Wall clock time and date at job start Tue Mar 31 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30936 * 122.90300 * 2 1 4 4 C 1.29428 * 117.36456 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.80616 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46995 * 60.02767 * 5 4 3 7 7 C 1.53008 * 109.47375 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.47499 * 300.02888 * 5 4 3 9 9 S 1.70951 * 110.39051 * 359.72991 * 4 3 2 10 10 C 1.35660 * 122.90497 * 180.02562 * 2 1 3 11 11 C 1.46679 * 126.13039 * 359.96072 * 10 2 1 12 12 O 1.21686 * 120.00396 * 359.97438 * 11 10 2 13 13 N 1.34777 * 120.00006 * 180.02562 * 11 10 2 14 14 C 1.46503 * 120.00050 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46796 * 35.00181 * 14 13 11 16 16 C 1.53001 * 109.47195 * 275.00038 * 14 13 11 17 17 C 1.53004 * 109.47080 * 154.99918 * 14 13 11 18 18 N 1.46496 * 109.46973 * 305.00016 * 17 14 13 19 19 C 1.46507 * 120.00313 * 270.00237 * 18 17 14 20 20 C 1.36936 * 119.99932 * 90.00209 * 18 17 14 21 21 H 1.07996 * 120.00341 * 22.28473 * 20 18 17 22 22 C 1.38816 * 119.99893 * 202.28566 * 20 18 17 23 23 N 1.31612 * 120.00159 * 11.47453 * 22 20 18 24 24 Si 1.86797 * 119.99869 * 191.47465 * 22 20 18 25 25 H 1.48504 * 109.47267 * 59.99983 * 24 22 20 26 26 H 1.48500 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47247 * 300.00003 * 24 22 20 28 28 H 1.09003 * 109.47266 * 269.95306 * 1 2 3 29 29 H 1.08997 * 109.47335 * 29.95485 * 1 2 3 30 30 H 1.09002 * 109.47331 * 149.95814 * 1 2 3 31 31 H 1.09002 * 109.47159 * 60.00360 * 6 5 4 32 32 H 1.09006 * 109.47428 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47272 * 300.00178 * 6 5 4 34 34 H 1.08997 * 109.46945 * 60.00002 * 7 5 4 35 35 H 1.09000 * 109.46799 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46915 * 300.00245 * 7 5 4 37 37 H 1.09000 * 109.46812 * 59.99795 * 8 5 4 38 38 H 1.09000 * 109.47215 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.46848 * 300.00014 * 8 5 4 40 40 H 0.96994 * 120.00372 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.46862 * 299.99807 * 16 14 13 42 42 H 1.08994 * 109.47300 * 60.00200 * 16 14 13 43 43 H 1.09005 * 109.46686 * 180.02562 * 16 14 13 44 44 H 1.08991 * 109.47086 * 64.99953 * 17 14 13 45 45 H 1.09000 * 109.47094 * 185.00516 * 17 14 13 46 46 H 1.08990 * 109.47341 * 94.22251 * 19 18 17 47 47 H 1.08999 * 109.46907 * 214.22952 * 19 18 17 48 48 H 1.09000 * 109.46487 * 334.21894 * 19 18 17 49 49 H 0.97003 * 120.00272 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 -0.0005 5 6 4.4821 2.1230 0.0000 6 6 4.2634 2.9773 1.2502 7 6 5.9118 1.5779 -0.0015 8 6 4.2617 2.9800 -1.2483 9 16 3.9447 -0.6780 0.0065 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0003 12 8 0.5174 -2.6998 0.0008 13 7 2.5680 -3.5555 -0.0004 14 6 2.0438 -4.9236 0.0004 15 1 1.1275 -4.9619 -0.5886 16 6 1.7447 -5.3543 1.4377 17 6 3.0819 -5.8678 -0.6094 18 7 3.4568 -5.3866 -1.9414 19 6 2.7130 -5.8388 -3.1198 20 6 4.5024 -4.5142 -2.0849 21 1 5.2637 -4.4534 -1.3213 22 6 4.5839 -3.7079 -3.2120 23 7 3.5560 -3.6122 -4.0283 24 14 6.1525 -2.7589 -3.5699 25 1 7.2818 -3.7103 -3.7271 26 1 5.9841 -1.9786 -4.8221 27 1 6.4384 -1.8328 -2.4449 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 4.4205 2.3669 2.1395 32 1 4.9694 3.8079 1.2508 33 1 3.2449 3.3657 1.2513 34 1 6.0676 0.9692 -0.8922 35 1 6.6173 2.4087 -0.0007 36 1 6.0688 0.9674 0.8877 37 1 3.2432 3.3683 -1.2471 38 1 4.9677 3.8104 -1.2481 39 1 4.4175 2.3713 -2.1389 40 1 3.5259 -3.4033 -0.0009 41 1 2.6610 -5.3161 2.0266 42 1 1.0052 -4.6818 1.8722 43 1 1.3551 -6.3724 1.4382 44 1 3.9653 -5.8972 0.0282 45 1 2.6589 -6.8691 -0.6907 46 1 1.9284 -5.1190 -3.3525 47 1 3.3924 -5.9228 -3.9680 48 1 2.2651 -6.8113 -2.9156 49 1 3.6128 -3.0485 -4.8157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498465204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:31 Heat of formation + Delta-G solvation = -5.985185 kcal Electronic energy + Delta-G solvation = -28948.995505 eV Core-core repulsion = 25230.412148 eV Total energy + Delta-G solvation = -3718.583357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47880 -40.40123 -38.16711 -37.63608 -35.75105 -33.30367 -32.46601 -31.76139 -29.05930 -28.39238 -28.21177 -28.04158 -27.38098 -26.03957 -24.00488 -22.94524 -21.43966 -21.10959 -20.33919 -18.80220 -18.64895 -17.75051 -17.04674 -16.81846 -16.55971 -16.09729 -15.71859 -15.46637 -15.19960 -15.02206 -15.01481 -14.69196 -14.50878 -14.44947 -13.93485 -13.64255 -13.58969 -13.39592 -13.17547 -13.09396 -12.99122 -12.85052 -12.69967 -12.66037 -12.58507 -12.52149 -12.29349 -12.15019 -12.01750 -12.00802 -11.97857 -11.95890 -11.69980 -11.04792 -10.68178 -10.58945 -10.50557 -9.97433 -9.69454 -8.77105 -7.78355 -5.25358 -0.77241 0.16757 0.59204 1.39104 1.44304 1.47628 1.52125 2.10539 2.37052 2.52072 2.84072 3.37789 3.61790 3.69594 3.86574 3.88701 3.89122 4.05482 4.17886 4.24024 4.42085 4.52091 4.62584 4.64491 4.69423 4.69582 4.74894 4.80806 4.81399 4.83508 4.88953 4.91598 4.92723 4.98841 5.00199 5.14987 5.17332 5.25471 5.32049 5.33555 5.36934 5.39441 5.64172 5.68055 5.74178 6.33572 6.50623 6.63767 7.16643 7.23680 7.89544 8.35432 9.24901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.005303 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.981299 B = 5279.231344 C = 6907.739893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.131 3.869 3 N -0.487 5.487 4 C 0.069 3.931 5 C 0.006 3.994 6 C -0.126 4.126 7 C -0.159 4.159 8 C -0.133 4.133 9 S 0.186 5.814 10 C -0.322 4.322 11 C 0.591 3.409 12 O -0.571 6.571 13 N -0.681 5.681 14 C 0.120 3.880 15 H 0.046 0.954 16 C -0.146 4.146 17 C 0.141 3.859 18 N -0.612 5.612 19 C 0.180 3.820 20 C -0.248 4.248 21 H 0.078 0.922 22 C -0.041 4.041 23 N -0.934 5.934 24 Si 0.934 3.066 25 H -0.279 1.279 26 H -0.306 1.306 27 H -0.254 1.254 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.401 0.599 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.078 0.922 46 H -0.010 1.010 47 H 0.019 0.981 48 H 0.028 0.972 49 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.938 9.270 12.495 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 N -0.201 5.201 4 C -0.206 4.206 5 C 0.002 3.998 6 C -0.185 4.185 7 C -0.217 4.217 8 C -0.192 4.192 9 S 0.447 5.553 10 C -0.446 4.446 11 C 0.377 3.623 12 O -0.454 6.454 13 N -0.329 5.329 14 C 0.013 3.987 15 H 0.064 0.936 16 C -0.205 4.205 17 C 0.014 3.986 18 N -0.334 5.334 19 C 0.035 3.965 20 C -0.378 4.378 21 H 0.095 0.905 22 C -0.236 4.236 23 N -0.580 5.580 24 Si 0.763 3.237 25 H -0.205 1.205 26 H -0.233 1.233 27 H -0.178 1.178 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.237 0.763 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.009 0.991 47 H 0.038 0.962 48 H 0.047 0.953 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.907 9.091 12.348 15.823 hybrid contribution -0.214 0.414 -1.127 1.220 sum 3.693 9.505 11.221 15.162 Atomic orbital electron populations 1.20537 0.85625 1.03745 1.03844 1.20877 0.99249 0.85214 0.95463 1.65993 1.04884 1.30667 1.18581 1.28183 0.94551 0.98679 0.99192 1.19574 0.91102 0.89767 0.99401 1.21814 1.03113 0.99424 0.94152 1.22116 0.94049 1.02973 1.02519 1.21861 1.03211 0.99539 0.94561 1.83949 1.03984 1.02165 1.65202 1.25580 0.98016 0.99051 1.21983 1.16861 0.85987 0.83343 0.76083 1.90663 1.15452 1.85681 1.53632 1.45691 1.09502 1.05742 1.71971 1.21848 0.98226 0.81555 0.97104 0.93576 1.22034 1.01845 1.02003 0.94629 1.21411 0.95958 0.95431 0.85822 1.44121 1.35946 1.51980 1.01390 1.20487 0.94029 0.93195 0.88827 1.19334 0.99641 1.13396 1.05427 0.90465 1.25590 0.99058 0.99503 0.99485 1.70253 1.30096 1.42161 1.15506 0.85812 0.80881 0.79386 0.77658 1.20535 1.23334 1.17832 0.89241 0.89761 0.90495 0.92414 0.88629 0.92456 0.93218 0.87483 0.91236 0.92343 0.88392 0.94037 0.76336 0.91166 0.94071 0.89561 0.91422 0.90338 0.99121 0.96200 0.95311 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.61 9.69 71.24 0.69 -1.92 16 2 C 0.13 4.83 6.79 42.09 0.29 5.11 16 3 N -0.49 -16.36 10.48 -178.30 -1.87 -18.23 16 4 C 0.07 2.08 5.78 88.46 0.51 2.59 16 5 C 0.01 0.12 0.99 -52.92 -0.05 0.07 16 6 C -0.13 -2.14 8.45 71.98 0.61 -1.53 16 7 C -0.16 -2.93 7.53 71.98 0.54 -2.39 16 8 C -0.13 -2.73 8.45 71.98 0.61 -2.13 16 9 S 0.19 6.22 20.68 -56.49 -1.17 5.05 16 10 C -0.32 -12.73 6.48 23.88 0.15 -12.57 16 11 C 0.59 25.54 7.74 86.45 0.67 26.21 16 12 O -0.57 -26.78 13.93 -4.30 -0.06 -26.84 16 13 N -0.68 -27.41 4.48 -446.49 -2.00 -29.41 16 14 C 0.12 4.44 2.88 44.99 0.13 4.57 16 15 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 16 C -0.15 -4.15 9.48 71.98 0.68 -3.47 16 17 C 0.14 5.12 5.36 86.38 0.46 5.58 16 18 N -0.61 -28.67 2.82 -726.95 -2.05 -30.71 16 19 C 0.18 8.86 9.01 127.77 1.15 10.01 16 20 C -0.25 -12.35 8.02 84.03 0.67 -11.67 16 21 H 0.08 3.61 7.84 -2.91 -0.02 3.59 16 22 C -0.04 -2.18 5.13 84.86 0.44 -1.74 16 23 N -0.93 -54.72 10.59 21.65 0.23 -54.49 16 24 Si 0.93 42.40 29.57 68.60 2.03 44.43 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.95 6.01 -2.39 -0.01 2.93 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.10 7.92 -2.39 -0.02 1.08 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.22 7.91 -2.39 -0.02 1.20 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.40 15.90 6.58 -92.71 -0.61 15.29 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 2.01 8.14 -2.38 -0.02 2.00 16 44 H 0.07 2.23 8.03 -2.39 -0.02 2.22 16 45 H 0.08 2.49 7.86 -2.39 -0.02 2.48 16 46 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 47 H 0.02 1.04 7.19 -2.39 -0.02 1.02 16 48 H 0.03 1.20 7.84 -2.39 -0.02 1.18 16 49 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -67.95 403.87 2.99 -64.97 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.32 Total: 28.52 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.55 Total: 16.72 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -5.69 Total: -132.85 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.84 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.17 Total: 5.05 kcal Total: -67.95 2.99 -64.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498465204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.983 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds