Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29025 * 124.92170 * 2 1 4 4 C 1.31782 * 117.13017 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.74611 * 179.97438 * 4 3 2 6 6 C 1.33633 * 114.49789 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.03361 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47201 * 89.99772 * 7 6 4 9 9 O 1.21285 * 120.00375 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00018 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47136 * 325.00038 * 11 10 8 13 13 C 1.53006 * 109.46726 * 205.00037 * 11 10 8 14 14 N 1.46504 * 109.46883 * 55.00397 * 13 11 10 15 15 C 1.36936 * 119.99477 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00404 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47259 * 89.99741 * 19 17 15 21 21 H 1.48498 * 109.47318 * 209.99684 * 19 17 15 22 22 H 1.48498 * 109.47493 * 329.99764 * 19 17 15 23 23 C 1.52996 * 109.47308 * 85.00189 * 11 10 8 24 24 C 1.52992 * 109.47473 * 179.97438 * 23 11 10 25 25 C 1.52996 * 109.46951 * 299.99975 * 23 11 10 26 26 C 1.53000 * 109.46955 * 59.99558 * 23 11 10 27 27 S 1.70989 * 124.91785 * 180.31267 * 2 1 3 28 28 H 1.08999 * 109.47199 * 89.97739 * 1 2 3 29 29 H 1.09000 * 109.47088 * 209.97429 * 1 2 3 30 30 H 1.08996 * 109.47176 * 329.97319 * 1 2 3 31 31 H 1.09002 * 109.47251 * 269.99806 * 5 4 3 32 32 H 1.08994 * 109.47562 * 30.00281 * 5 4 3 33 33 H 1.09003 * 109.47163 * 150.00725 * 5 4 3 34 34 H 1.08995 * 109.47529 * 329.99523 * 7 6 4 35 35 H 1.09002 * 109.47087 * 209.99633 * 7 6 4 36 36 H 0.96995 * 119.99419 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47002 * 174.99895 * 13 11 10 38 38 H 1.08993 * 109.46955 * 295.00332 * 13 11 10 39 39 H 0.96992 * 119.99966 * 359.97438 * 14 13 11 40 40 H 0.96993 * 120.00031 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.47004 * 60.00224 * 24 23 11 42 42 H 1.08998 * 109.47374 * 179.97438 * 24 23 11 43 43 H 1.09002 * 109.47721 * 300.00336 * 24 23 11 44 44 H 1.08996 * 109.47312 * 60.00123 * 25 23 11 45 45 H 1.09007 * 109.46984 * 179.97438 * 25 23 11 46 46 H 1.08993 * 109.47243 * 299.99585 * 25 23 11 47 47 H 1.09002 * 109.47044 * 60.00129 * 26 23 11 48 48 H 1.09004 * 109.47376 * 179.97438 * 26 23 11 49 49 H 1.08996 * 109.47552 * 300.00026 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5306 2.0245 0.0000 6 6 3.9353 -0.4007 0.0004 7 6 5.3574 -0.8994 0.0015 8 6 5.8302 -1.0661 1.4227 9 8 5.0860 -0.8051 2.3440 10 7 7.0803 -1.5052 1.6699 11 6 7.5401 -1.6667 3.0515 12 1 7.1005 -0.8874 3.6741 13 6 9.0655 -1.5563 3.0974 14 7 9.4822 -0.2913 2.4871 15 6 10.8117 0.0283 2.4139 16 1 11.5531 -0.6520 2.8064 17 6 11.2066 1.2267 1.8352 18 7 10.3031 2.0555 1.3564 19 14 13.0202 1.6630 1.7360 20 1 13.5841 1.1486 0.4621 21 1 13.1778 3.1387 1.7869 22 1 13.7406 1.0485 2.8799 23 6 7.1121 -3.0393 3.5743 24 6 7.5928 -3.2082 5.0169 25 6 5.5868 -3.1496 3.5283 26 6 7.7291 -4.1330 2.7003 27 16 2.4857 -1.4020 -0.0077 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 4.7671 2.3000 -1.0278 32 1 4.0904 2.8795 0.5131 33 1 5.4431 1.7225 0.5142 34 1 5.9953 -0.1798 -0.5116 35 1 5.4061 -1.8594 -0.5125 36 1 7.6754 -1.7143 0.9331 37 1 9.4009 -1.5874 4.1341 38 1 9.5066 -2.3876 2.5476 39 1 8.8164 0.3194 2.1344 40 1 10.5791 2.8927 0.9517 41 1 7.1535 -2.4290 5.6399 42 1 7.2875 -4.1860 5.3896 43 1 8.6795 -3.1297 5.0494 44 1 5.2447 -3.0296 2.5004 45 1 5.2819 -4.1278 3.9004 46 1 5.1472 -2.3705 4.1509 47 1 8.8158 -4.0544 2.7330 48 1 7.4246 -5.1111 3.0730 49 1 7.3870 -4.0130 1.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486406251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = -19.693275 kcal Electronic energy + Delta-G solvation = -28341.377929 eV Core-core repulsion = 24622.200144 eV Total energy + Delta-G solvation = -3719.177785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48147 -40.74023 -38.68014 -36.18001 -34.80687 -34.51644 -32.97803 -31.67046 -30.08527 -29.31213 -28.13343 -27.92702 -26.56412 -25.42710 -23.66645 -23.09728 -21.74543 -19.95118 -19.74684 -19.02233 -18.90840 -18.02628 -17.18498 -16.89365 -16.42373 -16.05718 -15.87504 -15.48518 -15.38554 -14.85267 -14.77124 -14.72003 -14.44002 -14.28601 -14.14954 -14.06959 -13.63372 -13.54436 -13.25866 -13.02268 -13.00064 -12.94816 -12.90054 -12.82735 -12.73317 -12.50454 -12.34390 -12.18085 -12.05925 -12.00215 -11.73673 -11.61535 -11.28266 -10.96822 -10.81929 -10.61444 -10.16905 -9.84116 -9.48992 -8.96221 -7.91896 -5.20491 -0.28458 0.39912 0.75207 1.49265 1.50251 1.58283 1.71228 1.75258 2.36470 2.57609 3.16295 3.42389 3.64645 3.67895 3.81990 3.97238 4.04256 4.06536 4.12379 4.27979 4.37276 4.46028 4.47331 4.54090 4.56190 4.64698 4.66639 4.68846 4.80081 4.83090 4.85448 4.92971 4.96909 4.97397 5.07595 5.08511 5.09826 5.18712 5.25791 5.32793 5.33513 5.46341 5.53105 5.57459 5.68640 6.29010 6.64948 6.79230 7.34681 7.36698 8.10535 8.34629 9.30839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003507 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.596760 B = 7981.086074 C =10000.114164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.504 5.504 4 C 0.058 3.942 5 C -0.077 4.077 6 C -0.216 4.216 7 C -0.061 4.061 8 C 0.515 3.485 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.161 3.839 12 H 0.050 0.950 13 C 0.145 3.855 14 N -0.741 5.741 15 C -0.241 4.241 16 H 0.077 0.923 17 C -0.071 4.071 18 N -0.965 5.965 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.272 1.272 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.136 4.136 27 S 0.154 5.846 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.409 0.591 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -13.456 -3.867 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.242 4.242 3 N -0.220 5.220 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.337 4.337 7 C -0.103 4.103 8 C 0.302 3.698 9 O -0.444 6.444 10 N -0.354 5.354 11 C 0.056 3.944 12 H 0.069 0.931 13 C 0.018 3.982 14 N -0.384 5.384 15 C -0.373 4.373 16 H 0.095 0.905 17 C -0.263 4.263 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.197 1.197 23 C -0.072 4.072 24 C -0.198 4.198 25 C -0.175 4.175 26 C -0.193 4.193 27 S 0.410 5.590 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.245 0.755 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.170 -13.885 -3.174 22.309 hybrid contribution 1.731 1.831 -0.313 2.539 sum -15.439 -12.054 -3.487 19.895 Atomic orbital electron populations 1.20614 0.82605 1.05128 1.05226 1.27602 1.03236 0.90927 1.02403 1.66142 1.04758 1.33058 1.18027 1.20275 0.90450 0.94744 1.01845 1.20322 0.95467 0.94459 1.03344 1.25101 0.99561 0.95837 1.13205 1.20098 0.90202 1.05522 0.94491 1.20651 0.81710 0.76054 0.91430 1.90697 1.55545 1.51044 1.47067 1.45841 1.13863 1.66783 1.08909 1.21022 0.93600 0.96979 0.82793 0.93127 1.21212 0.91551 0.88663 0.96726 1.42514 1.04433 1.19926 1.71568 1.19584 0.85173 1.01571 1.30981 0.90541 1.25478 1.01207 0.97480 1.02168 1.69811 1.33446 1.11635 1.46638 0.85214 0.80648 0.76364 0.77944 1.21230 1.22762 1.19719 1.20847 0.96009 0.93853 0.96458 1.21884 1.01407 1.02122 0.94345 1.21748 0.94078 1.00584 1.01125 1.21867 1.00744 0.97507 0.99215 1.83465 0.96208 1.11296 1.68038 0.87743 0.88136 0.89392 0.89204 0.91304 0.91864 0.85998 0.84956 0.75533 0.94953 0.93683 0.79369 0.94182 0.93739 0.90721 0.92112 0.93729 0.92022 0.94564 0.92206 0.91325 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.46 71.23 0.75 -0.35 16 2 C 0.04 0.85 7.39 88.52 0.65 1.51 16 3 N -0.50 -15.20 10.53 -179.41 -1.89 -17.09 16 4 C 0.06 1.78 6.74 41.52 0.28 2.06 16 5 C -0.08 -2.27 9.82 71.24 0.70 -1.57 16 6 C -0.22 -5.91 5.08 24.64 0.13 -5.78 16 7 C -0.06 -1.49 5.63 29.10 0.16 -1.33 16 8 C 0.52 15.80 6.18 87.66 0.54 16.34 16 9 O -0.56 -21.17 13.16 -3.04 -0.04 -21.21 16 10 N -0.70 -20.89 3.64 -442.52 -1.61 -22.50 16 11 C 0.16 5.22 1.69 44.99 0.08 5.30 16 12 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 13 C 0.14 5.35 5.10 86.38 0.44 5.79 16 14 N -0.74 -35.61 5.43 -343.43 -1.87 -37.48 16 15 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 16 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 18 N -0.96 -57.41 13.06 21.65 0.28 -57.12 16 19 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.07 -1.79 0.62 -52.19 -0.03 -1.83 16 24 C -0.14 -3.34 8.12 71.98 0.58 -2.76 16 25 C -0.12 -3.13 7.00 71.98 0.50 -2.63 16 26 C -0.14 -2.90 7.97 71.98 0.57 -2.33 16 27 S 0.15 3.43 23.18 -56.49 -1.31 2.12 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.04 7.35 -2.39 -0.02 2.02 16 34 H 0.12 2.87 7.43 -2.39 -0.02 2.85 16 35 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.41 11.23 8.60 -92.71 -0.80 10.43 16 37 H 0.03 1.23 6.71 -2.39 -0.02 1.21 16 38 H 0.05 1.55 6.17 -2.39 -0.01 1.54 16 39 H 0.37 19.52 7.33 -92.71 -0.68 18.84 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.47 6.54 -2.39 -0.02 1.45 16 44 H 0.04 1.23 5.77 -2.39 -0.01 1.22 16 45 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.04 1.13 7.53 -2.39 -0.02 1.11 16 47 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.17 7.60 -2.39 -0.02 1.15 16 Total: -1.00 -70.32 399.67 1.75 -68.57 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.51 Total: 40.69 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.66 Total: -3.07 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -5.08 Total: -134.19 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.04 Total: -21.21 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.31 Total: 2.12 kcal Total: -70.32 1.75 -68.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486406251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.879 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds