Wall clock time and date at job start Tue Mar 31 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30946 * 122.90594 * 2 1 4 4 C 1.29430 * 117.36946 * 179.97438 * 3 2 1 5 5 C 1.50695 * 124.80555 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47406 * 300.02785 * 5 4 3 7 7 C 1.53002 * 109.47003 * 60.03023 * 5 4 3 8 8 S 1.70959 * 110.38659 * 359.72890 * 4 3 2 9 9 C 1.35662 * 122.90644 * 180.02562 * 2 1 3 10 10 C 1.46680 * 126.13093 * 0.02562 * 9 2 1 11 11 O 1.21693 * 119.99704 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00113 * 179.97438 * 10 9 2 13 13 C 1.46505 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47159 * 64.99675 * 14 13 12 16 16 N 1.46498 * 109.47167 * 304.99505 * 14 13 12 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 14 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.52999 * 109.47264 * 184.99674 * 14 13 12 26 26 C 1.53000 * 109.47466 * 179.97438 * 25 14 13 27 27 C 1.52994 * 109.47057 * 299.99952 * 25 14 13 28 28 H 1.09006 * 109.46967 * 269.99744 * 1 2 3 29 29 H 1.08997 * 109.47282 * 29.99513 * 1 2 3 30 30 H 1.09003 * 109.47245 * 149.99566 * 1 2 3 31 31 H 1.09002 * 109.47163 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46847 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46633 * 300.00479 * 6 5 4 34 34 H 1.09002 * 109.46570 * 59.99849 * 6 5 4 35 35 H 1.09005 * 109.47187 * 59.99905 * 7 5 4 36 36 H 1.09002 * 109.46986 * 179.97438 * 7 5 4 37 37 H 1.08992 * 109.46882 * 299.99771 * 7 5 4 38 38 H 0.96994 * 120.00036 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47079 * 59.99484 * 13 12 10 40 40 H 1.09001 * 109.46574 * 299.99257 * 13 12 10 41 41 H 0.97004 * 119.99747 * 335.00715 * 16 14 13 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 43 43 H 1.09005 * 109.47033 * 59.99923 * 25 14 13 44 44 H 1.09005 * 109.46643 * 60.00192 * 26 25 14 45 45 H 1.08994 * 109.47045 * 179.97438 * 26 25 14 46 46 H 1.08994 * 109.47364 * 300.00334 * 26 25 14 47 47 H 1.09003 * 109.47639 * 59.99882 * 27 25 14 48 48 H 1.09004 * 109.47252 * 179.97438 * 27 25 14 49 49 H 1.08999 * 109.47272 * 299.99426 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 0.0005 5 6 4.4821 2.1231 0.0000 6 6 4.2625 2.9783 -1.2495 7 6 4.2626 2.9791 1.2490 8 16 3.9447 -0.6780 0.0087 9 6 2.2440 -1.1390 -0.0005 10 6 1.7192 -2.5087 -0.0017 11 8 0.5174 -2.6998 -0.0018 12 7 2.5680 -3.5555 -0.0026 13 6 2.0438 -4.9236 -0.0032 14 6 3.2084 -5.9159 -0.0035 15 1 3.7666 -5.8213 0.9279 16 7 4.0938 -5.6293 -1.1349 17 6 5.4120 -5.9966 -1.0829 18 1 5.7988 -6.4981 -0.2080 19 6 6.2511 -5.7245 -2.1546 20 7 5.7785 -5.1183 -3.2231 21 14 8.0491 -6.2263 -2.0841 22 1 8.7233 -5.8312 -3.3469 23 1 8.7075 -5.5485 -0.9384 24 1 8.1458 -7.6979 -1.9107 25 6 2.6646 -7.3404 -0.1298 26 6 3.8291 -8.3328 -0.1308 27 6 1.7398 -7.6398 1.0517 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 5.5006 1.7348 0.0002 32 1 4.9679 3.8093 -1.2495 33 1 4.4189 2.3683 -2.1392 34 1 3.2440 3.3666 -1.2495 35 1 4.4191 2.3698 2.1393 36 1 4.9685 3.8097 1.2489 37 1 3.2442 3.3674 1.2489 38 1 3.5259 -3.4032 -0.0029 39 1 1.4336 -5.0785 -0.8929 40 1 1.4345 -5.0795 0.8871 41 1 3.7464 -5.1791 -1.9207 42 1 4.8448 -4.8580 -3.2600 43 1 2.1063 -7.4350 -1.0612 44 1 4.3877 -8.2383 0.8005 45 1 3.4416 -9.3476 -0.2203 46 1 4.4876 -8.1193 -0.9727 47 1 0.9101 -6.9329 1.0521 48 1 1.3520 -8.6546 0.9616 49 1 2.2981 -7.5453 1.9831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496641443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:38 Heat of formation + Delta-G solvation = -25.952562 kcal Electronic energy + Delta-G solvation = -27707.974800 eV Core-core repulsion = 23988.525592 eV Total energy + Delta-G solvation = -3719.449208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57045 -40.48058 -38.88039 -36.58209 -35.53875 -35.20673 -32.34613 -32.03710 -30.34401 -28.71289 -28.08382 -27.40976 -26.32204 -25.54285 -23.96658 -22.55800 -22.01052 -21.10593 -20.28002 -19.38313 -18.98423 -17.93073 -17.11277 -16.88466 -16.55507 -16.28671 -16.13356 -15.64193 -15.49741 -15.32035 -14.98187 -14.95806 -14.59376 -14.50139 -14.18419 -13.68779 -13.62862 -13.54357 -13.36506 -12.95423 -12.92105 -12.84886 -12.67748 -12.66076 -12.50740 -12.42037 -12.16071 -12.01330 -11.96486 -11.91800 -11.59174 -11.51579 -11.22892 -11.17442 -10.84494 -10.75431 -10.65839 -10.22399 -9.82634 -9.06968 -8.26750 -5.22646 -0.88668 0.06811 0.47971 1.27690 1.61831 1.69686 1.85333 1.95409 2.03713 2.74753 2.84489 3.47931 3.62793 3.64588 3.70646 3.78746 3.94682 4.01096 4.08044 4.19750 4.20473 4.33427 4.37756 4.54420 4.62359 4.63377 4.66924 4.77806 4.79435 4.84086 4.88595 4.89155 4.91205 4.95826 5.05561 5.07632 5.14893 5.19156 5.25300 5.30648 5.36264 5.40067 5.55017 5.68911 5.72966 6.27065 6.49869 6.57391 6.93531 7.13615 8.03490 8.16575 9.23161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003674 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.294962 B = 7618.636031 C = 9787.980285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.146 3.854 3 N -0.486 5.486 4 C 0.079 3.921 5 C -0.025 4.025 6 C -0.137 4.137 7 C -0.134 4.134 8 S 0.174 5.826 9 C -0.331 4.331 10 C 0.593 3.407 11 O -0.556 6.556 12 N -0.710 5.710 13 C 0.121 3.879 14 C 0.177 3.823 15 H 0.054 0.946 16 N -0.740 5.740 17 C -0.306 4.306 18 H 0.071 0.929 19 C -0.100 4.100 20 N -0.977 5.977 21 Si 1.116 2.884 22 H -0.300 1.300 23 H -0.277 1.277 24 H -0.283 1.283 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.141 4.141 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.404 0.596 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.357 0.643 42 H 0.242 0.758 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 12.174 10.617 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.007 3.993 3 N -0.201 5.201 4 C -0.197 4.197 5 C -0.047 4.047 6 C -0.196 4.196 7 C -0.193 4.193 8 S 0.435 5.565 9 C -0.455 4.455 10 C 0.380 3.620 11 O -0.437 6.437 12 N -0.360 5.360 13 C -0.003 4.003 14 C 0.069 3.931 15 H 0.072 0.928 16 N -0.381 5.381 17 C -0.437 4.437 18 H 0.089 0.911 19 C -0.291 4.291 20 N -0.626 5.626 21 Si 0.943 3.057 22 H -0.227 1.227 23 H -0.203 1.203 24 H -0.209 1.209 25 C -0.126 4.126 26 C -0.190 4.190 27 C -0.199 4.199 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.240 0.760 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.189 0.811 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.938 11.835 10.019 15.782 hybrid contribution -2.056 -0.188 0.113 2.068 sum -4.994 11.648 10.131 16.225 Atomic orbital electron populations 1.20617 0.85199 1.04280 1.04079 1.20957 0.99372 0.84941 0.94036 1.66066 1.04778 1.30630 1.18635 1.28142 0.94654 0.98740 0.98135 1.20223 0.94993 0.90287 0.99171 1.21807 1.03282 0.99691 0.94810 1.21793 1.03242 0.99629 0.94642 1.84333 1.04118 1.02597 1.65474 1.25404 0.97500 0.98686 1.23931 1.16873 0.85878 0.83101 0.76182 1.90721 1.14934 1.85612 1.52470 1.45924 1.10148 1.06127 1.73788 1.21750 0.96592 0.79767 1.02166 1.20627 0.89281 0.92157 0.91079 0.92815 1.42594 1.07268 1.71140 1.17139 1.20199 0.86943 1.33510 1.03037 0.91108 1.26809 1.08416 1.00752 0.93158 1.70997 1.15340 1.45479 1.30795 0.82756 0.71559 0.76065 0.75354 1.22699 1.20321 1.20917 1.21605 0.96572 0.95832 0.98621 1.21714 0.98108 0.97591 1.01622 1.21854 0.98803 1.01886 0.97317 0.89290 0.89386 0.89766 0.87375 0.88825 0.93298 0.92285 0.92669 0.88918 0.92341 0.76016 0.92661 0.89335 0.81089 0.94772 0.93152 0.93551 0.92920 0.93324 0.92181 0.91859 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 9.70 71.23 0.69 -1.47 16 2 C 0.15 4.37 6.79 42.09 0.29 4.65 16 3 N -0.49 -13.37 10.48 -178.29 -1.87 -15.24 16 4 C 0.08 1.92 5.90 88.46 0.52 2.44 16 5 C -0.02 -0.42 3.35 -11.54 -0.04 -0.46 16 6 C -0.14 -2.15 9.17 71.98 0.66 -1.49 16 7 C -0.13 -1.88 9.17 71.98 0.66 -1.22 16 8 S 0.17 4.85 22.29 -56.49 -1.26 3.59 16 9 C -0.33 -10.66 6.48 23.88 0.15 -10.51 16 10 C 0.59 21.06 7.78 86.45 0.67 21.74 16 11 O -0.56 -21.30 14.27 -4.33 -0.06 -21.37 16 12 N -0.71 -24.80 5.38 -467.08 -2.51 -27.32 16 13 C 0.12 4.07 4.73 86.38 0.41 4.48 16 14 C 0.18 6.42 2.18 44.99 0.10 6.52 16 15 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 16 N -0.74 -33.58 4.44 -322.94 -1.43 -35.01 16 17 C -0.31 -15.42 7.57 84.03 0.64 -14.78 16 18 H 0.07 3.49 7.39 -2.91 -0.02 3.47 16 19 C -0.10 -5.41 5.50 84.86 0.47 -4.95 16 20 N -0.98 -58.46 13.70 21.65 0.30 -58.16 16 21 Si 1.12 49.64 29.92 68.60 2.05 51.69 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.10 -3.43 2.69 -10.80 -0.03 -3.45 16 26 C -0.13 -4.62 8.26 71.98 0.59 -4.03 16 27 C -0.14 -3.55 8.84 71.98 0.64 -2.91 16 28 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.49 6.01 -2.39 -0.01 2.48 16 31 H 0.11 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.40 14.66 7.32 -92.71 -0.68 13.98 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 2.68 6.71 -2.39 -0.02 2.66 16 41 H 0.36 17.75 6.63 -92.71 -0.61 17.13 16 42 H 0.24 14.57 6.77 -92.71 -0.63 13.94 16 43 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.05 2.07 6.01 -2.39 -0.01 2.05 16 47 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.23 403.49 1.44 -62.79 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.19 Total: 44.46 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.42 Total: -5.43 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -5.52 Total: -135.73 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.26 Total: 3.59 kcal Total: -64.23 1.44 -62.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds