Wall clock time and date at job start Tue Mar 31 2020 22:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29033 * 124.91826 * 2 1 4 4 C 1.31780 * 117.12499 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.74533 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46625 * 90.03076 * 5 4 3 7 7 O 1.21276 * 120.00791 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99614 * 179.97438 * 6 5 4 9 9 C 1.46510 * 119.99902 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46956 * 34.99871 * 9 8 6 11 11 C 1.52997 * 109.47071 * 154.99777 * 9 8 6 12 12 N 1.46505 * 109.47253 * 305.00306 * 11 9 8 13 13 C 1.36932 * 119.99986 * 180.02562 * 12 11 9 14 14 H 1.08009 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00337 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00525 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99549 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47295 * 90.00095 * 17 15 13 19 19 H 1.48504 * 109.47114 * 209.99490 * 17 15 13 20 20 H 1.48501 * 109.47553 * 329.99826 * 17 15 13 21 21 C 1.52992 * 109.46966 * 275.00091 * 9 8 6 22 22 C 1.52997 * 109.47482 * 59.99937 * 21 9 8 23 23 C 1.53006 * 109.47223 * 299.99649 * 21 9 8 24 24 C 1.52999 * 109.46961 * 180.02562 * 21 9 8 25 25 C 1.33636 * 114.50071 * 0.23214 * 4 3 2 26 26 C 1.50704 * 126.03608 * 179.76369 * 25 4 3 27 27 S 1.70979 * 124.91689 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46762 * 90.00286 * 1 2 3 29 29 H 1.09007 * 109.46882 * 210.00555 * 1 2 3 30 30 H 1.08998 * 109.47097 * 329.99769 * 1 2 3 31 31 H 1.08989 * 109.47671 * 330.02619 * 5 4 3 32 32 H 1.09002 * 109.47091 * 210.02352 * 5 4 3 33 33 H 0.96993 * 120.00496 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47101 * 64.99752 * 11 9 8 35 35 H 1.09002 * 109.47196 * 185.00017 * 11 9 8 36 36 H 0.96995 * 119.99905 * 359.97438 * 12 11 9 37 37 H 0.97000 * 120.00291 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47153 * 59.99783 * 22 21 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 22 21 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 22 21 9 41 41 H 1.08993 * 109.46955 * 180.02562 * 23 21 9 42 42 H 1.09000 * 109.47050 * 300.00346 * 23 21 9 43 43 H 1.09001 * 109.47002 * 60.00080 * 23 21 9 44 44 H 1.09002 * 109.46716 * 299.99630 * 24 21 9 45 45 H 1.09000 * 109.47486 * 59.99547 * 24 21 9 46 46 H 1.09001 * 109.47362 * 180.02562 * 24 21 9 47 47 H 1.09004 * 109.46462 * 90.00497 * 26 25 4 48 48 H 1.09003 * 109.46891 * 209.99748 * 26 25 4 49 49 H 1.08996 * 109.47291 * 330.00485 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.8573 2.4067 1.4207 7 8 4.3448 1.8085 2.3428 8 7 5.7190 3.4135 1.6666 9 6 6.0361 3.7855 3.0478 10 1 6.0462 2.8916 3.6715 11 6 7.4113 4.4544 3.0928 12 7 8.4058 3.5679 2.4835 13 6 9.7167 3.9570 2.4107 14 1 10.0174 4.9178 2.8021 15 6 10.6592 3.1168 1.8339 16 7 11.9190 3.4911 1.7634 17 14 10.1390 1.4556 1.1564 18 1 9.7587 1.6005 -0.2718 19 1 11.2680 0.4979 1.2732 20 1 8.9770 0.9476 1.9290 21 6 4.9777 4.7594 3.5694 22 6 3.6025 4.0905 3.5243 23 6 4.9635 6.0141 2.6938 24 6 5.3092 5.1483 5.0115 25 6 3.9354 -0.4006 -0.0039 26 6 5.3575 -0.8994 -0.0095 27 16 2.4857 -1.4020 0.0006 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8899 0.5139 31 1 4.0906 2.8789 -0.5141 32 1 5.4432 1.7220 -0.5137 33 1 6.1292 3.8918 0.9292 34 1 7.3764 5.3943 2.5418 35 1 7.6860 4.6508 4.1292 36 1 8.1359 2.7049 2.1324 37 1 12.5775 2.9041 1.3600 38 1 3.6126 3.1966 4.1481 39 1 3.3666 3.8137 2.4967 40 1 2.8486 4.7842 3.8964 41 1 4.2099 6.7081 3.0657 42 1 5.9433 6.4907 2.7259 43 1 4.7277 5.7374 1.6662 44 1 5.3196 4.2547 5.6355 45 1 6.2889 5.6251 5.0433 46 1 4.5550 5.8419 5.3833 47 1 5.7034 -1.0223 1.0168 48 1 5.4042 -1.8582 -0.5260 49 1 5.9934 -0.1785 -0.5233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486402976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:02 Heat of formation + Delta-G solvation = 4.795678 kcal Electronic energy + Delta-G solvation = -28593.313901 eV Core-core repulsion = 24875.198037 eV Total energy + Delta-G solvation = -3718.115864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56974 -39.61205 -37.39726 -34.60164 -33.95319 -33.27429 -31.37335 -30.60399 -29.90578 -28.01895 -27.14752 -26.67814 -25.23073 -23.73359 -22.96326 -21.38591 -20.55875 -18.94884 -18.66354 -18.10061 -17.65612 -16.88509 -15.89909 -15.71259 -15.11936 -14.94057 -14.64166 -14.20476 -14.00798 -13.75599 -13.64620 -13.61351 -13.44745 -13.29385 -13.06457 -12.94702 -12.74502 -12.43498 -12.35420 -12.24040 -12.06578 -11.86673 -11.79382 -11.54533 -11.39882 -11.22398 -11.16708 -10.90329 -10.73545 -10.53086 -10.33223 -10.01126 -9.72033 -9.66326 -9.64765 -9.27787 -8.94911 -8.67824 -8.65068 -7.28327 -5.81708 -3.17457 0.61284 1.21393 1.60442 2.60994 2.84616 3.30325 3.35494 3.40094 3.49938 3.94537 4.53976 4.65252 4.82359 4.86047 4.90859 4.93320 5.05164 5.09747 5.14853 5.17927 5.21006 5.37130 5.44192 5.47627 5.48795 5.58902 5.63135 5.73573 5.76311 5.80700 5.82489 5.87729 5.88794 6.02537 6.09810 6.10967 6.14778 6.28079 6.38482 6.40493 6.46016 6.59223 6.68513 6.88141 7.67058 7.76018 7.94166 8.36946 8.46206 9.16057 9.88196 10.08092 11.36650 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.004091 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.288005 B = 6843.025151 C = 9080.323912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.042 3.958 3 N -0.457 5.457 4 C 0.086 3.914 5 C -0.072 4.072 6 C 0.519 3.481 7 O -0.531 6.531 8 N -0.714 5.714 9 C 0.147 3.853 10 H 0.085 0.915 11 C 0.146 3.854 12 N -0.754 5.754 13 C -0.244 4.244 14 H 0.091 0.909 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.880 3.120 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.204 4.204 26 C -0.080 4.080 27 S 0.108 5.892 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.403 0.597 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.361 -5.090 -4.222 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.237 4.237 3 N -0.172 5.172 4 C -0.046 4.046 5 C -0.115 4.115 6 C 0.304 3.696 7 O -0.407 6.407 8 N -0.365 5.365 9 C 0.042 3.958 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.400 5.400 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.581 5.581 17 Si 0.710 3.290 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.077 4.077 22 C -0.185 4.185 23 C -0.199 4.199 24 C -0.199 4.199 25 C -0.325 4.325 26 C -0.139 4.139 27 S 0.363 5.637 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.238 0.762 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.006 -5.952 -3.523 24.023 hybrid contribution 0.617 -0.289 -0.837 1.079 sum -22.389 -6.241 -4.359 23.648 Atomic orbital electron populations 1.20398 0.85316 1.04116 1.03602 1.26771 1.01448 0.90826 1.04640 1.65983 1.04309 1.31654 1.15216 1.19245 0.89644 0.92737 1.02926 1.20222 0.98131 0.96898 0.96222 1.20168 0.78943 0.79936 0.90572 1.90698 1.51403 1.52845 1.45783 1.45974 1.45719 1.35482 1.09345 1.21313 0.94129 0.97967 0.82380 0.89651 1.21086 0.85814 0.93536 0.97703 1.42703 1.05624 1.18799 1.72921 1.19049 0.82430 1.02904 1.33016 0.89151 1.24654 0.95235 0.98006 1.01068 1.69692 1.00822 1.37395 1.50154 0.86606 0.77659 0.85596 0.79130 1.20994 1.21692 1.20312 1.20884 0.95640 0.95447 0.95732 1.21862 0.94777 0.99639 1.02210 1.21913 1.01956 0.96660 0.99339 1.21895 1.01760 1.01293 0.94962 1.25591 1.00240 0.95577 1.11076 1.20318 0.88550 1.01539 1.03539 1.83782 0.97694 1.12685 1.69551 0.89796 0.90284 0.89357 0.87290 0.87302 0.76191 0.94451 0.93931 0.80533 0.93026 0.92269 0.92779 0.94062 0.93159 0.91809 0.92863 0.92658 0.91778 0.92840 0.90043 0.90996 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.46 36.01 0.38 -0.19 16 2 C 0.04 0.49 7.39 -13.45 -0.10 0.39 16 3 N -0.46 -6.47 10.53 -8.06 -0.08 -6.55 16 4 C 0.09 1.20 5.23 -84.23 -0.44 0.76 16 5 C -0.07 -0.91 5.88 -29.04 -0.17 -1.08 16 6 C 0.52 7.87 6.18 -10.98 -0.07 7.80 16 7 O -0.53 -9.65 13.16 5.56 0.07 -9.58 16 8 N -0.71 -10.42 3.64 -53.80 -0.20 -10.62 16 9 C 0.15 2.31 1.69 -67.93 -0.11 2.20 16 10 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 11 C 0.15 2.65 5.10 -4.04 -0.02 2.63 16 12 N -0.75 -17.11 5.24 -59.90 -0.31 -17.42 16 13 C -0.24 -6.69 10.47 -15.06 -0.16 -6.85 16 14 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 17 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C -0.08 -1.02 0.62 -154.51 -0.10 -1.11 16 22 C -0.13 -1.81 7.00 37.16 0.26 -1.55 16 23 C -0.14 -1.72 7.97 37.16 0.30 -1.43 16 24 C -0.14 -1.78 8.12 37.16 0.30 -1.48 16 25 C -0.20 -2.64 6.59 -35.92 -0.24 -2.88 16 26 C -0.08 -0.92 10.10 36.01 0.36 -0.56 16 27 S 0.11 1.18 23.18 -107.50 -2.49 -1.32 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 1.20 8.14 -51.94 -0.42 0.77 16 32 H 0.11 1.20 6.71 -51.93 -0.35 0.85 16 33 H 0.40 5.41 8.60 -40.82 -0.35 5.06 16 34 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 35 H 0.04 0.80 6.71 -51.93 -0.35 0.45 16 36 H 0.36 8.17 5.20 -40.82 -0.21 7.96 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 39 H 0.05 0.83 5.78 -51.93 -0.30 0.53 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 43 H 0.05 0.64 7.60 -51.93 -0.39 0.24 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.88 6.76 -51.93 -0.35 0.53 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -33.68 395.78 -8.79 -42.47 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.90 Total: 11.51 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 0.10 Total: -3.27 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.18 Total: -62.61 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.68 -8.79 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486402976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.264 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds