Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29025 * 124.92170 * 2 1 4 4 C 1.31782 * 117.13017 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.74611 * 179.97438 * 4 3 2 6 6 C 1.33633 * 114.49789 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.03361 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47201 * 89.99772 * 7 6 4 9 9 O 1.21285 * 120.00375 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00018 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47136 * 325.00038 * 11 10 8 13 13 C 1.53006 * 109.46726 * 205.00037 * 11 10 8 14 14 N 1.46504 * 109.46883 * 55.00397 * 13 11 10 15 15 C 1.36936 * 119.99477 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00404 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47259 * 89.99741 * 19 17 15 21 21 H 1.48498 * 109.47318 * 209.99684 * 19 17 15 22 22 H 1.48498 * 109.47493 * 329.99764 * 19 17 15 23 23 C 1.52996 * 109.47308 * 85.00189 * 11 10 8 24 24 C 1.52992 * 109.47473 * 179.97438 * 23 11 10 25 25 C 1.52996 * 109.46951 * 299.99975 * 23 11 10 26 26 C 1.53000 * 109.46955 * 59.99558 * 23 11 10 27 27 S 1.70989 * 124.91785 * 180.31267 * 2 1 3 28 28 H 1.08999 * 109.47199 * 89.97739 * 1 2 3 29 29 H 1.09000 * 109.47088 * 209.97429 * 1 2 3 30 30 H 1.08996 * 109.47176 * 329.97319 * 1 2 3 31 31 H 1.09002 * 109.47251 * 269.99806 * 5 4 3 32 32 H 1.08994 * 109.47562 * 30.00281 * 5 4 3 33 33 H 1.09003 * 109.47163 * 150.00725 * 5 4 3 34 34 H 1.08995 * 109.47529 * 329.99523 * 7 6 4 35 35 H 1.09002 * 109.47087 * 209.99633 * 7 6 4 36 36 H 0.96995 * 119.99419 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47002 * 174.99895 * 13 11 10 38 38 H 1.08993 * 109.46955 * 295.00332 * 13 11 10 39 39 H 0.96992 * 119.99966 * 359.97438 * 14 13 11 40 40 H 0.96993 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.47004 * 60.00224 * 24 23 11 42 42 H 1.08998 * 109.47374 * 179.97438 * 24 23 11 43 43 H 1.09002 * 109.47721 * 300.00336 * 24 23 11 44 44 H 1.08996 * 109.47312 * 60.00123 * 25 23 11 45 45 H 1.09007 * 109.46984 * 179.97438 * 25 23 11 46 46 H 1.08993 * 109.47243 * 299.99585 * 25 23 11 47 47 H 1.09002 * 109.47044 * 60.00129 * 26 23 11 48 48 H 1.09004 * 109.47376 * 179.97438 * 26 23 11 49 49 H 1.08996 * 109.47552 * 300.00026 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5306 2.0245 0.0000 6 6 3.9353 -0.4007 0.0004 7 6 5.3574 -0.8994 0.0015 8 6 5.8302 -1.0661 1.4227 9 8 5.0860 -0.8051 2.3440 10 7 7.0803 -1.5052 1.6699 11 6 7.5401 -1.6667 3.0515 12 1 7.1005 -0.8874 3.6741 13 6 9.0655 -1.5563 3.0974 14 7 9.4822 -0.2913 2.4871 15 6 10.8117 0.0283 2.4139 16 1 11.5531 -0.6520 2.8064 17 6 11.2066 1.2267 1.8352 18 7 10.3031 2.0555 1.3564 19 14 13.0202 1.6630 1.7360 20 1 13.5841 1.1486 0.4621 21 1 13.1778 3.1387 1.7869 22 1 13.7406 1.0485 2.8799 23 6 7.1121 -3.0393 3.5743 24 6 7.5928 -3.2082 5.0169 25 6 5.5868 -3.1496 3.5283 26 6 7.7291 -4.1330 2.7003 27 16 2.4857 -1.4020 -0.0077 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 4.7671 2.3000 -1.0278 32 1 4.0904 2.8795 0.5131 33 1 5.4431 1.7225 0.5142 34 1 5.9953 -0.1798 -0.5116 35 1 5.4061 -1.8594 -0.5125 36 1 7.6754 -1.7143 0.9331 37 1 9.4009 -1.5874 4.1341 38 1 9.5066 -2.3876 2.5476 39 1 8.8164 0.3194 2.1344 40 1 10.5791 2.8927 0.9517 41 1 7.1535 -2.4290 5.6399 42 1 7.2875 -4.1860 5.3896 43 1 8.6795 -3.1297 5.0494 44 1 5.2447 -3.0296 2.5004 45 1 5.2819 -4.1278 3.9004 46 1 5.1472 -2.3705 4.1509 47 1 8.8158 -4.0544 2.7330 48 1 7.4246 -5.1111 3.0730 49 1 7.3870 -4.0130 1.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486406251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = 0.682888 kcal Electronic energy + Delta-G solvation = -28340.494352 eV Core-core repulsion = 24622.200144 eV Total energy + Delta-G solvation = -3718.294208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30480 -39.63793 -37.42720 -34.44754 -33.77579 -33.18334 -31.20325 -30.59826 -29.11350 -27.77338 -27.13700 -26.80790 -25.33922 -23.68121 -22.72261 -21.53855 -20.53716 -18.84969 -18.47618 -17.91450 -17.29236 -16.71710 -15.84912 -15.59714 -15.07524 -14.82362 -14.70519 -14.11042 -13.93077 -13.67839 -13.53844 -13.50906 -13.27193 -13.16148 -13.08451 -12.74888 -12.49081 -12.38242 -12.15249 -11.99016 -11.93634 -11.83604 -11.77229 -11.37787 -11.22258 -11.12244 -11.01839 -10.83596 -10.73677 -10.51106 -10.24166 -9.95039 -9.76542 -9.64225 -9.59580 -9.16464 -8.91892 -8.56479 -8.48930 -6.97125 -5.80884 -3.10090 0.70921 1.34722 1.75059 2.80297 2.92997 3.39989 3.45945 3.47484 3.56359 4.06087 4.53970 4.69987 4.90316 4.93777 4.98813 5.03939 5.10575 5.21146 5.23685 5.25033 5.48236 5.51498 5.56421 5.57723 5.65085 5.71590 5.75837 5.78505 5.89426 5.91829 5.94097 6.03355 6.03915 6.07947 6.11907 6.16298 6.30564 6.40993 6.45874 6.46027 6.50788 6.63984 6.73679 6.97710 7.65518 7.79480 7.86897 8.37287 8.55813 9.49244 10.05284 10.40810 11.41423 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003507 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.596760 B = 7981.086074 C =10000.114164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.040 3.960 3 N -0.469 5.469 4 C 0.080 3.920 5 C -0.081 4.081 6 C -0.196 4.196 7 C -0.067 4.067 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.707 5.707 11 C 0.151 3.849 12 H 0.086 0.914 13 C 0.142 3.858 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.141 4.141 27 S 0.116 5.884 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.403 0.597 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 -10.943 -3.378 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.237 4.237 3 N -0.185 5.185 4 C -0.052 4.052 5 C -0.140 4.140 6 C -0.317 4.317 7 C -0.109 4.109 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.358 5.358 11 C 0.046 3.954 12 H 0.104 0.896 13 C 0.014 3.986 14 N -0.376 5.376 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.078 4.078 24 C -0.198 4.198 25 C -0.185 4.185 26 C -0.198 4.198 27 S 0.372 5.628 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.238 0.762 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.922 -11.315 -2.694 20.534 hybrid contribution 1.733 1.107 -0.526 2.122 sum -15.189 -10.208 -3.220 18.582 Atomic orbital electron populations 1.20398 0.85432 1.04071 1.03573 1.26830 1.01470 0.91136 1.04311 1.66114 1.04579 1.31630 1.16152 1.20126 0.90019 0.94113 1.00895 1.20396 0.96234 0.94609 1.02778 1.24904 0.98269 0.95528 1.13046 1.20079 0.90722 1.03801 0.96332 1.20202 0.82135 0.77070 0.90555 1.90709 1.54665 1.49668 1.45746 1.45898 1.13738 1.66905 1.09265 1.21250 0.95622 0.96122 0.82419 0.89644 1.21094 0.89779 0.90493 0.97237 1.42346 1.05469 1.18401 1.71340 1.19198 0.83823 1.01768 1.32473 0.91236 1.24728 0.97456 0.97126 1.01430 1.69656 1.31746 1.11364 1.45090 0.86211 0.84995 0.77402 0.77676 1.21752 1.21791 1.20815 1.20895 0.96031 0.95190 0.95664 1.21884 1.01670 1.01232 0.95062 1.21865 0.94206 1.00410 1.02016 1.21906 1.01167 0.97402 0.99319 1.83707 0.97764 1.12446 1.68875 0.89836 0.90285 0.89407 0.90656 0.90611 0.90158 0.86430 0.88073 0.76209 0.94811 0.95404 0.78066 0.93506 0.92615 0.92945 0.91900 0.93040 0.94095 0.92071 0.91912 0.93266 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.46 36.00 0.38 -0.24 16 2 C 0.04 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -7.07 10.53 -8.06 -0.08 -7.15 16 4 C 0.08 1.20 6.74 -84.23 -0.57 0.63 16 5 C -0.08 -1.14 9.82 36.01 0.35 -0.79 16 6 C -0.20 -2.72 5.08 -35.92 -0.18 -2.90 16 7 C -0.07 -0.83 5.63 -29.04 -0.16 -1.00 16 8 C 0.52 7.86 6.18 -10.98 -0.07 7.80 16 9 O -0.53 -9.71 13.16 5.55 0.07 -9.64 16 10 N -0.71 -10.56 3.64 -53.80 -0.20 -10.76 16 11 C 0.15 2.43 1.69 -67.93 -0.11 2.32 16 12 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 13 C 0.14 2.65 5.10 -4.04 -0.02 2.63 16 14 N -0.73 -17.44 5.43 -59.90 -0.33 -17.76 16 15 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 19 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.08 -1.03 0.62 -154.52 -0.10 -1.12 16 24 C -0.14 -1.78 8.12 37.15 0.30 -1.48 16 25 C -0.13 -1.77 7.00 37.16 0.26 -1.51 16 26 C -0.14 -1.69 7.97 37.16 0.30 -1.40 16 27 S 0.12 1.38 23.18 -107.50 -2.49 -1.11 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.21 7.35 -51.93 -0.38 0.83 16 34 H 0.12 1.39 7.43 -51.93 -0.39 1.00 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.40 5.68 8.60 -40.82 -0.35 5.33 16 37 H 0.03 0.65 6.71 -51.93 -0.35 0.30 16 38 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 39 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 44 H 0.05 0.75 5.77 -51.93 -0.30 0.45 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 47 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.61 7.60 -51.93 -0.39 0.22 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -32.23 399.67 -9.28 -41.51 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -8.01 Total: 12.16 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.12 Total: -62.12 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.23 -9.28 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486406251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.193 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds