Wall clock time and date at job start Tue Mar 31 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30936 * 122.90300 * 2 1 4 4 C 1.29428 * 117.36456 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.80616 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46995 * 60.02767 * 5 4 3 7 7 C 1.53008 * 109.47375 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.47499 * 300.02888 * 5 4 3 9 9 S 1.70951 * 110.39051 * 359.72991 * 4 3 2 10 10 C 1.35660 * 122.90497 * 180.02562 * 2 1 3 11 11 C 1.46679 * 126.13039 * 359.96072 * 10 2 1 12 12 O 1.21686 * 120.00396 * 359.97438 * 11 10 2 13 13 N 1.34777 * 120.00006 * 180.02562 * 11 10 2 14 14 C 1.46503 * 120.00050 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46796 * 35.00181 * 14 13 11 16 16 C 1.53001 * 109.47195 * 275.00038 * 14 13 11 17 17 C 1.53004 * 109.47080 * 154.99918 * 14 13 11 18 18 N 1.46496 * 109.46973 * 305.00016 * 17 14 13 19 19 C 1.46507 * 120.00313 * 270.00237 * 18 17 14 20 20 C 1.36936 * 119.99932 * 90.00209 * 18 17 14 21 21 H 1.07996 * 120.00341 * 22.28473 * 20 18 17 22 22 C 1.38816 * 119.99893 * 202.28566 * 20 18 17 23 23 N 1.31612 * 120.00159 * 11.47453 * 22 20 18 24 24 Si 1.86797 * 119.99869 * 191.47465 * 22 20 18 25 25 H 1.48504 * 109.47267 * 59.99983 * 24 22 20 26 26 H 1.48500 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47247 * 300.00003 * 24 22 20 28 28 H 1.09003 * 109.47266 * 269.95306 * 1 2 3 29 29 H 1.08997 * 109.47335 * 29.95485 * 1 2 3 30 30 H 1.09002 * 109.47331 * 149.95814 * 1 2 3 31 31 H 1.09002 * 109.47159 * 60.00360 * 6 5 4 32 32 H 1.09006 * 109.47428 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47272 * 300.00178 * 6 5 4 34 34 H 1.08997 * 109.46945 * 60.00002 * 7 5 4 35 35 H 1.09000 * 109.46799 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46915 * 300.00245 * 7 5 4 37 37 H 1.09000 * 109.46812 * 59.99795 * 8 5 4 38 38 H 1.09000 * 109.47215 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.46848 * 300.00014 * 8 5 4 40 40 H 0.96994 * 120.00372 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.46862 * 299.99807 * 16 14 13 42 42 H 1.08994 * 109.47300 * 60.00200 * 16 14 13 43 43 H 1.09005 * 109.46686 * 180.02562 * 16 14 13 44 44 H 1.08991 * 109.47086 * 64.99953 * 17 14 13 45 45 H 1.09000 * 109.47094 * 185.00516 * 17 14 13 46 46 H 1.08990 * 109.47341 * 94.22251 * 19 18 17 47 47 H 1.08999 * 109.46907 * 214.22952 * 19 18 17 48 48 H 1.09000 * 109.46487 * 334.21894 * 19 18 17 49 49 H 0.97003 * 120.00272 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 -0.0005 5 6 4.4821 2.1230 0.0000 6 6 4.2634 2.9773 1.2502 7 6 5.9118 1.5779 -0.0015 8 6 4.2617 2.9800 -1.2483 9 16 3.9447 -0.6780 0.0065 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0003 12 8 0.5174 -2.6998 0.0008 13 7 2.5680 -3.5555 -0.0004 14 6 2.0438 -4.9236 0.0004 15 1 1.1275 -4.9619 -0.5886 16 6 1.7447 -5.3543 1.4377 17 6 3.0819 -5.8678 -0.6094 18 7 3.4568 -5.3866 -1.9414 19 6 2.7130 -5.8388 -3.1198 20 6 4.5024 -4.5142 -2.0849 21 1 5.2637 -4.4534 -1.3213 22 6 4.5839 -3.7079 -3.2120 23 7 3.5560 -3.6122 -4.0283 24 14 6.1525 -2.7589 -3.5699 25 1 7.2818 -3.7103 -3.7271 26 1 5.9841 -1.9786 -4.8221 27 1 6.4384 -1.8328 -2.4449 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 4.4205 2.3669 2.1395 32 1 4.9694 3.8079 1.2508 33 1 3.2449 3.3657 1.2513 34 1 6.0676 0.9692 -0.8922 35 1 6.6173 2.4087 -0.0007 36 1 6.0688 0.9674 0.8877 37 1 3.2432 3.3683 -1.2471 38 1 4.9677 3.8104 -1.2481 39 1 4.4175 2.3713 -2.1389 40 1 3.5259 -3.4033 -0.0009 41 1 2.6610 -5.3161 2.0266 42 1 1.0052 -4.6818 1.8722 43 1 1.3551 -6.3724 1.4382 44 1 3.9653 -5.8972 0.0282 45 1 2.6589 -6.8691 -0.6907 46 1 1.9284 -5.1190 -3.3525 47 1 3.3924 -5.9228 -3.9680 48 1 2.2651 -6.8113 -2.9156 49 1 3.6128 -3.0485 -4.8157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498465204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:31 Heat of formation + Delta-G solvation = 11.618404 kcal Electronic energy + Delta-G solvation = -28948.232156 eV Core-core repulsion = 25230.412148 eV Total energy + Delta-G solvation = -3717.820008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.10115 -38.90890 -36.87226 -36.17762 -34.00557 -31.54957 -31.03688 -30.18228 -27.66242 -27.54828 -27.37718 -26.18481 -25.62906 -24.82123 -22.41578 -21.21515 -20.02360 -19.83346 -18.89033 -17.46748 -16.81386 -16.26582 -15.60157 -15.22850 -14.99672 -14.78442 -14.31575 -14.08321 -13.86957 -13.68925 -13.50974 -13.23117 -13.05114 -12.87378 -12.55306 -12.46335 -12.25146 -12.21057 -12.03480 -11.89975 -11.79430 -11.52312 -11.42069 -11.29692 -11.12972 -11.10091 -10.91643 -10.86000 -10.74086 -10.42902 -10.27207 -10.10212 -9.86239 -9.59229 -9.23200 -9.11398 -8.59998 -8.49856 -8.24714 -6.81079 -5.77109 -3.23263 0.59334 1.49652 1.94351 2.77987 3.29081 3.36778 3.38211 3.65409 3.86660 4.02477 4.42789 4.63519 4.77244 4.88048 5.22824 5.30338 5.32721 5.42249 5.44746 5.49783 5.51391 5.62148 5.65716 5.72908 5.75664 5.80995 5.86996 5.92094 5.94600 5.96519 6.06787 6.13719 6.14215 6.17195 6.20623 6.22860 6.42127 6.49868 6.63910 6.73415 6.86348 7.21381 7.36560 7.67043 7.77683 7.88748 8.20287 8.33351 8.82152 9.17287 9.81231 10.31311 11.26949 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.005303 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.981299 B = 5279.231344 C = 6907.739893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.132 3.868 3 N -0.475 5.475 4 C 0.053 3.947 5 C 0.010 3.990 6 C -0.132 4.132 7 C -0.158 4.158 8 C -0.135 4.135 9 S 0.185 5.815 10 C -0.283 4.283 11 C 0.598 3.402 12 O -0.545 6.545 13 N -0.680 5.680 14 C 0.118 3.882 15 H 0.079 0.921 16 C -0.160 4.160 17 C 0.141 3.859 18 N -0.598 5.598 19 C 0.164 3.836 20 C -0.260 4.260 21 H 0.065 0.935 22 C 0.012 3.988 23 N -0.897 5.897 24 Si 0.887 3.113 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.401 0.599 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.044 0.956 48 H -0.004 1.004 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 8.321 10.402 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 N -0.190 5.190 4 C -0.222 4.222 5 C 0.007 3.993 6 C -0.190 4.190 7 C -0.216 4.216 8 C -0.193 4.193 9 S 0.445 5.555 10 C -0.407 4.407 11 C 0.383 3.617 12 O -0.426 6.426 13 N -0.329 5.329 14 C 0.011 3.989 15 H 0.098 0.902 16 C -0.219 4.219 17 C 0.013 3.987 18 N -0.320 5.320 19 C 0.020 3.980 20 C -0.389 4.389 21 H 0.082 0.918 22 C -0.188 4.188 23 N -0.540 5.540 24 Si 0.717 3.283 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.237 0.763 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.014 0.986 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.867 8.176 10.202 13.206 hybrid contribution 0.409 0.695 -0.512 0.955 sum 2.276 8.871 9.690 13.333 Atomic orbital electron populations 1.20573 0.86405 1.04216 1.03012 1.20527 0.98356 0.85021 0.96655 1.65904 1.04300 1.31432 1.17339 1.27303 0.94339 0.98300 1.02301 1.19240 0.91336 0.90734 0.98023 1.21824 1.02792 0.98945 0.95477 1.22068 0.94451 1.01941 1.03158 1.21844 1.02765 0.98979 0.95758 1.84116 1.05444 1.01060 1.64863 1.25634 0.96336 0.99546 1.19172 1.16577 0.86144 0.82454 0.76495 1.90693 1.14489 1.85063 1.52307 1.45631 1.09662 1.05363 1.72234 1.21896 0.99931 0.81994 0.95115 0.90240 1.22162 1.01195 1.01062 0.97465 1.21199 0.95044 0.94580 0.87879 1.43884 1.36155 1.52189 0.99811 1.20795 0.95584 0.92675 0.88967 1.18996 0.99375 1.14611 1.05955 0.91756 1.24959 0.96816 0.97958 0.99057 1.70048 1.28154 1.40762 1.15084 0.86599 0.83688 0.80131 0.77925 1.20993 1.21584 1.20256 0.90792 0.91357 0.88161 0.92538 0.91697 0.91442 0.91480 0.90634 0.91711 0.91403 0.91676 0.92298 0.76294 0.93025 0.92844 0.92079 0.93361 0.92764 0.95403 0.93683 0.98552 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.69 36.01 0.35 -1.01 16 2 C 0.13 2.42 6.79 -83.90 -0.57 1.85 16 3 N -0.48 -8.10 10.48 -7.71 -0.08 -8.18 16 4 C 0.05 0.82 5.78 -13.29 -0.08 0.75 16 5 C 0.01 0.13 0.99 -155.66 -0.15 -0.03 16 6 C -0.13 -1.32 8.45 37.16 0.31 -1.01 16 7 C -0.16 -1.70 7.53 37.16 0.28 -1.42 16 8 C -0.13 -1.54 8.45 37.16 0.31 -1.22 16 9 S 0.19 3.13 20.68 -107.50 -2.22 0.91 16 10 C -0.28 -5.47 6.48 -37.10 -0.24 -5.71 16 11 C 0.60 12.56 7.74 -12.85 -0.10 12.46 16 12 O -0.54 -12.24 13.93 5.20 0.07 -12.17 16 13 N -0.68 -13.61 4.48 -55.11 -0.25 -13.86 16 14 C 0.12 2.22 2.88 -67.93 -0.20 2.03 16 15 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 16 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 17 C 0.14 2.71 5.36 -4.04 -0.02 2.68 16 18 N -0.60 -14.15 2.82 -181.12 -0.51 -14.66 16 19 C 0.16 3.99 9.01 59.85 0.54 4.53 16 20 C -0.26 -6.54 8.02 -15.06 -0.12 -6.66 16 21 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 22 C 0.01 0.31 5.13 -17.43 -0.09 0.22 16 23 N -0.90 -25.36 10.59 55.49 0.59 -24.77 16 24 Si 0.89 20.67 29.57 -169.99 -5.03 15.65 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.83 6.01 -51.93 -0.31 1.52 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 8.01 6.58 -40.82 -0.27 7.74 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 45 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 46 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 47 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 48 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -30.11 403.87 -9.17 -39.28 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.41 Total: 6.33 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.58 Total: 5.38 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.25 Total: -61.46 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.22 Total: 0.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.11 -9.17 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498465204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.900 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds