Wall clock time and date at job start Tue Mar 31 2020 22:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91378 * 2 1 4 4 C 1.31788 * 117.12109 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74497 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46975 * 90.02946 * 5 4 3 7 7 O 1.21281 * 119.99993 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00192 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47286 * 324.99496 * 9 8 6 11 11 C 1.52999 * 109.47100 * 204.99245 * 9 8 6 12 12 N 1.46497 * 109.46867 * 55.00428 * 11 9 8 13 13 C 1.36944 * 120.00260 * 179.97438 * 12 11 9 14 14 H 1.08007 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00335 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99938 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47091 * 89.99621 * 17 15 13 19 19 H 1.48500 * 109.47046 * 209.99996 * 17 15 13 20 20 H 1.48499 * 109.46990 * 329.99819 * 17 15 13 21 21 C 1.53004 * 109.47127 * 84.99830 * 9 8 6 22 22 C 1.52993 * 109.47406 * 60.00109 * 21 9 8 23 23 C 1.53008 * 109.46966 * 180.02562 * 21 9 8 24 24 C 1.53003 * 109.46970 * 299.99823 * 21 9 8 25 25 C 1.33635 * 114.50125 * 0.23259 * 4 3 2 26 26 C 1.50704 * 126.03761 * 179.76901 * 25 4 3 27 27 S 1.70976 * 124.91910 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47262 * 90.00374 * 1 2 3 29 29 H 1.09001 * 109.46936 * 210.00127 * 1 2 3 30 30 H 1.08999 * 109.46821 * 329.99618 * 1 2 3 31 31 H 1.08994 * 109.46790 * 210.02346 * 5 4 3 32 32 H 1.08997 * 109.47305 * 330.02787 * 5 4 3 33 33 H 0.97000 * 119.99842 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47480 * 174.99555 * 11 9 8 35 35 H 1.09003 * 109.47689 * 295.00080 * 11 9 8 36 36 H 0.96996 * 120.00497 * 359.97438 * 12 11 9 37 37 H 0.96997 * 120.00231 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47515 * 59.99708 * 22 21 9 39 39 H 1.08996 * 109.47285 * 180.02562 * 22 21 9 40 40 H 1.08999 * 109.47038 * 300.00048 * 22 21 9 41 41 H 1.08996 * 109.46791 * 59.99807 * 23 21 9 42 42 H 1.08996 * 109.46849 * 179.97438 * 23 21 9 43 43 H 1.09002 * 109.46706 * 299.99527 * 23 21 9 44 44 H 1.08999 * 109.46967 * 60.00262 * 24 21 9 45 45 H 1.09000 * 109.47131 * 180.02562 * 24 21 9 46 46 H 1.09007 * 109.47052 * 300.00502 * 24 21 9 47 47 H 1.08999 * 109.47044 * 89.99566 * 26 25 4 48 48 H 1.08998 * 109.47284 * 210.00460 * 26 25 4 49 49 H 1.09004 * 109.46843 * 329.99947 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.8573 2.4069 1.4207 7 8 4.3447 1.8086 2.3428 8 7 5.7181 3.4144 1.6666 9 6 6.0352 3.7863 3.0476 10 1 5.1501 3.6585 3.6707 11 6 6.4831 5.2486 3.0918 12 7 5.4538 6.0933 2.4811 13 6 5.6353 7.4487 2.4072 14 1 6.5372 7.8949 2.7997 15 6 4.6602 8.2490 1.8280 16 7 3.5613 7.7052 1.3492 17 14 4.9075 10.0979 1.7279 18 1 5.5909 10.4377 0.4541 19 1 3.5880 10.7772 1.7784 20 1 5.7403 10.5485 2.8719 21 6 7.1609 2.8921 3.5710 22 6 8.4034 3.0717 2.6965 23 6 7.4916 3.2802 5.0136 24 6 6.7130 1.4298 3.5267 25 6 3.9354 -0.4006 -0.0039 26 6 5.3575 -0.8994 -0.0094 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 5.4431 1.7221 -0.5137 32 1 4.0905 2.8790 -0.5141 33 1 6.1277 3.8931 0.9291 34 1 6.6336 5.5514 4.1281 35 1 7.4176 5.3593 2.5416 36 1 4.6437 5.6927 2.1289 37 1 2.8801 8.2644 0.9442 38 1 8.7225 4.1134 2.7279 39 1 9.2052 2.4343 3.0691 40 1 8.1675 2.7949 1.6689 41 1 6.6063 3.1520 5.6363 42 1 8.2933 2.6429 5.3866 43 1 7.8106 4.3221 5.0455 44 1 6.4772 1.1530 2.4992 45 1 7.5149 0.7927 3.9000 46 1 5.8278 1.3019 4.1498 47 1 5.7034 -1.0222 1.0169 48 1 5.4043 -1.8580 -0.5260 49 1 5.9934 -0.1784 -0.5233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486402975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:59 Heat of formation + Delta-G solvation = -20.701766 kcal Electronic energy + Delta-G solvation = -28427.720597 eV Core-core repulsion = 24708.499081 eV Total energy + Delta-G solvation = -3719.221516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60390 -40.62022 -38.55646 -36.18711 -34.81226 -34.53518 -32.99123 -31.39812 -30.77906 -29.19390 -28.12073 -27.74373 -26.17001 -25.53429 -23.97591 -23.03271 -21.65317 -19.91528 -19.74591 -19.19611 -18.78742 -18.04522 -17.19951 -16.81517 -16.50443 -15.96252 -15.85604 -15.44730 -15.31161 -14.88510 -14.82506 -14.66705 -14.41910 -14.22839 -14.18678 -14.12353 -13.76956 -13.52227 -13.20062 -13.06647 -13.02358 -13.00745 -12.93723 -12.76035 -12.71123 -12.49507 -12.31647 -12.17337 -12.05236 -11.99905 -11.74272 -11.60050 -11.27465 -10.96484 -10.77929 -10.55078 -10.12555 -9.83699 -9.50135 -8.98632 -7.93170 -5.22954 -0.23919 0.41568 0.73512 1.47717 1.49322 1.57681 1.67851 1.75899 2.44210 2.56675 3.18527 3.40994 3.66935 3.77387 3.85009 4.00896 4.07439 4.09130 4.14662 4.27392 4.32585 4.36969 4.46618 4.47168 4.63684 4.64190 4.67086 4.71685 4.83851 4.87173 4.89906 4.93914 4.96495 4.97998 5.08416 5.08852 5.11246 5.18591 5.26794 5.29378 5.33461 5.47791 5.51451 5.59069 5.69375 6.26978 6.65863 6.86562 7.34081 7.36310 8.08663 8.31940 9.29781 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.003509 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.960852 B = 7976.985559 C =10010.613759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 N -0.504 5.504 4 C 0.062 3.938 5 C -0.066 4.066 6 C 0.521 3.479 7 O -0.568 6.568 8 N -0.704 5.704 9 C 0.161 3.839 10 H 0.046 0.954 11 C 0.145 3.855 12 N -0.743 5.743 13 C -0.243 4.243 14 H 0.079 0.921 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.269 1.269 21 C -0.069 4.069 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.217 4.217 26 C -0.074 4.074 27 S 0.148 5.852 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.033 0.967 35 H 0.047 0.953 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 -22.022 -3.816 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.252 4.252 3 N -0.220 5.220 4 C -0.069 4.069 5 C -0.108 4.108 6 C 0.308 3.692 7 O -0.447 6.447 8 N -0.354 5.354 9 C 0.056 3.944 10 H 0.064 0.936 11 C 0.018 3.982 12 N -0.386 5.386 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.801 3.199 18 H -0.211 1.211 19 H -0.228 1.228 20 H -0.194 1.194 21 C -0.071 4.071 22 C -0.193 4.193 23 C -0.198 4.198 24 C -0.175 4.175 25 C -0.338 4.338 26 C -0.133 4.133 27 S 0.403 5.597 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.109 0.891 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.087 -22.848 -3.111 23.613 hybrid contribution -0.203 2.293 -0.338 2.327 sum 4.884 -20.555 -3.449 21.407 Atomic orbital electron populations 1.20572 0.83413 1.04706 1.04971 1.27400 1.03047 0.91084 1.03631 1.66033 1.05588 1.33563 1.16767 1.19477 0.89620 0.93794 1.04045 1.20227 0.99273 0.96828 0.94504 1.20545 0.77826 0.79557 0.91274 1.90669 1.52624 1.54287 1.47109 1.45826 1.45947 1.34794 1.08873 1.21026 0.97086 0.93532 0.82774 0.93581 1.21227 0.92239 0.87989 0.96712 1.42557 1.20856 1.03608 1.71590 1.19630 1.02267 0.84530 1.31001 0.90287 1.25546 0.96646 1.02284 1.02078 1.69846 1.09817 1.35600 1.46696 0.85162 0.76244 0.80403 0.78064 1.21125 1.22753 1.19416 1.20845 0.94850 0.94976 0.96405 1.21862 0.95966 1.02176 0.99280 1.21890 1.01472 1.02026 0.94389 1.21756 0.99787 0.94660 1.01327 1.25991 1.02069 0.95245 1.10470 1.20379 0.86919 1.02657 1.03352 1.83401 0.96422 1.11105 1.68741 0.87952 0.87919 0.90510 0.84043 0.88045 0.75636 0.94914 0.93531 0.79594 0.94215 0.92338 0.91128 0.92356 0.93898 0.90550 0.92182 0.93334 0.91823 0.94899 0.90664 0.89090 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.46 71.24 0.75 -0.69 16 2 C 0.03 0.69 7.39 88.52 0.65 1.34 16 3 N -0.50 -16.94 10.53 -179.40 -1.89 -18.83 16 4 C 0.06 1.85 5.23 41.52 0.22 2.07 16 5 C -0.07 -1.84 5.88 29.10 0.17 -1.67 16 6 C 0.52 17.38 6.18 87.66 0.54 17.92 16 7 O -0.57 -22.74 13.16 -3.03 -0.04 -22.78 16 8 N -0.70 -22.40 3.64 -442.55 -1.61 -24.01 16 9 C 0.16 5.48 1.69 44.99 0.08 5.55 16 10 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 11 C 0.14 5.56 5.10 86.38 0.44 6.00 16 12 N -0.74 -37.35 5.43 -343.45 -1.87 -39.21 16 13 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 15 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 16 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 17 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C -0.07 -1.81 0.62 -52.18 -0.03 -1.84 16 22 C -0.14 -2.91 7.97 71.98 0.57 -2.33 16 23 C -0.14 -3.42 8.12 71.98 0.58 -2.84 16 24 C -0.12 -3.13 7.00 71.98 0.50 -2.63 16 25 C -0.22 -5.23 6.59 24.64 0.16 -5.07 16 26 C -0.07 -1.22 10.10 71.24 0.72 -0.50 16 27 S 0.15 3.14 23.18 -56.49 -1.31 1.83 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.14 2.68 6.71 -2.39 -0.02 2.67 16 32 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.41 12.10 8.60 -92.71 -0.80 11.30 16 34 H 0.03 1.29 6.71 -2.39 -0.02 1.27 16 35 H 0.05 1.66 6.17 -2.39 -0.01 1.65 16 36 H 0.37 20.60 7.33 -92.71 -0.68 19.92 16 37 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.06 1.31 6.32 -2.39 -0.02 1.30 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.19 7.60 -2.39 -0.02 1.18 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 44 H 0.05 1.32 5.78 -2.39 -0.01 1.31 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.03 1.04 7.53 -2.38 -0.02 1.02 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 1.25 6.76 -2.39 -0.02 1.23 16 Total: -1.00 -75.37 398.89 1.75 -73.62 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.51 Total: 42.06 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 6.66 Total: -0.95 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -5.08 Total: -141.96 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -75.37 1.75 -73.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486402975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.915 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds