Wall clock time and date at job start Tue Mar 31 2020 23:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46965 * 101.04615 * 3 2 1 5 5 N 1.46893 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.46901 * 111.00075 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52232 * 204.99773 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.36950 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00067 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46942 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46977 * 120.00263 * 21 19 17 24 24 H 1.48496 * 109.47125 * 240.00477 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 4.44653 * 5.63325 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47463 * 341.04538 * 3 2 1 29 29 H 1.08997 * 109.47008 * 221.04109 * 3 2 1 30 30 H 1.08994 * 109.47092 * 59.99696 * 4 3 2 31 31 H 1.09002 * 109.46574 * 300.00004 * 4 3 2 32 32 H 1.00905 * 110.99849 * 303.95151 * 5 4 3 33 33 H 1.09006 * 109.52072 * 325.11887 * 6 5 4 34 34 H 1.09006 * 109.50431 * 62.43414 * 7 6 5 35 35 H 1.08996 * 109.50401 * 302.31288 * 7 6 5 36 36 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 37 37 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 38 38 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 39 39 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 40 40 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 41 41 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 42 42 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 43 43 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 44 44 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 45 45 H 0.97001 * 119.99673 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 47 47 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 48 48 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 49 49 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.2773 -1.4158 5 7 4.6248 0.2773 -1.4160 6 6 5.1512 0.5409 -2.7619 7 6 6.5556 -0.0558 -2.8880 8 6 7.1219 0.2729 -4.2713 9 7 7.1720 1.7300 -4.4474 10 6 7.8381 2.0853 -5.7075 11 6 7.6535 3.5798 -5.9782 12 7 8.3173 3.9340 -7.2353 13 6 8.2858 5.2064 -7.6787 14 8 7.7083 6.0581 -7.0368 15 6 8.9690 5.5709 -8.9715 16 16 8.7505 7.3389 -9.2918 17 6 9.6214 7.4836 -10.8167 18 1 10.0849 6.6138 -11.2584 19 6 9.7118 8.7153 -11.4500 20 7 9.1474 9.7754 -10.9113 21 14 10.6358 8.8688 -13.0663 22 1 11.1746 7.5411 -13.4565 23 1 9.7109 9.3566 -14.1208 24 1 11.7559 9.8306 -12.9067 25 6 5.8291 2.3197 -4.3774 26 6 5.2242 2.0520 -2.9974 27 1 -1.0500 0.0002 0.0001 28 1 3.0099 -0.9710 0.3338 29 1 3.0090 0.7759 0.6748 30 1 2.7921 1.2490 -1.7496 31 1 2.7929 -0.4980 -2.0906 32 1 4.9865 0.9434 -0.7498 33 1 4.4948 0.0877 -3.5049 34 1 6.5040 -1.1375 -2.7636 35 1 7.2018 0.3690 -2.1199 36 1 6.4829 -0.1639 -5.0386 37 1 8.1276 -0.1383 -4.3589 38 1 7.4004 1.5114 -6.5243 39 1 8.9016 1.8582 -5.6330 40 1 6.5900 3.8069 -6.0528 41 1 8.0912 4.1537 -5.1615 42 1 8.7793 3.2529 -7.7484 43 1 10.0326 5.3444 -8.8968 44 1 8.5316 4.9966 -9.7881 45 1 9.2109 10.6362 -11.3538 46 1 5.8957 3.3951 -4.5423 47 1 5.1960 1.8734 -5.1443 48 1 4.2213 2.4764 -2.9511 49 1 5.8495 2.5100 -2.2309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501249465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:46 Heat of formation + Delta-G solvation = 13.337564 kcal Electronic energy + Delta-G solvation = -25542.166952 eV Core-core repulsion = 21824.421492 eV Total energy + Delta-G solvation = -3717.745460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.96595 -39.05543 -37.27090 -35.25681 -34.15409 -32.43602 -32.24121 -31.28305 -30.12083 -29.01726 -27.17014 -25.48277 -24.25869 -23.73632 -22.66654 -21.49926 -20.44722 -20.24332 -18.52593 -17.84723 -16.85362 -16.32970 -16.18540 -15.85038 -15.68272 -15.47537 -15.05113 -14.84490 -14.81005 -14.58691 -14.22317 -14.11767 -13.80427 -13.62986 -13.12558 -13.06096 -13.00723 -12.56457 -12.44088 -12.36942 -12.19059 -11.90679 -11.60369 -11.54450 -11.36699 -11.07589 -11.02567 -10.97034 -10.87048 -10.75960 -10.58163 -10.53428 -9.81341 -9.44150 -9.08476 -8.93152 -8.85385 -8.67651 -8.23817 -6.50634 -6.22406 -3.92933 2.33927 2.40811 2.94252 3.08737 3.21104 3.25306 3.30450 3.48347 3.53496 3.88562 4.12509 4.19709 4.35595 4.39263 4.56198 4.58838 4.70485 4.77723 4.84546 4.87834 4.99632 5.00759 5.12960 5.14276 5.16897 5.20044 5.21861 5.28518 5.39666 5.46814 5.52015 5.56015 5.58768 5.61672 5.66589 5.74535 5.76876 5.87238 5.88809 5.92318 6.13025 6.51019 6.53799 6.69680 6.72205 6.88211 7.18064 7.59279 7.67956 8.34838 8.59612 9.23127 10.85118 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.001439 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.907023 B =19457.371575 C =20273.174119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C -0.011 4.011 4 C 0.063 3.937 5 N -0.685 5.685 6 C 0.087 3.913 7 C -0.102 4.102 8 C 0.056 3.944 9 N -0.532 5.532 10 C 0.046 3.954 11 C 0.118 3.882 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.048 3.952 26 C -0.145 4.145 27 H 0.217 0.783 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.344 0.656 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.088 0.912 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -24.699 19.237 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.189 4.189 3 C -0.048 4.048 4 C -0.066 4.066 5 N -0.315 5.315 6 C -0.023 4.023 7 C -0.140 4.140 8 C -0.072 4.072 9 N -0.258 5.258 10 C -0.082 4.082 11 C -0.007 4.007 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.080 4.080 26 C -0.185 4.185 27 H 0.234 0.766 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.231 0.769 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.206 -23.581 20.640 32.959 hybrid contribution 0.549 -0.563 -2.803 2.911 sum -9.657 -24.144 17.837 31.534 Atomic orbital electron populations 1.24960 0.96038 1.01189 1.00250 1.23032 0.94493 1.00449 1.00886 1.18655 0.84495 1.03930 0.97724 1.21896 0.87880 1.00688 0.96152 1.60576 1.06703 1.56547 1.07639 1.21651 0.96569 0.93934 0.90169 1.21534 0.95018 1.00851 0.96606 1.22117 1.01051 0.87194 0.96873 1.61946 1.19186 1.10755 1.33875 1.22263 1.00333 0.95256 0.90365 1.21391 0.98057 0.94215 0.87020 1.45928 1.58214 1.10546 1.24756 1.20300 0.79791 0.81383 0.86679 1.90704 1.42588 1.48171 1.57628 1.23529 1.02877 1.07529 0.96451 1.85408 1.72149 0.96626 1.29228 1.22911 1.39657 0.97720 1.08058 0.90868 1.24991 0.95544 0.94759 0.98270 1.70029 1.41816 0.99767 1.38676 0.86116 0.79236 0.78300 0.81841 1.19612 1.20575 1.20546 1.22203 0.88559 1.00928 0.96334 1.22315 1.00759 0.97183 0.98205 0.76611 0.88652 0.89616 0.94615 0.90659 0.83793 0.90789 0.90801 0.90786 0.94811 0.90290 0.94140 0.89778 0.91482 0.90695 0.76885 0.89150 0.89234 0.92231 0.89414 0.94707 0.91638 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.37 19.25 29.55 0.57 -0.80 16 2 C -0.19 -1.37 13.34 -37.12 -0.50 -1.87 16 3 C -0.01 -0.06 5.96 -29.51 -0.18 -0.24 16 4 C 0.06 0.36 5.44 -3.83 -0.02 0.34 16 5 N -0.68 -3.91 6.26 -106.60 -0.67 -4.57 16 6 C 0.09 0.55 2.53 -67.59 -0.17 0.38 16 7 C -0.10 -0.64 5.70 -26.65 -0.15 -0.79 16 8 C 0.06 0.38 5.42 -3.83 -0.02 0.36 16 9 N -0.53 -4.42 4.81 -234.67 -1.13 -5.55 16 10 C 0.05 0.39 5.39 -3.82 -0.02 0.37 16 11 C 0.12 1.37 4.92 -4.04 -0.02 1.35 16 12 N -0.74 -9.73 5.56 -60.29 -0.33 -10.06 16 13 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 14 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.05 0.40 4.85 -3.84 -0.02 0.38 16 26 C -0.15 -1.02 5.35 -26.65 -0.14 -1.16 16 27 H 0.22 0.75 7.80 -54.09 -0.42 0.33 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.23 7.51 -51.93 -0.39 -0.16 16 31 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.34 1.72 8.45 -39.29 -0.33 1.39 16 33 H 0.07 0.51 7.80 -51.93 -0.41 0.11 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 0.84 5.81 -51.93 -0.30 0.54 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.45 7.55 -51.93 -0.39 0.06 16 49 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -34.59 413.81 -11.01 -45.59 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.36 Total: 0.66 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.34 Total: -7.63 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -1.40 Total: -45.63 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.59 -11.01 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501249465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.929 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds