 3.03168 3.43114 3.48530 3.50526 3.66684 4.09667 4.57800 4.76611 4.93495 4.94970 4.97846 5.03280 5.12573 5.20838 5.21963 5.29068 5.34953 5.41636 5.55964 5.60044 5.61175 5.68380 5.75363 5.79355 5.81442 5.90503 5.91947 5.95241 6.05819 6.11331 6.14089 6.18260 6.22643 6.33224 6.48790 6.49024 6.54959 6.67128 6.77982 7.03693 7.69409 7.83068 7.94832 8.42071 8.64692 9.53769 10.10635 10.45806 11.46534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.003509 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.960852 B = 7976.985559 C =10010.613759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.048 3.952 3 N -0.454 5.454 4 C 0.094 3.906 5 C -0.073 4.073 6 C 0.522 3.478 7 O -0.534 6.534 8 N -0.708 5.708 9 C 0.151 3.849 10 H 0.084 0.916 11 C 0.142 3.858 12 N -0.731 5.731 13 C -0.243 4.243 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.076 4.076 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.128 4.128 25 C -0.213 4.213 26 C -0.073 4.073 27 S 0.098 5.902 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.403 0.597 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -20.669 -3.406 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.231 4.231 3 N -0.168 5.168 4 C -0.037 4.037 5 C -0.115 4.115 6 C 0.307 3.693 7 O -0.411 6.411 8 N -0.359 5.359 9 C 0.046 3.954 10 H 0.103 0.897 11 C 0.014 3.986 12 N -0.376 5.376 13 C -0.374 4.374 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.577 5.577 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.077 4.077 22 C -0.198 4.198 23 C -0.199 4.199 24 C -0.185 4.185 25 C -0.333 4.333 26 C -0.133 4.133 27 S 0.353 5.647 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.237 0.763 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.766 -21.487 -2.713 21.834 hybrid contribution 0.501 1.975 -0.526 2.105 sum 3.267 -19.512 -3.240 20.047 Atomic orbital electron populations 1.20425 0.85312 1.04233 1.03668 1.26820 1.01524 0.90535 1.04184 1.66023 1.04443 1.31486 1.14844 1.19306 0.89707 0.92704 1.02026 1.20226 0.97765 0.97128 0.96396 1.20092 0.78642 0.80102 0.90430 1.90688 1.51535 1.53086 1.45828 1.45874 1.45934 1.34922 1.09168 1.21231 0.97390 0.94228 0.82547 0.89744 1.21087 0.92997 0.87321 0.97168 1.42365 1.20190 1.03719 1.71323 1.19198 1.02409 0.83224 1.32554 0.91236 1.24740 0.96652 0.97906 1.01426 1.69671 1.08798 1.34302 1.44965 0.86217 0.76773 0.85670 0.77664 1.21751 1.21802 1.20800 1.20894 0.95369 0.95865 0.95620 1.21901 0.96594 1.01931 0.99337 1.21886 1.01201 1.01655 0.95110 1.21873 1.00228 0.94345 1.02054 1.25509 1.00027 0.95494 1.12305 1.20240 0.88758 1.01197 1.03061 1.83693 0.97961 1.13056 1.70005 0.89742 0.90327 0.89102 0.87727 0.86818 0.76254 0.94887 0.95440 0.77994 0.93490 0.91924 0.93305 0.92894 0.92643 0.92975 0.91908 0.92917 0.94164 0.92145 0.90380 0.91293 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 36.01 0.38 -0.35 16 2 C 0.05 0.63 7.39 -13.46 -0.10 0.53 16 3 N -0.45 -7.39 10.53 -8.05 -0.08 -7.48 16 4 C 0.09 1.40 5.23 -84.22 -0.44 0.96 16 5 C -0.07 -1.00 5.88 -29.03 -0.17 -1.17 16 6 C 0.52 8.52 6.18 -10.99 -0.07 8.45 16 7 O -0.53 -10.32 13.16 5.56 0.07 -10.25 16 8 N -0.71 -11.17 3.64 -53.81 -0.20 -11.36 16 9 C 0.15 2.53 1.69 -67.93 -0.11 2.42 16 10 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 11 C 0.14 2.74 5.10 -4.04 -0.02 2.72 16 12 N -0.73 -18.12 5.43 -59.91 -0.33 -18.44 16 13 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 14 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 17 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.08 -1.04 0.62 -154.50 -0.10 -1.13 16 22 C -0.14 -1.70 7.97 37.15 0.30 -1.41 16 23 C -0.14 -1.82 8.12 37.16 0.30 -1.52 16 24 C -0.13 -1.77 7.00 37.16 0.26 -1.51 16 25 C -0.21 -2.68 6.59 -35.92 -0.24 -2.92 16 26 C -0.07 -0.69 10.10 36.01 0.36 -0.33 16 27 S 0.10 1.10 23.18 -107.50 -2.49 -1.39 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.07 6.71 -51.93 -0.35 0.72 16 32 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.40 6.01 8.60 -40.82 -0.35 5.66 16 34 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 35 H 0.03 0.52 6.17 -51.93 -0.32 0.19 16 36 H 0.39 10.33 7.33 -40.82 -0.30 10.03 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.62 7.60 -51.93 -0.39 0.22 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 44 H 0.05 0.75 5.78 -51.93 -0.30 0.45 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.96 7.53 -51.92 -0.39 0.57 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.63 6.76 -51.93 -0.35 0.28 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -33.85 398.89 -9.15 -43.00 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -7.94 Total: 12.51 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.11 Total: -2.48 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.12 Total: -64.71 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.85 -9.15 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486402975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.690 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds