Wall clock time and date at job start Tue Mar 31 2020 22:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29033 * 124.91826 * 2 1 4 4 C 1.31780 * 117.12499 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.74533 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46625 * 90.03076 * 5 4 3 7 7 O 1.21276 * 120.00791 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99614 * 179.97438 * 6 5 4 9 9 C 1.46510 * 119.99902 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46956 * 34.99871 * 9 8 6 11 11 C 1.52997 * 109.47071 * 154.99777 * 9 8 6 12 12 N 1.46505 * 109.47253 * 305.00306 * 11 9 8 13 13 C 1.36932 * 119.99986 * 180.02562 * 12 11 9 14 14 H 1.08009 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00337 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00525 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99549 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47295 * 90.00095 * 17 15 13 19 19 H 1.48504 * 109.47114 * 209.99490 * 17 15 13 20 20 H 1.48501 * 109.47553 * 329.99826 * 17 15 13 21 21 C 1.52992 * 109.46966 * 275.00091 * 9 8 6 22 22 C 1.52997 * 109.47482 * 59.99937 * 21 9 8 23 23 C 1.53006 * 109.47223 * 299.99649 * 21 9 8 24 24 C 1.52999 * 109.46961 * 180.02562 * 21 9 8 25 25 C 1.33636 * 114.50071 * 0.23214 * 4 3 2 26 26 C 1.50704 * 126.03608 * 179.76369 * 25 4 3 27 27 S 1.70979 * 124.91689 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46762 * 90.00286 * 1 2 3 29 29 H 1.09007 * 109.46882 * 210.00555 * 1 2 3 30 30 H 1.08998 * 109.47097 * 329.99769 * 1 2 3 31 31 H 1.08989 * 109.47671 * 330.02619 * 5 4 3 32 32 H 1.09002 * 109.47091 * 210.02352 * 5 4 3 33 33 H 0.96993 * 120.00496 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47101 * 64.99752 * 11 9 8 35 35 H 1.09002 * 109.47196 * 185.00017 * 11 9 8 36 36 H 0.96995 * 119.99905 * 359.97438 * 12 11 9 37 37 H 0.97000 * 120.00291 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47153 * 59.99783 * 22 21 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 22 21 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 22 21 9 41 41 H 1.08993 * 109.46955 * 180.02562 * 23 21 9 42 42 H 1.09000 * 109.47050 * 300.00346 * 23 21 9 43 43 H 1.09001 * 109.47002 * 60.00080 * 23 21 9 44 44 H 1.09002 * 109.46716 * 299.99630 * 24 21 9 45 45 H 1.09000 * 109.47486 * 59.99547 * 24 21 9 46 46 H 1.09001 * 109.47362 * 180.02562 * 24 21 9 47 47 H 1.09004 * 109.46462 * 90.00497 * 26 25 4 48 48 H 1.09003 * 109.46891 * 209.99748 * 26 25 4 49 49 H 1.08996 * 109.47291 * 330.00485 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.8573 2.4067 1.4207 7 8 4.3448 1.8085 2.3428 8 7 5.7190 3.4135 1.6666 9 6 6.0361 3.7855 3.0478 10 1 6.0462 2.8916 3.6715 11 6 7.4113 4.4544 3.0928 12 7 8.4058 3.5679 2.4835 13 6 9.7167 3.9570 2.4107 14 1 10.0174 4.9178 2.8021 15 6 10.6592 3.1168 1.8339 16 7 11.9190 3.4911 1.7634 17 14 10.1390 1.4556 1.1564 18 1 9.7587 1.6005 -0.2718 19 1 11.2680 0.4979 1.2732 20 1 8.9770 0.9476 1.9290 21 6 4.9777 4.7594 3.5694 22 6 3.6025 4.0905 3.5243 23 6 4.9635 6.0141 2.6938 24 6 5.3092 5.1483 5.0115 25 6 3.9354 -0.4006 -0.0039 26 6 5.3575 -0.8994 -0.0095 27 16 2.4857 -1.4020 0.0006 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8899 0.5139 31 1 4.0906 2.8789 -0.5141 32 1 5.4432 1.7220 -0.5137 33 1 6.1292 3.8918 0.9292 34 1 7.3764 5.3943 2.5418 35 1 7.6860 4.6508 4.1292 36 1 8.1359 2.7049 2.1324 37 1 12.5775 2.9041 1.3600 38 1 3.6126 3.1966 4.1481 39 1 3.3666 3.8137 2.4967 40 1 2.8486 4.7842 3.8964 41 1 4.2099 6.7081 3.0657 42 1 5.9433 6.4907 2.7259 43 1 4.7277 5.7374 1.6662 44 1 5.3196 4.2547 5.6355 45 1 6.2889 5.6251 5.0433 46 1 4.5550 5.8419 5.3833 47 1 5.7034 -1.0223 1.0168 48 1 5.4042 -1.8582 -0.5260 49 1 5.9934 -0.1785 -0.5233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486402976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:01 Heat of formation + Delta-G solvation = -17.368822 kcal Electronic energy + Delta-G solvation = -28594.275026 eV Core-core repulsion = 24875.198037 eV Total energy + Delta-G solvation = -3719.076989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66018 -40.66887 -38.63034 -36.33812 -34.86017 -34.58899 -33.33114 -31.48974 -30.85037 -29.49915 -28.16115 -27.81644 -26.20293 -25.36120 -23.96972 -23.01027 -21.71074 -20.11313 -19.90242 -19.44463 -18.86883 -18.10314 -17.16831 -17.03301 -16.36671 -16.08036 -15.91510 -15.70854 -15.22060 -14.84510 -14.77290 -14.72530 -14.51967 -14.42416 -14.25264 -14.23259 -13.85164 -13.64018 -13.38376 -13.22015 -13.09162 -13.05585 -12.99829 -12.80219 -12.76389 -12.52988 -12.34509 -12.16995 -12.10887 -12.01155 -11.82561 -11.64214 -11.32043 -11.00672 -10.84063 -10.61850 -10.16370 -9.91861 -9.55221 -9.28969 -8.02093 -5.35397 -0.27745 0.36485 0.71799 1.35255 1.39657 1.46437 1.63578 1.68447 2.36992 2.47708 3.12269 3.29634 3.46956 3.72012 3.79053 3.95902 4.00716 4.02290 4.04253 4.11885 4.27401 4.30929 4.42912 4.43976 4.55448 4.60763 4.62377 4.66366 4.79770 4.82527 4.85491 4.89238 4.92541 4.94944 5.04486 5.05912 5.07736 5.13326 5.22957 5.25399 5.29874 5.43211 5.53014 5.62760 5.77473 6.21143 6.59396 6.77673 7.07594 7.29554 7.82796 8.02004 9.19325 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.004091 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.288005 B = 6843.025151 C = 9080.323912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.490 5.490 4 C 0.067 3.933 5 C -0.069 4.069 6 C 0.520 3.480 7 O -0.563 6.563 8 N -0.710 5.710 9 C 0.158 3.842 10 H 0.060 0.940 11 C 0.147 3.853 12 N -0.755 5.755 13 C -0.230 4.230 14 H 0.061 0.939 15 C -0.060 4.060 16 N -0.982 5.982 17 Si 0.948 3.052 18 H -0.265 1.265 19 H -0.300 1.300 20 H -0.264 1.264 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.227 4.227 26 C -0.081 4.081 27 S 0.140 5.860 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.411 0.589 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.698 -5.666 -5.181 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.244 4.244 3 N -0.205 5.205 4 C -0.064 4.064 5 C -0.111 4.111 6 C 0.306 3.694 7 O -0.442 6.442 8 N -0.362 5.362 9 C 0.053 3.947 10 H 0.079 0.921 11 C 0.021 3.979 12 N -0.401 5.401 13 C -0.361 4.361 14 H 0.079 0.921 15 C -0.251 4.251 16 N -0.633 5.633 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.227 1.227 20 H -0.189 1.189 21 C -0.071 4.071 22 C -0.173 4.173 23 C -0.195 4.195 24 C -0.198 4.198 25 C -0.348 4.348 26 C -0.140 4.140 27 S 0.396 5.604 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.247 0.753 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.392 -6.511 -4.486 26.595 hybrid contribution 1.271 -0.063 -0.459 1.353 sum -24.121 -6.573 -4.945 25.485 Atomic orbital electron populations 1.20585 0.82817 1.04969 1.05112 1.27484 1.03075 0.90771 1.03064 1.66027 1.04651 1.32920 1.16870 1.19459 0.89997 0.93379 1.03575 1.20256 0.98917 0.97461 0.94484 1.20582 0.78196 0.79235 0.91354 1.90684 1.52585 1.53893 1.47046 1.45929 1.45676 1.35567 1.09018 1.21081 0.93449 0.97263 0.82928 0.92146 1.21206 0.86034 0.93432 0.97198 1.42679 1.04726 1.19516 1.73158 1.19023 0.84369 1.01513 1.31154 0.92086 1.25422 0.95178 1.02159 1.02373 1.69869 1.02240 1.39052 1.52122 0.85517 0.77182 0.80395 0.79383 1.19049 1.22666 1.18934 1.20841 0.94365 0.95402 0.96542 1.21720 0.95501 0.99084 1.00987 1.21876 1.02361 0.96002 0.99225 1.21892 1.02265 1.01401 0.94253 1.25876 1.01546 0.96016 1.11330 1.20352 0.87992 1.02709 1.02913 1.83585 0.96386 1.11658 1.68776 0.87839 0.88286 0.89596 0.85718 0.85629 0.75321 0.93204 0.94203 0.80264 0.93373 0.94440 0.93991 0.92383 0.91525 0.92089 0.92570 0.93391 0.92046 0.90901 0.91495 0.89101 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.46 71.24 0.75 -0.24 16 2 C 0.03 0.74 7.39 88.52 0.65 1.40 16 3 N -0.49 -13.33 10.53 -179.40 -1.89 -15.22 16 4 C 0.07 1.80 5.23 41.52 0.22 2.02 16 5 C -0.07 -1.65 5.88 29.10 0.17 -1.48 16 6 C 0.52 15.28 6.18 87.66 0.54 15.83 16 7 O -0.56 -20.40 13.16 -3.02 -0.04 -20.44 16 8 N -0.71 -19.87 3.64 -442.53 -1.61 -21.49 16 9 C 0.16 4.85 1.69 44.99 0.08 4.93 16 10 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 11 C 0.15 5.24 5.10 86.38 0.44 5.68 16 12 N -0.75 -33.70 5.24 -343.44 -1.80 -35.50 16 13 C -0.23 -12.65 10.47 84.03 0.88 -11.77 16 14 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 15 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 16 N -0.98 -61.81 13.97 21.65 0.30 -61.51 16 17 Si 0.95 44.39 27.74 68.60 1.90 46.29 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 21 C -0.07 -1.78 0.62 -52.18 -0.03 -1.82 16 22 C -0.12 -3.15 7.00 71.98 0.50 -2.64 16 23 C -0.14 -3.03 7.97 71.98 0.57 -2.46 16 24 C -0.14 -3.33 8.12 71.98 0.58 -2.75 16 25 C -0.23 -5.59 6.59 24.64 0.16 -5.42 16 26 C -0.08 -1.74 10.10 71.24 0.72 -1.02 16 27 S 0.14 2.83 23.18 -56.49 -1.31 1.52 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.13 2.52 6.71 -2.39 -0.02 2.50 16 33 H 0.41 10.31 8.60 -92.71 -0.80 9.51 16 34 H 0.05 1.70 6.17 -2.39 -0.01 1.68 16 35 H 0.04 1.47 6.71 -2.39 -0.02 1.46 16 36 H 0.36 15.95 5.20 -92.71 -0.48 15.47 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.04 1.17 7.53 -2.39 -0.02 1.15 16 39 H 0.04 1.24 5.78 -2.39 -0.01 1.23 16 40 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.39 6.32 -2.39 -0.02 1.37 16 43 H 0.06 1.21 7.60 -2.39 -0.02 1.19 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.71 6.76 -2.39 -0.02 1.70 16 Total: -1.00 -73.45 395.78 1.89 -71.56 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.37 Total: 37.50 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 6.70 Total: -2.72 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -5.00 Total: -133.71 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.04 Total: -20.44 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.31 Total: 1.52 kcal Total: -73.45 1.89 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486402976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.187 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds