Wall clock time and date at job start Tue Mar 31 2020 22:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29433 * 124.80690 * 2 1 4 4 C 1.30940 * 117.36269 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.90263 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47399 * 269.96261 * 5 4 3 7 7 C 1.53007 * 109.47189 * 175.00177 * 6 5 4 8 8 C 1.53007 * 109.47072 * 294.99846 * 6 5 4 9 9 C 1.35661 * 114.19598 * 0.02562 * 4 3 2 10 10 C 1.46678 * 126.13447 * 179.97438 * 9 4 3 11 11 O 1.21689 * 120.00031 * 357.74449 * 10 9 4 12 12 N 1.34779 * 120.00349 * 177.74332 * 10 9 4 13 13 C 1.46499 * 119.99920 * 353.88899 * 12 10 9 14 14 C 1.46501 * 119.99948 * 173.60742 * 12 10 9 15 15 H 1.08993 * 109.47091 * 0.02562 * 14 12 10 16 16 C 1.53008 * 109.46616 * 120.00509 * 14 12 10 17 17 C 1.53002 * 109.47046 * 239.99917 * 14 12 10 18 18 N 1.46504 * 109.46834 * 55.00621 * 17 14 12 19 19 C 1.36937 * 119.99620 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00033 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00024 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47256 * 119.99998 * 23 21 19 26 26 H 1.48494 * 109.47652 * 240.00301 * 23 21 19 27 27 S 1.70960 * 124.80327 * 180.31862 * 2 1 3 28 28 H 1.08998 * 109.47111 * 89.99913 * 1 2 3 29 29 H 1.08996 * 109.47427 * 209.99734 * 1 2 3 30 30 H 1.09002 * 109.46980 * 329.99923 * 1 2 3 31 31 H 1.08996 * 109.47341 * 29.96623 * 5 4 3 32 32 H 1.09006 * 109.47145 * 149.96485 * 5 4 3 33 33 H 1.09001 * 109.47541 * 55.00125 * 6 5 4 34 34 H 1.08994 * 109.47080 * 59.99944 * 7 6 5 35 35 H 1.09000 * 109.46918 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46710 * 299.99695 * 7 6 5 37 37 H 1.08993 * 109.46935 * 299.99910 * 8 6 5 38 38 H 1.08999 * 109.46881 * 60.00069 * 8 6 5 39 39 H 1.09004 * 109.47050 * 180.02562 * 8 6 5 40 40 H 1.09001 * 109.47526 * 84.64653 * 13 12 10 41 41 H 1.08997 * 109.47496 * 204.65034 * 13 12 10 42 42 H 1.09004 * 109.46658 * 324.65023 * 13 12 10 43 43 H 1.09001 * 109.46810 * 180.02562 * 16 14 12 44 44 H 1.08997 * 109.47167 * 299.99594 * 16 14 12 45 45 H 1.09000 * 109.46939 * 60.00007 * 16 14 12 46 46 H 1.09002 * 109.46726 * 175.00128 * 17 14 12 47 47 H 1.08993 * 109.47132 * 295.00247 * 17 14 12 48 48 H 0.96996 * 119.99824 * 359.97438 * 18 17 14 49 49 H 0.96992 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 -0.0005 5 6 4.5197 2.0416 0.0000 6 6 4.8502 2.4308 -1.4423 7 6 5.7417 3.6743 -1.4435 8 6 5.5848 1.2761 -2.1265 9 6 3.9351 -0.4059 -0.0015 10 6 5.3188 -0.8927 -0.0028 11 8 6.2422 -0.1013 -0.0446 12 7 5.5675 -2.2166 0.0422 13 6 4.4648 -3.1632 0.2272 14 6 6.9398 -2.7093 -0.1001 15 1 7.6169 -1.8655 -0.2322 16 6 7.3349 -3.4880 1.1564 17 6 7.0273 -3.6299 -1.3191 18 7 6.5357 -2.9205 -2.5029 19 6 6.5191 -3.5487 -3.7196 20 1 6.8680 -4.5671 -3.8064 21 6 6.0528 -2.8768 -4.8412 22 7 5.6271 -1.6358 -4.7354 23 14 6.0308 -3.7333 -6.5011 24 1 6.5580 -5.1137 -6.3529 25 1 4.6373 -3.7883 -7.0114 26 1 6.8791 -2.9793 -7.4587 27 16 2.4827 -1.4038 -0.0078 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 4.0767 2.8946 0.5140 32 1 5.4332 1.7422 0.5139 33 1 3.9274 2.6447 -1.9815 34 1 6.6645 3.4604 -0.9044 35 1 5.9767 3.9518 -2.4711 36 1 5.2184 4.4969 -0.9561 37 1 6.5076 1.0622 -1.5874 38 1 4.9497 0.3902 -2.1256 39 1 5.8206 1.5535 -3.1539 40 1 4.0081 -3.3823 -0.7379 41 1 4.8469 -4.0849 0.6659 42 1 3.7189 -2.7266 0.8914 43 1 8.3561 -3.8542 1.0507 44 1 7.2725 -2.8322 2.0248 45 1 6.6577 -4.3318 1.2888 46 1 8.0645 -3.9255 -1.4773 47 1 6.4184 -4.5176 -1.1484 48 1 6.2220 -2.0060 -2.4249 49 1 5.3017 -1.1662 -5.5192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496105218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:35 Heat of formation + Delta-G solvation = -3.485288 kcal Electronic energy + Delta-G solvation = -29445.530461 eV Core-core repulsion = 25727.055507 eV Total energy + Delta-G solvation = -3718.474954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67157 -40.46908 -37.94139 -36.89336 -35.83975 -33.92553 -32.99266 -31.82931 -29.70140 -28.76733 -28.11148 -27.83323 -27.33285 -24.60086 -24.01201 -23.43936 -21.19775 -21.06696 -19.67822 -19.19758 -19.07379 -17.61987 -17.20467 -16.95113 -16.64293 -16.15295 -15.83066 -15.53473 -15.26858 -15.16219 -15.00146 -14.90247 -14.50787 -14.19378 -13.92914 -13.84457 -13.68279 -13.46495 -13.32594 -13.27245 -13.14995 -13.07889 -12.87088 -12.84052 -12.75428 -12.51762 -12.27774 -12.09330 -11.81698 -11.78623 -11.73128 -11.68946 -11.59129 -10.98106 -10.79554 -10.48982 -10.34067 -9.81673 -9.39516 -8.96141 -7.89388 -5.19259 -0.70184 0.26259 0.64569 1.44036 1.44617 1.45705 1.55190 1.93160 2.21227 2.55742 3.07324 3.42571 3.53320 3.86153 3.90287 3.94826 4.05072 4.06798 4.09893 4.23313 4.29598 4.33229 4.42837 4.53376 4.61108 4.66203 4.69472 4.72142 4.76601 4.79900 4.86954 4.89573 4.91237 4.96578 5.03519 5.07002 5.15109 5.16426 5.20074 5.31644 5.38720 5.45306 5.50102 5.52443 5.71833 6.27688 6.31564 6.70221 7.13839 7.35973 8.12583 8.35839 9.31651 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.004806 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.250427 B = 5824.839449 C = 6223.497431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.024 3.976 3 N -0.505 5.505 4 C 0.142 3.858 5 C -0.043 4.043 6 C -0.075 4.075 7 C -0.134 4.134 8 C -0.118 4.118 9 C -0.322 4.322 10 C 0.589 3.411 11 O -0.544 6.544 12 N -0.595 5.595 13 C 0.065 3.935 14 C 0.134 3.866 15 H 0.074 0.926 16 C -0.143 4.143 17 C 0.141 3.859 18 N -0.742 5.742 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.967 3.033 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.299 1.299 27 S 0.226 5.774 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.052 0.948 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.037 0.963 48 H 0.373 0.627 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 0.100 16.246 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.249 4.249 3 N -0.221 5.221 4 C 0.004 3.996 5 C -0.082 4.082 6 C -0.094 4.094 7 C -0.192 4.192 8 C -0.176 4.176 9 C -0.445 4.445 10 C 0.378 3.622 11 O -0.425 6.425 12 N -0.326 5.326 13 C -0.079 4.079 14 C 0.031 3.969 15 H 0.092 0.908 16 C -0.202 4.202 17 C 0.014 3.986 18 N -0.384 5.384 19 C -0.373 4.373 20 H 0.094 0.906 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.797 3.203 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.227 1.227 27 S 0.486 5.514 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.205 0.795 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.475 -0.291 16.121 18.216 hybrid contribution 0.502 0.724 -1.625 1.849 sum -7.973 0.433 14.496 16.550 Atomic orbital electron populations 1.20694 0.82268 1.05895 1.05038 1.28581 1.04204 0.93561 0.98563 1.66161 1.04062 1.33022 1.18859 1.20682 0.90532 0.93716 0.94688 1.20451 0.96306 0.93602 0.97871 1.20917 0.98252 0.95887 0.94359 1.21732 0.99370 0.96082 1.01983 1.21776 1.00640 0.97023 0.98138 1.25446 0.98550 0.98150 1.22370 1.16909 0.86549 0.82550 0.76227 1.90684 1.45473 1.54913 1.51400 1.47561 1.08859 1.05009 1.71214 1.22062 0.89008 0.94958 1.01882 1.21340 0.82000 0.97483 0.96065 0.90759 1.21993 1.03105 1.00235 0.94828 1.21236 0.97224 0.94316 0.85873 1.42514 1.76858 1.14897 1.04172 1.19598 1.34091 0.96973 0.86676 0.90567 1.25498 1.02721 0.97027 1.01158 1.69878 1.50086 1.11727 1.28955 0.85172 0.76573 0.78105 0.80477 1.18892 1.22284 1.22701 1.83957 0.93570 1.08380 1.65488 0.88539 0.87215 0.88520 0.89285 0.89048 0.92909 0.92511 0.92718 0.90769 0.91768 0.95950 0.95820 0.92926 0.86396 0.89893 0.89837 0.91820 0.90280 0.94990 0.94533 0.79526 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.46 71.23 0.75 -0.51 16 2 C 0.02 0.63 7.39 88.46 0.65 1.29 16 3 N -0.51 -16.15 10.50 -178.29 -1.87 -18.02 16 4 C 0.14 4.94 5.58 42.09 0.24 5.18 16 5 C -0.04 -1.41 4.82 29.85 0.14 -1.27 16 6 C -0.07 -2.61 2.91 -10.79 -0.03 -2.65 16 7 C -0.13 -3.82 9.19 71.98 0.66 -3.15 16 8 C -0.12 -5.20 7.61 71.98 0.55 -4.66 16 9 C -0.32 -11.21 5.26 23.88 0.13 -11.09 16 10 C 0.59 22.32 6.32 86.45 0.55 22.87 16 11 O -0.54 -22.95 10.13 -4.31 -0.04 -22.99 16 12 N -0.59 -19.75 2.24 -827.29 -1.86 -21.60 16 13 C 0.07 1.70 8.00 127.77 1.02 2.72 16 14 C 0.13 4.42 2.79 44.99 0.13 4.54 16 15 H 0.07 2.89 6.92 -2.39 -0.02 2.87 16 16 C -0.14 -3.19 9.19 71.98 0.66 -2.53 16 17 C 0.14 5.44 5.55 86.38 0.48 5.92 16 18 N -0.74 -37.98 5.43 -343.44 -1.87 -39.85 16 19 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 22 N -0.96 -59.54 13.06 21.65 0.28 -59.26 16 23 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 27 S 0.23 5.97 18.05 -56.49 -1.02 4.95 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 3.21 6.07 -2.38 -0.01 3.20 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.96 5.81 -2.39 -0.01 2.94 16 38 H 0.02 1.08 5.79 -2.39 -0.01 1.07 16 39 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.05 1.61 7.67 -2.39 -0.02 1.59 16 41 H 0.12 2.31 6.45 -2.39 -0.02 2.29 16 42 H 0.08 1.86 4.88 -19.16 -0.09 1.76 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.43 6.68 -2.39 -0.02 1.42 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.04 1.31 7.83 -2.39 -0.02 1.29 16 48 H 0.37 21.10 7.06 -92.71 -0.65 20.45 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -74.01 389.82 3.09 -70.92 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.22 Total: 36.64 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 7.22 Total: 0.38 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -5.31 Total: -138.73 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.02 Total: 4.95 kcal Total: -74.01 3.09 -70.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496105218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.436 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds