Wall clock time and date at job start Tue Mar 31 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30946 * 122.90594 * 2 1 4 4 C 1.29430 * 117.36946 * 179.97438 * 3 2 1 5 5 C 1.50695 * 124.80555 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47406 * 300.02785 * 5 4 3 7 7 C 1.53002 * 109.47003 * 60.03023 * 5 4 3 8 8 S 1.70959 * 110.38659 * 359.72890 * 4 3 2 9 9 C 1.35662 * 122.90644 * 180.02562 * 2 1 3 10 10 C 1.46680 * 126.13093 * 0.02562 * 9 2 1 11 11 O 1.21693 * 119.99704 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00113 * 179.97438 * 10 9 2 13 13 C 1.46505 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47159 * 64.99675 * 14 13 12 16 16 N 1.46498 * 109.47167 * 304.99505 * 14 13 12 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 14 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.52999 * 109.47264 * 184.99674 * 14 13 12 26 26 C 1.53000 * 109.47466 * 179.97438 * 25 14 13 27 27 C 1.52994 * 109.47057 * 299.99952 * 25 14 13 28 28 H 1.09006 * 109.46967 * 269.99744 * 1 2 3 29 29 H 1.08997 * 109.47282 * 29.99513 * 1 2 3 30 30 H 1.09003 * 109.47245 * 149.99566 * 1 2 3 31 31 H 1.09002 * 109.47163 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46847 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46633 * 300.00479 * 6 5 4 34 34 H 1.09002 * 109.46570 * 59.99849 * 6 5 4 35 35 H 1.09005 * 109.47187 * 59.99905 * 7 5 4 36 36 H 1.09002 * 109.46986 * 179.97438 * 7 5 4 37 37 H 1.08992 * 109.46882 * 299.99771 * 7 5 4 38 38 H 0.96994 * 120.00036 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47079 * 59.99484 * 13 12 10 40 40 H 1.09001 * 109.46574 * 299.99257 * 13 12 10 41 41 H 0.97004 * 119.99747 * 335.00715 * 16 14 13 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 43 43 H 1.09005 * 109.47033 * 59.99923 * 25 14 13 44 44 H 1.09005 * 109.46643 * 60.00192 * 26 25 14 45 45 H 1.08994 * 109.47045 * 179.97438 * 26 25 14 46 46 H 1.08994 * 109.47364 * 300.00334 * 26 25 14 47 47 H 1.09003 * 109.47639 * 59.99882 * 27 25 14 48 48 H 1.09004 * 109.47252 * 179.97438 * 27 25 14 49 49 H 1.08999 * 109.47272 * 299.99426 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 0.0005 5 6 4.4821 2.1231 0.0000 6 6 4.2625 2.9783 -1.2495 7 6 4.2626 2.9791 1.2490 8 16 3.9447 -0.6780 0.0087 9 6 2.2440 -1.1390 -0.0005 10 6 1.7192 -2.5087 -0.0017 11 8 0.5174 -2.6998 -0.0018 12 7 2.5680 -3.5555 -0.0026 13 6 2.0438 -4.9236 -0.0032 14 6 3.2084 -5.9159 -0.0035 15 1 3.7666 -5.8213 0.9279 16 7 4.0938 -5.6293 -1.1349 17 6 5.4120 -5.9966 -1.0829 18 1 5.7988 -6.4981 -0.2080 19 6 6.2511 -5.7245 -2.1546 20 7 5.7785 -5.1183 -3.2231 21 14 8.0491 -6.2263 -2.0841 22 1 8.7233 -5.8312 -3.3469 23 1 8.7075 -5.5485 -0.9384 24 1 8.1458 -7.6979 -1.9107 25 6 2.6646 -7.3404 -0.1298 26 6 3.8291 -8.3328 -0.1308 27 6 1.7398 -7.6398 1.0517 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 5.5006 1.7348 0.0002 32 1 4.9679 3.8093 -1.2495 33 1 4.4189 2.3683 -2.1392 34 1 3.2440 3.3666 -1.2495 35 1 4.4191 2.3698 2.1393 36 1 4.9685 3.8097 1.2489 37 1 3.2442 3.3674 1.2489 38 1 3.5259 -3.4032 -0.0029 39 1 1.4336 -5.0785 -0.8929 40 1 1.4345 -5.0795 0.8871 41 1 3.7464 -5.1791 -1.9207 42 1 4.8448 -4.8580 -3.2600 43 1 2.1063 -7.4350 -1.0612 44 1 4.3877 -8.2383 0.8005 45 1 3.4416 -9.3476 -0.2203 46 1 4.4876 -8.1193 -0.9727 47 1 0.9101 -6.9329 1.0521 48 1 1.3520 -8.6546 0.9616 49 1 2.2981 -7.5453 1.9831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496641443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:39 Heat of formation + Delta-G solvation = -8.266956 kcal Electronic energy + Delta-G solvation = -27707.207894 eV Core-core repulsion = 23988.525592 eV Total energy + Delta-G solvation = -3718.682302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38685 -39.17295 -37.37143 -35.73043 -34.04582 -33.47480 -31.22610 -30.39277 -28.93116 -27.41471 -27.35778 -26.05045 -25.34926 -23.71959 -22.46208 -21.34318 -20.91387 -19.75532 -18.94841 -17.87927 -17.50039 -16.64230 -15.88304 -15.56253 -15.28420 -14.95295 -14.67719 -14.38934 -14.15613 -13.78839 -13.69025 -13.56622 -13.49899 -13.38479 -13.02908 -12.53530 -12.51073 -12.29509 -12.21181 -12.00657 -11.85458 -11.69201 -11.42962 -11.35882 -11.26300 -11.21639 -10.97025 -10.82792 -10.45295 -10.19546 -10.11445 -9.94985 -9.91677 -9.61081 -9.49018 -9.25188 -8.97033 -8.88205 -8.65403 -7.14282 -6.16170 -3.18297 0.25040 1.17582 1.59664 2.44598 3.26952 3.36053 3.46345 3.48690 3.66382 3.83713 4.53506 4.59015 4.72178 4.80273 4.94081 5.12073 5.18440 5.22684 5.27997 5.40055 5.46028 5.50889 5.54677 5.58827 5.65148 5.68143 5.68704 5.76636 5.79168 5.84414 5.88283 5.97316 6.03714 6.06072 6.13278 6.26590 6.31383 6.35756 6.44073 6.52449 6.56226 6.77610 6.96502 7.23544 7.56765 7.72412 7.74249 8.31751 8.67216 9.11487 9.98477 10.13226 11.30527 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003674 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.294962 B = 7618.636031 C = 9787.980285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 N -0.475 5.475 4 C 0.061 3.939 5 C -0.020 4.020 6 C -0.140 4.140 7 C -0.139 4.139 8 S 0.182 5.818 9 C -0.300 4.300 10 C 0.593 3.407 11 O -0.536 6.536 12 N -0.708 5.708 13 C 0.113 3.887 14 C 0.175 3.825 15 H 0.055 0.945 16 N -0.733 5.733 17 C -0.329 4.329 18 H 0.068 0.932 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.074 2.926 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.295 1.295 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.149 4.149 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.407 0.593 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.367 0.633 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 11.513 8.851 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 N -0.190 5.190 4 C -0.215 4.215 5 C -0.042 4.042 6 C -0.199 4.199 7 C -0.198 4.198 8 S 0.442 5.558 9 C -0.424 4.424 10 C 0.379 3.621 11 O -0.416 6.416 12 N -0.359 5.359 13 C -0.011 4.011 14 C 0.065 3.935 15 H 0.073 0.927 16 N -0.376 5.376 17 C -0.460 4.460 18 H 0.086 0.914 19 C -0.239 4.239 20 N -0.585 5.585 21 Si 0.905 3.095 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.222 1.222 25 C -0.130 4.130 26 C -0.195 4.195 27 C -0.207 4.207 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.247 11.202 8.196 14.255 hybrid contribution -1.911 -0.030 0.604 2.005 sum -5.158 11.172 8.800 15.128 Atomic orbital electron populations 1.20621 0.86158 1.04322 1.03423 1.20613 0.98491 0.84922 0.95380 1.65977 1.04291 1.31224 1.17504 1.27421 0.94489 0.98582 1.00966 1.19916 0.95173 0.91081 0.97995 1.21808 1.03007 0.99249 0.95827 1.21803 1.03044 0.99221 0.95710 1.84353 1.05021 1.01426 1.65035 1.25522 0.96341 0.99246 1.21276 1.16683 0.86137 0.82510 0.76798 1.90743 1.14283 1.85137 1.51434 1.45923 1.10359 1.05957 1.73658 1.21830 0.97286 0.80166 1.01857 1.20493 0.89440 0.90797 0.92811 0.92719 1.42478 1.07416 1.71243 1.16422 1.19980 0.86006 1.36180 1.03810 0.91441 1.25683 1.05149 0.99970 0.93090 1.70889 1.16010 1.42393 1.29183 0.83318 0.75032 0.75576 0.75555 1.21115 1.22280 1.22249 1.21708 0.96395 0.97425 0.97470 1.21809 0.98391 0.96130 1.03210 1.21942 0.99311 1.00677 0.98783 0.90396 0.91013 0.88199 0.88960 0.91486 0.92266 0.91416 0.92485 0.91495 0.91402 0.75640 0.91643 0.91113 0.79902 0.93350 0.92027 0.94034 0.94963 0.89444 0.93040 0.93422 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.70 36.00 0.35 -0.79 16 2 C 0.14 2.17 6.79 -83.89 -0.57 1.60 16 3 N -0.48 -6.72 10.48 -7.70 -0.08 -6.80 16 4 C 0.06 0.77 5.90 -13.29 -0.08 0.69 16 5 C -0.02 -0.19 3.35 -91.77 -0.31 -0.49 16 6 C -0.14 -1.24 9.17 37.16 0.34 -0.89 16 7 C -0.14 -1.14 9.17 37.16 0.34 -0.80 16 8 S 0.18 2.53 22.29 -107.50 -2.40 0.14 16 9 C -0.30 -4.77 6.48 -37.10 -0.24 -5.01 16 10 C 0.59 10.39 7.78 -12.85 -0.10 10.29 16 11 O -0.54 -10.16 14.27 5.20 0.07 -10.08 16 12 N -0.71 -12.23 5.38 -61.62 -0.33 -12.56 16 13 C 0.11 1.91 4.73 -4.04 -0.02 1.89 16 14 C 0.17 3.21 2.18 -67.93 -0.15 3.06 16 15 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 16 N -0.73 -16.39 4.44 -53.43 -0.24 -16.63 16 17 C -0.33 -8.26 7.57 -15.06 -0.11 -8.38 16 18 H 0.07 1.68 7.39 -52.48 -0.39 1.30 16 19 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 20 N -0.94 -27.36 13.70 55.49 0.76 -26.60 16 21 Si 1.07 24.51 29.92 -169.99 -5.09 19.43 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.30 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.11 -1.83 2.69 -90.62 -0.24 -2.08 16 26 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 27 C -0.15 -2.08 8.84 37.15 0.33 -1.75 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.46 6.01 -51.93 -0.31 1.15 16 31 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.41 7.25 7.32 -40.82 -0.30 6.95 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.12 6.71 -51.93 -0.35 0.77 16 41 H 0.37 8.83 6.63 -40.82 -0.27 8.56 16 42 H 0.26 7.39 6.77 -40.82 -0.28 7.11 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.88 6.01 -51.93 -0.31 1.56 16 47 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -29.43 403.49 -9.57 -39.00 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -8.10 Total: 14.05 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.25 Total: -6.03 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.11 Total: -62.58 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.43 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.40 Total: 0.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.43 -9.57 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.734 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds