Wall clock time and date at job start Tue Mar 31 2020 23:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46965 * 101.04615 * 3 2 1 5 5 N 1.46893 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.46901 * 111.00075 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52232 * 204.99773 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.36950 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00067 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46942 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46977 * 120.00263 * 21 19 17 24 24 H 1.48496 * 109.47125 * 240.00477 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 4.44653 * 5.63325 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47463 * 341.04538 * 3 2 1 29 29 H 1.08997 * 109.47008 * 221.04109 * 3 2 1 30 30 H 1.08994 * 109.47092 * 59.99696 * 4 3 2 31 31 H 1.09002 * 109.46574 * 300.00004 * 4 3 2 32 32 H 1.00905 * 110.99849 * 303.95151 * 5 4 3 33 33 H 1.09006 * 109.52072 * 325.11887 * 6 5 4 34 34 H 1.09006 * 109.50431 * 62.43414 * 7 6 5 35 35 H 1.08996 * 109.50401 * 302.31288 * 7 6 5 36 36 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 37 37 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 38 38 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 39 39 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 40 40 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 41 41 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 42 42 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 43 43 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 44 44 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 45 45 H 0.97001 * 119.99673 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 47 47 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 48 48 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 49 49 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.2773 -1.4158 5 7 4.6248 0.2773 -1.4160 6 6 5.1512 0.5409 -2.7619 7 6 6.5556 -0.0558 -2.8880 8 6 7.1219 0.2729 -4.2713 9 7 7.1720 1.7300 -4.4474 10 6 7.8381 2.0853 -5.7075 11 6 7.6535 3.5798 -5.9782 12 7 8.3173 3.9340 -7.2353 13 6 8.2858 5.2064 -7.6787 14 8 7.7083 6.0581 -7.0368 15 6 8.9690 5.5709 -8.9715 16 16 8.7505 7.3389 -9.2918 17 6 9.6214 7.4836 -10.8167 18 1 10.0849 6.6138 -11.2584 19 6 9.7118 8.7153 -11.4500 20 7 9.1474 9.7754 -10.9113 21 14 10.6358 8.8688 -13.0663 22 1 11.1746 7.5411 -13.4565 23 1 9.7109 9.3566 -14.1208 24 1 11.7559 9.8306 -12.9067 25 6 5.8291 2.3197 -4.3774 26 6 5.2242 2.0520 -2.9974 27 1 -1.0500 0.0002 0.0001 28 1 3.0099 -0.9710 0.3338 29 1 3.0090 0.7759 0.6748 30 1 2.7921 1.2490 -1.7496 31 1 2.7929 -0.4980 -2.0906 32 1 4.9865 0.9434 -0.7498 33 1 4.4948 0.0877 -3.5049 34 1 6.5040 -1.1375 -2.7636 35 1 7.2018 0.3690 -2.1199 36 1 6.4829 -0.1639 -5.0386 37 1 8.1276 -0.1383 -4.3589 38 1 7.4004 1.5114 -6.5243 39 1 8.9016 1.8582 -5.6330 40 1 6.5900 3.8069 -6.0528 41 1 8.0912 4.1537 -5.1615 42 1 8.7793 3.2529 -7.7484 43 1 10.0326 5.3444 -8.8968 44 1 8.5316 4.9966 -9.7881 45 1 9.2109 10.6362 -11.3538 46 1 5.8957 3.3951 -4.5423 47 1 5.1960 1.8734 -5.1443 48 1 4.2213 2.4764 -2.9511 49 1 5.8495 2.5100 -2.2309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501249465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:45 Heat of formation + Delta-G solvation = -12.186343 kcal Electronic energy + Delta-G solvation = -25543.273752 eV Core-core repulsion = 21824.421492 eV Total energy + Delta-G solvation = -3718.852260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84469 -40.21646 -37.89100 -36.14762 -34.96494 -34.58489 -32.96033 -31.87996 -31.31485 -29.82159 -28.13507 -27.58160 -24.96975 -24.29154 -23.21364 -22.24163 -21.83108 -20.85291 -19.83183 -18.97081 -17.95331 -17.45525 -17.05716 -16.88201 -16.84935 -16.48413 -16.11874 -15.95634 -15.75305 -15.52009 -15.31630 -14.84157 -14.77595 -14.56825 -14.41657 -14.28981 -13.61697 -13.56357 -13.52130 -13.16130 -13.01723 -12.97034 -12.91351 -12.64477 -12.57054 -12.46663 -12.18704 -11.97955 -11.71247 -11.51919 -11.48689 -11.15968 -11.08618 -11.02464 -10.99741 -10.27419 -10.15201 -9.39472 -9.30205 -8.67103 -8.34931 -6.13100 1.26398 1.41620 1.46793 1.57997 1.59167 1.82833 1.89951 2.17036 2.27396 2.97397 2.99576 3.06348 3.33248 3.67886 3.71249 3.80410 3.91753 4.00255 4.04850 4.07770 4.19342 4.27354 4.30255 4.31282 4.42668 4.44359 4.50922 4.53811 4.59657 4.60777 4.75326 4.86322 4.89170 4.91980 4.95308 5.02775 5.04520 5.11395 5.17057 5.22841 5.37541 5.39043 5.42275 6.00455 6.03078 6.09515 6.20067 6.43267 6.48206 6.69181 7.06669 7.22231 8.74631 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.001439 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.907023 B =19457.371575 C =20273.174119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.217 4.217 3 C -0.008 4.008 4 C 0.069 3.931 5 N -0.682 5.682 6 C 0.092 3.908 7 C -0.096 4.096 8 C 0.057 3.943 9 N -0.540 5.540 10 C 0.056 3.944 11 C 0.120 3.880 12 N -0.711 5.711 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.049 3.951 26 C -0.139 4.139 27 H 0.240 0.760 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.349 0.651 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.064 0.936 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.585 -27.287 18.652 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.218 4.218 3 C -0.044 4.044 4 C -0.060 4.060 5 N -0.313 5.313 6 C -0.018 4.018 7 C -0.134 4.134 8 C -0.071 4.071 9 N -0.266 5.266 10 C -0.072 4.072 11 C -0.004 4.004 12 N -0.366 5.366 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.080 4.080 26 C -0.178 4.178 27 H 0.257 0.743 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.254 -26.243 20.065 34.306 hybrid contribution 0.201 0.137 -2.521 2.533 sum -9.052 -26.106 17.544 32.730 Atomic orbital electron populations 1.25719 0.97032 1.00587 0.99568 1.23605 0.95491 1.01112 1.01586 1.18665 0.83747 1.04479 0.97558 1.21806 0.87842 1.00030 0.96321 1.60579 1.06625 1.56635 1.07413 1.21583 0.96714 0.93164 0.90373 1.21481 0.94573 1.01141 0.96220 1.22170 1.01818 0.85981 0.97139 1.61970 1.18972 1.11912 1.33699 1.22175 1.01376 0.92599 0.91022 1.21441 0.97070 0.96425 0.85421 1.45632 1.56961 1.09012 1.25023 1.20082 0.79354 0.82596 0.86019 1.90695 1.44916 1.50035 1.58843 1.23368 1.04646 1.01936 0.98066 1.85605 1.72918 1.04013 1.30118 1.23244 1.39609 0.98422 1.08056 0.89819 1.26126 0.96341 0.94212 1.02422 1.70193 1.43449 1.00500 1.40709 0.84902 0.77667 0.78937 0.76414 1.17941 1.19979 1.19949 1.22154 0.88888 0.99885 0.97061 1.22253 1.00438 0.97846 0.97297 0.74327 0.88217 0.88695 0.95319 0.91311 0.83228 0.91232 0.90125 0.91250 0.94521 0.89201 0.92871 0.88349 0.92439 0.92267 0.74520 0.86996 0.87062 0.92003 0.91154 0.94804 0.91777 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.22 -3.07 13.34 31.13 0.42 -2.65 16 3 C -0.01 -0.08 5.96 28.79 0.17 0.09 16 4 C 0.07 0.76 5.44 86.31 0.47 1.23 16 5 N -0.68 -7.10 6.26 -491.18 -3.07 -10.17 16 6 C 0.09 1.06 2.53 44.99 0.11 1.17 16 7 C -0.10 -1.03 5.70 30.65 0.17 -0.86 16 8 C 0.06 0.65 5.42 86.33 0.47 1.11 16 9 N -0.54 -8.11 4.81 -896.35 -4.31 -12.42 16 10 C 0.06 0.83 5.39 86.31 0.46 1.29 16 11 C 0.12 2.68 4.92 86.38 0.43 3.11 16 12 N -0.71 -17.44 5.56 -463.05 -2.57 -20.02 16 13 C 0.53 19.60 7.85 87.66 0.69 20.28 16 14 O -0.57 -26.49 15.86 -3.03 -0.05 -26.54 16 15 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 21 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.05 0.79 4.85 86.33 0.42 1.21 16 26 C -0.14 -1.88 5.35 30.64 0.16 -1.71 16 27 H 0.24 1.35 7.80 -4.42 -0.03 1.32 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 0.36 7.51 -2.39 -0.02 0.34 16 31 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 32 H 0.35 3.13 8.45 -89.69 -0.76 2.37 16 33 H 0.07 0.89 7.80 -2.38 -0.02 0.87 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.09 0.86 8.12 -2.38 -0.02 0.84 16 38 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.44 6.21 -2.39 -0.01 1.42 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.42 7.02 8.47 -92.71 -0.79 6.24 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.07 1.38 5.81 -2.39 -0.01 1.37 16 47 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.88 7.55 -2.39 -0.02 0.86 16 49 H 0.07 1.04 8.10 -2.38 -0.02 1.02 16 Total: -1.00 -76.99 413.81 -2.50 -79.49 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.61 Total: 20.41 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 6.96 Total: -10.72 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -9.67 Total: -98.40 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -76.99 -2.50 -79.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501249465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.299 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds