Wall clock time and date at job start Tue Mar 31 2020 22:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29433 * 124.80690 * 2 1 4 4 C 1.30940 * 117.36269 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.90263 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47399 * 269.96261 * 5 4 3 7 7 C 1.53007 * 109.47189 * 175.00177 * 6 5 4 8 8 C 1.53007 * 109.47072 * 294.99846 * 6 5 4 9 9 C 1.35661 * 114.19598 * 0.02562 * 4 3 2 10 10 C 1.46678 * 126.13447 * 179.97438 * 9 4 3 11 11 O 1.21689 * 120.00031 * 357.74449 * 10 9 4 12 12 N 1.34779 * 120.00349 * 177.74332 * 10 9 4 13 13 C 1.46499 * 119.99920 * 353.88899 * 12 10 9 14 14 C 1.46501 * 119.99948 * 173.60742 * 12 10 9 15 15 H 1.08993 * 109.47091 * 0.02562 * 14 12 10 16 16 C 1.53008 * 109.46616 * 120.00509 * 14 12 10 17 17 C 1.53002 * 109.47046 * 239.99917 * 14 12 10 18 18 N 1.46504 * 109.46834 * 55.00621 * 17 14 12 19 19 C 1.36937 * 119.99620 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00033 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00024 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47256 * 119.99998 * 23 21 19 26 26 H 1.48494 * 109.47652 * 240.00301 * 23 21 19 27 27 S 1.70960 * 124.80327 * 180.31862 * 2 1 3 28 28 H 1.08998 * 109.47111 * 89.99913 * 1 2 3 29 29 H 1.08996 * 109.47427 * 209.99734 * 1 2 3 30 30 H 1.09002 * 109.46980 * 329.99923 * 1 2 3 31 31 H 1.08996 * 109.47341 * 29.96623 * 5 4 3 32 32 H 1.09006 * 109.47145 * 149.96485 * 5 4 3 33 33 H 1.09001 * 109.47541 * 55.00125 * 6 5 4 34 34 H 1.08994 * 109.47080 * 59.99944 * 7 6 5 35 35 H 1.09000 * 109.46918 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46710 * 299.99695 * 7 6 5 37 37 H 1.08993 * 109.46935 * 299.99910 * 8 6 5 38 38 H 1.08999 * 109.46881 * 60.00069 * 8 6 5 39 39 H 1.09004 * 109.47050 * 180.02562 * 8 6 5 40 40 H 1.09001 * 109.47526 * 84.64653 * 13 12 10 41 41 H 1.08997 * 109.47496 * 204.65034 * 13 12 10 42 42 H 1.09004 * 109.46658 * 324.65023 * 13 12 10 43 43 H 1.09001 * 109.46810 * 180.02562 * 16 14 12 44 44 H 1.08997 * 109.47167 * 299.99594 * 16 14 12 45 45 H 1.09000 * 109.46939 * 60.00007 * 16 14 12 46 46 H 1.09002 * 109.46726 * 175.00128 * 17 14 12 47 47 H 1.08993 * 109.47132 * 295.00247 * 17 14 12 48 48 H 0.96996 * 119.99824 * 359.97438 * 18 17 14 49 49 H 0.96992 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 -0.0005 5 6 4.5197 2.0416 0.0000 6 6 4.8502 2.4308 -1.4423 7 6 5.7417 3.6743 -1.4435 8 6 5.5848 1.2761 -2.1265 9 6 3.9351 -0.4059 -0.0015 10 6 5.3188 -0.8927 -0.0028 11 8 6.2422 -0.1013 -0.0446 12 7 5.5675 -2.2166 0.0422 13 6 4.4648 -3.1632 0.2272 14 6 6.9398 -2.7093 -0.1001 15 1 7.6169 -1.8655 -0.2322 16 6 7.3349 -3.4880 1.1564 17 6 7.0273 -3.6299 -1.3191 18 7 6.5357 -2.9205 -2.5029 19 6 6.5191 -3.5487 -3.7196 20 1 6.8680 -4.5671 -3.8064 21 6 6.0528 -2.8768 -4.8412 22 7 5.6271 -1.6358 -4.7354 23 14 6.0308 -3.7333 -6.5011 24 1 6.5580 -5.1137 -6.3529 25 1 4.6373 -3.7883 -7.0114 26 1 6.8791 -2.9793 -7.4587 27 16 2.4827 -1.4038 -0.0078 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 4.0767 2.8946 0.5140 32 1 5.4332 1.7422 0.5139 33 1 3.9274 2.6447 -1.9815 34 1 6.6645 3.4604 -0.9044 35 1 5.9767 3.9518 -2.4711 36 1 5.2184 4.4969 -0.9561 37 1 6.5076 1.0622 -1.5874 38 1 4.9497 0.3902 -2.1256 39 1 5.8206 1.5535 -3.1539 40 1 4.0081 -3.3823 -0.7379 41 1 4.8469 -4.0849 0.6659 42 1 3.7189 -2.7266 0.8914 43 1 8.3561 -3.8542 1.0507 44 1 7.2725 -2.8322 2.0248 45 1 6.6577 -4.3318 1.2888 46 1 8.0645 -3.9255 -1.4773 47 1 6.4184 -4.5176 -1.1484 48 1 6.2220 -2.0060 -2.4249 49 1 5.3017 -1.1662 -5.5192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496105218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:36 Heat of formation + Delta-G solvation = 17.008912 kcal Electronic energy + Delta-G solvation = -29444.641766 eV Core-core repulsion = 25727.055507 eV Total energy + Delta-G solvation = -3717.586258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40245 -39.20233 -36.52872 -35.49672 -34.05699 -32.51795 -31.67228 -30.12124 -28.64071 -27.48183 -26.88077 -26.42445 -25.59468 -23.02896 -22.71287 -22.00949 -19.82894 -19.71945 -18.39680 -17.95423 -17.07101 -16.35910 -15.88503 -15.63283 -14.92069 -14.70198 -14.57210 -14.16454 -13.81768 -13.72008 -13.64138 -13.37762 -13.24042 -12.86466 -12.76774 -12.54846 -12.44140 -12.29593 -12.21519 -12.00225 -11.94061 -11.79104 -11.48760 -11.34274 -10.98266 -10.85944 -10.78192 -10.48147 -10.38036 -10.26094 -10.20766 -10.00499 -9.69837 -9.51338 -9.27805 -9.15980 -8.86834 -8.54014 -8.15834 -6.88859 -5.71444 -3.01189 0.47978 1.40472 1.79882 2.67632 3.20790 3.43406 3.48988 3.51413 3.51757 4.12598 4.59491 4.78669 4.95450 5.12094 5.17618 5.25514 5.27652 5.33803 5.35395 5.40792 5.52301 5.54516 5.58923 5.60295 5.61384 5.77690 5.85127 5.99425 6.01548 6.05790 6.07532 6.13814 6.15975 6.21497 6.35067 6.43714 6.45414 6.50816 6.58238 6.69800 6.83525 6.89899 7.00017 7.34229 7.61459 7.72058 7.88312 8.44960 8.49134 9.56998 10.14729 10.50477 11.49619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.004806 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.250427 B = 5824.839449 C = 6223.497431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.481 5.481 4 C 0.152 3.848 5 C -0.048 4.048 6 C -0.082 4.082 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.284 4.284 10 C 0.598 3.402 11 O -0.515 6.515 12 N -0.593 5.593 13 C 0.068 3.932 14 C 0.130 3.870 15 H 0.103 0.897 16 C -0.156 4.156 17 C 0.143 3.857 18 N -0.728 5.728 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.292 1.292 27 S 0.187 5.813 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.029 0.971 47 H 0.020 0.980 48 H 0.386 0.614 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 1.508 14.853 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.253 4.253 3 N -0.196 5.196 4 C 0.014 3.986 5 C -0.088 4.088 6 C -0.101 4.101 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.408 4.408 10 C 0.386 3.614 11 O -0.393 6.393 12 N -0.325 5.325 13 C -0.078 4.078 14 C 0.027 3.973 15 H 0.121 0.879 16 C -0.214 4.214 17 C 0.014 3.986 18 N -0.372 5.372 19 C -0.373 4.373 20 H 0.086 0.914 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.734 3.266 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.219 1.219 27 S 0.446 5.554 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.038 0.962 48 H 0.221 0.779 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.183 1.190 14.693 16.398 hybrid contribution 0.129 0.358 -1.218 1.277 sum -7.054 1.548 13.474 15.287 Atomic orbital electron populations 1.20437 0.85538 1.03863 1.03910 1.27742 1.02301 0.94063 1.01176 1.66092 1.04408 1.31949 1.17165 1.20510 0.89812 0.93447 0.94793 1.20534 0.96550 0.92953 0.98716 1.20999 0.98654 0.96265 0.94211 1.21780 0.99690 0.96728 1.01571 1.21996 1.01460 0.96759 0.99279 1.25407 0.97760 0.97026 1.20604 1.16598 0.86129 0.82096 0.76577 1.90723 1.44474 1.54083 1.50032 1.47454 1.08187 1.05033 1.71841 1.21895 0.89276 0.94173 1.02417 1.21434 0.82115 0.98621 0.95163 0.87870 1.22076 1.01860 1.00175 0.97330 1.21023 0.97323 0.93663 0.86562 1.42296 1.76700 1.15193 1.03050 1.19204 1.35723 0.96775 0.85627 0.91351 1.24722 1.01943 0.96285 0.97697 1.69688 1.48386 1.10194 1.28692 0.86196 0.77089 0.78499 0.84841 1.20687 1.22031 1.21939 1.84294 0.95667 1.09325 1.66161 0.89480 0.90205 0.89579 0.91136 0.87998 0.92180 0.92488 0.92732 0.93408 0.90452 0.92842 0.93690 0.90823 0.89409 0.91643 0.91235 0.92494 0.92407 0.95317 0.96246 0.77927 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 36.00 0.38 -0.35 16 2 C 0.02 0.29 7.39 -13.29 -0.10 0.19 16 3 N -0.48 -7.81 10.50 -7.70 -0.08 -7.89 16 4 C 0.15 2.60 5.58 -83.89 -0.47 2.13 16 5 C -0.05 -0.77 4.82 -27.89 -0.13 -0.91 16 6 C -0.08 -1.39 2.91 -90.62 -0.26 -1.65 16 7 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 8 C -0.14 -2.83 7.61 37.16 0.28 -2.54 16 9 C -0.28 -4.86 5.26 -37.10 -0.20 -5.06 16 10 C 0.60 10.95 6.32 -12.85 -0.08 10.87 16 11 O -0.51 -10.25 10.13 5.20 0.05 -10.20 16 12 N -0.59 -9.83 2.24 -175.47 -0.39 -10.22 16 13 C 0.07 0.93 8.00 59.85 0.48 1.40 16 14 C 0.13 2.15 2.79 -67.92 -0.19 1.96 16 15 H 0.10 1.93 6.92 -51.93 -0.36 1.57 16 16 C -0.16 -1.91 9.19 37.16 0.34 -1.57 16 17 C 0.14 2.80 5.55 -4.04 -0.02 2.78 16 18 N -0.73 -18.32 5.43 -59.91 -0.33 -18.64 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.92 -27.72 13.06 55.49 0.72 -27.00 16 23 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 S 0.19 2.55 18.05 -107.50 -1.94 0.61 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.72 6.07 -51.93 -0.31 1.40 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.65 5.81 -51.93 -0.30 1.35 16 38 H 0.05 1.23 5.79 -51.93 -0.30 0.93 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.15 7.67 -51.93 -0.40 0.76 16 41 H 0.09 0.99 6.45 -51.93 -0.34 0.66 16 42 H 0.07 0.79 4.88 -25.54 -0.12 0.66 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.63 6.68 -51.93 -0.35 0.28 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.02 0.37 7.83 -51.93 -0.41 -0.03 16 48 H 0.39 10.50 7.06 -40.82 -0.29 10.21 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -32.64 389.82 -8.79 -41.43 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.79 Total: 10.21 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 0.12 Total: -1.64 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.08 Total: -63.75 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.05 Total: -10.20 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.94 Total: 0.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.64 -8.79 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496105218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.439 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds