Wall clock time and date at job start Tue Mar 31 2020 23:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99660 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00409 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47423 * 179.97438 * 9 7 6 11 11 C 1.33636 * 122.74628 * 85.02552 * 10 9 7 12 12 S 1.76196 * 107.92543 * 180.02562 * 11 10 9 13 13 C 1.70981 * 90.28037 * 0.02562 * 12 11 10 14 14 C 1.50702 * 124.91563 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47076 * 239.97408 * 14 13 12 16 16 C 1.53001 * 109.47120 * 359.97438 * 14 13 12 17 17 C 1.53003 * 109.47041 * 119.97525 * 14 13 12 18 18 N 1.29028 * 110.16703 * 359.72954 * 13 12 11 19 19 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 20 20 C 1.36936 * 120.00357 * 84.99193 * 19 3 2 21 21 H 1.08005 * 119.99682 * 0.02562 * 20 19 3 22 22 C 1.38810 * 120.00266 * 180.02562 * 20 19 3 23 23 N 1.31621 * 119.99911 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00119 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47238 * 89.99888 * 24 22 20 26 26 H 1.48496 * 109.47313 * 210.00120 * 24 22 20 27 27 H 1.48504 * 109.46881 * 329.99883 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 34 34 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 35 35 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47071 * 300.00711 * 9 7 6 37 37 H 1.09000 * 109.46745 * 60.00102 * 9 7 6 38 38 H 1.08003 * 126.03840 * 0.02562 * 11 10 9 39 39 H 1.08993 * 109.47344 * 60.00059 * 15 14 13 40 40 H 1.08998 * 109.47337 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47047 * 299.99832 * 15 14 13 42 42 H 1.08989 * 109.47234 * 59.99929 * 16 14 13 43 43 H 1.09003 * 109.46869 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.46561 * 299.99776 * 16 14 13 45 45 H 1.08999 * 109.47434 * 59.99953 * 17 14 13 46 46 H 1.09001 * 109.47016 * 180.02562 * 17 14 13 47 47 H 1.09003 * 109.47209 * 299.99831 * 17 14 13 48 48 H 0.97001 * 120.00250 * 264.99821 * 19 3 2 49 49 H 0.97003 * 120.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2564 9 6 5.8984 4.4745 -0.0379 10 6 7.4003 4.4763 0.0861 11 6 8.2116 4.2500 -0.9514 12 16 9.8727 4.3424 -0.3712 13 6 9.3111 4.6755 1.2090 14 6 10.1948 4.9078 2.4074 15 6 9.8903 3.8570 3.4769 16 6 11.6622 4.7982 1.9879 17 6 9.9292 6.3040 2.9740 18 7 8.0213 4.7054 1.2256 19 7 1.6525 2.0975 -1.2517 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6451 -0.5381 22 6 0.0483 3.2937 -2.5550 23 7 -1.1403 3.8477 -2.6673 24 14 1.2408 3.3420 -3.9920 25 1 1.0369 2.1437 -4.8450 26 1 0.9993 4.5679 -4.7946 27 1 2.6342 3.3530 -3.4787 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0375 1.0960 34 1 3.9955 0.8310 -0.6660 35 1 3.4411 3.5483 -0.1308 36 1 5.6130 4.8810 -1.0082 37 1 5.4682 5.0879 0.7538 38 1 7.9034 4.0463 -1.9663 39 1 10.0795 2.8623 3.0734 40 1 10.5291 4.0252 4.3439 41 1 8.8450 3.9351 3.7758 42 1 11.8791 5.5467 1.2261 43 1 12.3013 4.9657 2.8549 44 1 11.8513 3.8034 1.5843 45 1 8.8839 6.3821 3.2728 46 1 10.5688 6.4721 3.8405 47 1 10.1462 7.0526 2.2120 48 1 2.2720 2.1232 -1.9977 49 1 -1.3969 4.2815 -3.4961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495079850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:40 Heat of formation + Delta-G solvation = -3.013827 kcal Electronic energy + Delta-G solvation = -27138.364220 eV Core-core repulsion = 23419.909710 eV Total energy + Delta-G solvation = -3718.454509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42395 -39.17847 -37.15631 -36.71369 -33.77654 -32.40673 -31.77231 -30.29229 -28.84614 -27.77579 -27.54892 -27.43048 -25.13426 -23.51078 -22.44325 -20.78154 -20.25081 -19.70105 -19.43445 -17.83777 -17.57636 -16.76300 -16.02901 -15.64890 -15.47093 -15.02928 -14.76057 -14.40866 -14.18542 -14.06353 -13.92750 -13.40891 -13.27231 -13.15555 -13.02440 -12.83492 -12.66495 -12.53821 -12.45976 -12.06651 -12.00065 -11.73001 -11.58681 -11.39937 -11.34193 -11.23160 -11.15861 -11.01827 -10.72516 -10.42963 -10.32195 -10.02988 -9.73263 -9.68147 -9.51964 -9.42892 -9.01675 -8.79231 -8.75469 -7.37556 -5.84430 -3.20493 0.64687 1.27056 1.64782 2.63861 2.84716 3.29690 3.34601 3.40193 3.53410 3.79417 4.40553 4.51496 4.56137 4.60874 4.86175 5.02654 5.11670 5.18734 5.19545 5.20548 5.28916 5.30594 5.38507 5.42226 5.42528 5.51580 5.58779 5.60536 5.67549 5.73975 5.76812 5.87571 5.89841 5.93751 6.00351 6.05077 6.13379 6.26739 6.46482 6.52084 6.57481 6.79078 6.92750 7.27354 7.68338 7.80872 7.91527 8.33778 8.46083 9.11777 9.84098 10.03707 11.33226 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002468 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.599433 B =11340.442329 C =12158.326921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.113 3.887 6 N -0.716 5.716 7 C 0.515 3.485 8 O -0.545 6.545 9 C -0.071 4.071 10 C 0.095 3.905 11 C -0.248 4.248 12 S 0.114 5.886 13 C 0.061 3.939 14 C 0.012 3.988 15 C -0.134 4.134 16 C -0.153 4.153 17 C -0.133 4.133 18 N -0.459 5.459 19 N -0.746 5.746 20 C -0.241 4.241 21 H 0.095 0.905 22 C 0.007 3.993 23 N -0.931 5.931 24 Si 0.881 3.119 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.174 0.826 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.362 0.638 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.037 2.746 9.051 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.011 4.011 6 N -0.368 5.368 7 C 0.300 3.700 8 O -0.423 6.423 9 C -0.114 4.114 10 C -0.037 4.037 11 C -0.387 4.387 12 S 0.371 5.629 13 C -0.218 4.218 14 C 0.008 3.992 15 C -0.193 4.193 16 C -0.211 4.211 17 C -0.192 4.192 18 N -0.172 5.172 19 N -0.390 5.390 20 C -0.371 4.371 21 H 0.112 0.888 22 C -0.189 4.189 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.204 1.204 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.247 0.753 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.192 0.808 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.195 0.805 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.052 2.182 9.212 26.781 hybrid contribution -0.649 0.264 -1.519 1.673 sum 24.403 2.445 7.692 25.703 Atomic orbital electron populations 1.21782 0.95189 0.99717 1.03781 1.22034 0.97357 0.97863 1.00094 1.20544 0.89856 0.92970 0.90755 0.91932 1.21701 0.95458 0.82619 1.01339 1.45974 1.07002 1.10847 1.72985 1.20288 0.82520 0.90487 0.76678 1.90683 1.56063 1.46329 1.49215 1.20209 0.89329 0.96177 1.05693 1.19421 0.96256 1.00956 0.87074 1.26772 0.94976 1.12021 1.04947 1.83778 1.08460 1.66096 1.04599 1.26972 0.93221 1.03165 0.98456 1.19218 0.92160 0.97729 0.90130 1.21835 1.02883 0.97551 0.97020 1.22022 0.94124 1.02656 1.02335 1.21836 1.02966 0.93773 1.00643 1.65878 1.07207 1.16411 1.27725 1.42828 1.16803 1.67665 1.11720 1.19055 0.90588 1.27621 0.99835 0.88750 1.24661 0.96385 1.00377 0.97523 1.69692 1.19305 1.42086 1.26732 0.86621 0.81044 0.77317 0.83877 1.21228 1.21863 1.20411 0.89355 0.93861 0.94862 0.93564 0.92695 0.91552 0.92002 0.75322 0.87117 0.86988 0.80841 0.92443 0.91719 0.91367 0.91858 0.90731 0.91821 0.91359 0.91692 0.92554 0.80546 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.20 5.61 -26.74 -0.15 -2.35 16 3 C 0.17 2.95 2.59 -67.94 -0.18 2.78 16 4 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.82 5.23 -4.05 -0.02 1.80 16 6 N -0.72 -11.14 5.39 -60.30 -0.32 -11.46 16 7 C 0.52 8.17 7.82 -10.98 -0.09 8.09 16 8 O -0.55 -10.45 16.03 5.56 0.09 -10.37 16 9 C -0.07 -0.92 6.11 -29.03 -0.18 -1.09 16 10 C 0.09 1.30 5.23 -84.23 -0.44 0.86 16 11 C -0.25 -3.10 11.14 29.12 0.32 -2.77 16 12 S 0.11 1.20 21.57 -107.50 -2.32 -1.12 16 13 C 0.06 0.70 5.78 -13.45 -0.08 0.63 16 14 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 15 C -0.13 -1.18 8.45 37.16 0.31 -0.86 16 16 C -0.15 -1.00 7.54 37.16 0.28 -0.72 16 17 C -0.13 -1.04 8.45 37.16 0.31 -0.72 16 18 N -0.46 -6.35 10.51 -8.06 -0.08 -6.43 16 19 N -0.75 -15.74 4.31 -53.43 -0.23 -15.97 16 20 C -0.24 -6.11 8.23 -15.06 -0.12 -6.24 16 21 H 0.09 2.58 7.55 -52.48 -0.40 2.19 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -27.70 13.97 55.49 0.78 -26.92 16 24 Si 0.88 20.97 27.74 -169.99 -4.71 16.26 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 28 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.41 6.26 8.14 -40.82 -0.33 5.92 16 36 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.39 7.92 -51.94 -0.41 -0.02 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.43 7.92 -51.93 -0.41 0.01 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -31.74 407.88 -9.04 -40.77 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.45 Total: 11.96 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.14 Total: -60.79 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.32 Total: -1.12 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.74 -9.04 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495079850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.760 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds