Wall clock time and date at job start Tue Mar 31 2020 23:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99660 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00409 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47423 * 179.97438 * 9 7 6 11 11 C 1.33636 * 122.74628 * 85.02552 * 10 9 7 12 12 S 1.76196 * 107.92543 * 180.02562 * 11 10 9 13 13 C 1.70981 * 90.28037 * 0.02562 * 12 11 10 14 14 C 1.50702 * 124.91563 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47076 * 239.97408 * 14 13 12 16 16 C 1.53001 * 109.47120 * 359.97438 * 14 13 12 17 17 C 1.53003 * 109.47041 * 119.97525 * 14 13 12 18 18 N 1.29028 * 110.16703 * 359.72954 * 13 12 11 19 19 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 20 20 C 1.36936 * 120.00357 * 84.99193 * 19 3 2 21 21 H 1.08005 * 119.99682 * 0.02562 * 20 19 3 22 22 C 1.38810 * 120.00266 * 180.02562 * 20 19 3 23 23 N 1.31621 * 119.99911 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00119 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47238 * 89.99888 * 24 22 20 26 26 H 1.48496 * 109.47313 * 210.00120 * 24 22 20 27 27 H 1.48504 * 109.46881 * 329.99883 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 34 34 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 35 35 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47071 * 300.00711 * 9 7 6 37 37 H 1.09000 * 109.46745 * 60.00102 * 9 7 6 38 38 H 1.08003 * 126.03840 * 0.02562 * 11 10 9 39 39 H 1.08993 * 109.47344 * 60.00059 * 15 14 13 40 40 H 1.08998 * 109.47337 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47047 * 299.99832 * 15 14 13 42 42 H 1.08989 * 109.47234 * 59.99929 * 16 14 13 43 43 H 1.09003 * 109.46869 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.46561 * 299.99776 * 16 14 13 45 45 H 1.08999 * 109.47434 * 59.99953 * 17 14 13 46 46 H 1.09001 * 109.47016 * 180.02562 * 17 14 13 47 47 H 1.09003 * 109.47209 * 299.99831 * 17 14 13 48 48 H 0.97001 * 120.00250 * 264.99821 * 19 3 2 49 49 H 0.97003 * 120.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2564 9 6 5.8984 4.4745 -0.0379 10 6 7.4003 4.4763 0.0861 11 6 8.2116 4.2500 -0.9514 12 16 9.8727 4.3424 -0.3712 13 6 9.3111 4.6755 1.2090 14 6 10.1948 4.9078 2.4074 15 6 9.8903 3.8570 3.4769 16 6 11.6622 4.7982 1.9879 17 6 9.9292 6.3040 2.9740 18 7 8.0213 4.7054 1.2256 19 7 1.6525 2.0975 -1.2517 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6451 -0.5381 22 6 0.0483 3.2937 -2.5550 23 7 -1.1403 3.8477 -2.6673 24 14 1.2408 3.3420 -3.9920 25 1 1.0369 2.1437 -4.8450 26 1 0.9993 4.5679 -4.7946 27 1 2.6342 3.3530 -3.4787 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0375 1.0960 34 1 3.9955 0.8310 -0.6660 35 1 3.4411 3.5483 -0.1308 36 1 5.6130 4.8810 -1.0082 37 1 5.4682 5.0879 0.7538 38 1 7.9034 4.0463 -1.9663 39 1 10.0795 2.8623 3.0734 40 1 10.5291 4.0252 4.3439 41 1 8.8450 3.9351 3.7758 42 1 11.8791 5.5467 1.2261 43 1 12.3013 4.9657 2.8549 44 1 11.8513 3.8034 1.5843 45 1 8.8839 6.3821 3.2728 46 1 10.5688 6.4721 3.8405 47 1 10.1462 7.0526 2.2120 48 1 2.2720 2.1232 -1.9977 49 1 -1.3969 4.2815 -3.4961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495079850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:39 Heat of formation + Delta-G solvation = -23.680944 kcal Electronic energy + Delta-G solvation = -27139.260413 eV Core-core repulsion = 23419.909710 eV Total energy + Delta-G solvation = -3719.350703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41863 -40.34293 -38.44036 -37.67074 -35.26031 -34.17743 -32.78025 -32.07746 -30.06948 -28.64939 -28.32692 -28.18751 -26.05856 -25.19182 -23.95278 -21.89294 -21.68418 -20.79454 -20.27961 -19.61296 -18.50961 -18.05171 -17.12218 -17.09508 -16.56809 -16.16782 -15.95284 -15.74491 -15.14735 -15.10269 -14.93013 -14.68881 -14.64460 -14.45131 -14.25240 -14.17035 -14.06016 -13.37959 -13.10974 -13.08479 -13.02531 -12.87888 -12.80921 -12.62472 -12.43555 -12.33598 -12.23163 -12.10738 -11.97984 -11.90210 -11.89301 -11.59528 -11.42010 -11.07172 -10.89269 -10.56213 -10.31081 -10.06088 -9.68794 -9.28995 -7.94341 -5.26802 -0.24041 0.43054 0.76572 1.39947 1.43120 1.49713 1.61861 1.66248 2.38809 2.53001 2.98771 3.37479 3.57768 3.63859 3.85495 3.89833 3.95032 3.97215 4.11784 4.22454 4.31515 4.36988 4.43934 4.46994 4.54029 4.66297 4.72520 4.73427 4.77020 4.81724 4.83228 4.95301 4.96164 4.98287 5.06412 5.09458 5.12149 5.18593 5.25972 5.34965 5.40253 5.44555 5.53234 5.71708 5.87987 6.27929 6.55675 6.79532 7.13897 7.21961 7.88153 8.07456 9.26661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002468 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.599433 B =11340.442329 C =12158.326921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.517 3.483 8 O -0.580 6.580 9 C -0.067 4.067 10 C 0.073 3.927 11 C -0.267 4.267 12 S 0.155 5.845 13 C 0.050 3.950 14 C 0.007 3.993 15 C -0.131 4.131 16 C -0.151 4.151 17 C -0.129 4.129 18 N -0.488 5.488 19 N -0.745 5.745 20 C -0.204 4.204 21 H 0.068 0.932 22 C -0.062 4.062 23 N -0.984 5.984 24 Si 0.943 3.057 25 H -0.292 1.292 26 H -0.303 1.303 27 H -0.249 1.249 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.413 0.587 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.185 0.815 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.363 0.637 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.062 2.418 9.633 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.366 5.366 7 C 0.304 3.696 8 O -0.460 6.460 9 C -0.109 4.109 10 C -0.059 4.059 11 C -0.406 4.406 12 S 0.412 5.588 13 C -0.228 4.228 14 C 0.004 3.996 15 C -0.190 4.190 16 C -0.209 4.209 17 C -0.188 4.188 18 N -0.203 5.203 19 N -0.388 5.388 20 C -0.335 4.335 21 H 0.085 0.915 22 C -0.253 4.253 23 N -0.635 5.635 24 Si 0.772 3.228 25 H -0.219 1.219 26 H -0.230 1.230 27 H -0.174 1.174 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.249 0.751 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.202 0.798 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.197 0.803 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 28.127 1.832 9.825 29.850 hybrid contribution -1.566 0.287 -1.561 2.230 sum 26.560 2.119 8.265 27.897 Atomic orbital electron populations 1.21692 0.96298 1.00440 1.01631 1.21966 0.96176 0.97083 1.01658 1.20668 0.91071 0.93294 0.88823 0.92286 1.21570 0.93790 0.83052 1.01820 1.45983 1.07162 1.10699 1.72789 1.20744 0.82050 0.91334 0.75515 1.90662 1.56805 1.47679 1.50852 1.20236 0.89257 0.94227 1.07215 1.19610 0.96743 1.01982 0.87576 1.27068 0.96268 1.11824 1.05414 1.83552 1.06809 1.65061 1.03396 1.27593 0.93171 1.02137 0.99936 1.19425 0.93008 0.98069 0.89146 1.21813 1.02011 0.97147 0.98005 1.22033 0.92677 1.02712 1.03462 1.21808 1.02272 0.93206 1.01510 1.65907 1.08376 1.17771 1.28200 1.42789 1.15262 1.67628 1.13166 1.18945 0.91179 1.25099 0.98300 0.91451 1.25317 0.97989 1.01542 1.00427 1.69860 1.21738 1.44650 1.27245 0.85595 0.80493 0.76253 0.80459 1.21897 1.23007 1.17366 0.93459 0.93917 0.92791 0.90450 0.92621 0.90466 0.92300 0.75052 0.85022 0.85995 0.79790 0.93390 0.89179 0.93616 0.91356 0.88534 0.92040 0.93257 0.89406 0.92411 0.80336 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.18 71.98 0.66 -4.31 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 3 C 0.17 5.66 2.59 44.99 0.12 5.78 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.67 5.23 86.38 0.45 4.12 16 6 N -0.71 -21.03 5.39 -463.07 -2.49 -23.53 16 7 C 0.52 15.73 7.82 87.66 0.69 16.41 16 8 O -0.58 -21.70 16.03 -3.02 -0.05 -21.75 16 9 C -0.07 -1.64 6.11 29.10 0.18 -1.46 16 10 C 0.07 1.94 5.23 41.52 0.22 2.16 16 11 C -0.27 -6.34 11.14 66.78 0.74 -5.59 16 12 S 0.15 3.02 21.57 -56.49 -1.22 1.80 16 13 C 0.05 1.11 5.78 88.52 0.51 1.62 16 14 C 0.01 0.12 0.99 -52.93 -0.05 0.06 16 15 C -0.13 -2.15 8.45 71.98 0.61 -1.54 16 16 C -0.15 -1.58 7.54 71.98 0.54 -1.04 16 17 C -0.13 -1.80 8.45 71.98 0.61 -1.19 16 18 N -0.49 -13.29 10.51 -179.40 -1.89 -15.17 16 19 N -0.74 -30.52 4.31 -322.96 -1.39 -31.92 16 20 C -0.20 -10.40 8.23 84.03 0.69 -9.71 16 21 H 0.07 3.78 7.55 -2.91 -0.02 3.76 16 22 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 23 N -0.98 -60.27 13.97 21.65 0.30 -59.97 16 24 Si 0.94 43.39 27.74 68.60 1.90 45.29 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 28 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.41 11.89 8.14 -92.71 -0.75 11.13 16 36 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.68 7.92 -2.38 -0.02 0.66 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.36 14.83 5.66 -92.71 -0.52 14.30 16 49 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -69.93 407.88 1.37 -68.56 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.40 Total: 38.10 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 6.60 Total: -1.41 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -5.47 Total: -130.59 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.29 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.22 Total: 1.80 kcal Total: -69.93 1.37 -68.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495079850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.877 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds