Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47127 * 2 1 4 4 C 1.50701 * 109.47305 * 240.00264 * 2 1 3 5 5 N 1.30938 * 122.90307 * 55.44398 * 4 2 1 6 6 C 1.29431 * 117.36208 * 179.82641 * 5 4 2 7 7 S 1.70949 * 110.38885 * 0.42880 * 6 5 4 8 8 C 1.35664 * 122.90222 * 235.74353 * 4 2 1 9 9 C 1.46677 * 126.13230 * 359.97438 * 8 4 2 10 10 O 1.21688 * 120.00080 * 93.96845 * 9 8 4 11 11 N 1.34779 * 120.00465 * 273.96940 * 9 8 4 12 12 C 1.46503 * 119.99601 * 5.36211 * 11 9 8 13 13 C 1.46495 * 120.00422 * 185.36162 * 11 9 8 14 14 C 1.52999 * 109.46812 * 90.00120 * 13 11 9 15 15 C 1.53005 * 109.47130 * 299.99843 * 14 13 11 16 16 C 1.53001 * 109.47255 * 60.00073 * 14 13 11 17 17 C 1.53004 * 109.46941 * 180.02562 * 14 13 11 18 18 N 1.46500 * 109.47007 * 180.02562 * 17 14 13 19 19 C 1.36941 * 120.00049 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99689 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99868 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00578 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99612 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47144 * 90.00188 * 23 21 19 25 25 H 1.48507 * 109.47176 * 209.99644 * 23 21 19 26 26 H 1.48501 * 109.47277 * 329.99936 * 23 21 19 27 27 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47281 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47371 * 299.99731 * 1 2 3 30 30 H 1.08999 * 109.46856 * 120.00072 * 2 1 3 31 31 H 1.08999 * 109.46776 * 59.99904 * 3 2 1 32 32 H 1.08995 * 109.47187 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46786 * 300.00317 * 3 2 1 34 34 H 1.08005 * 124.80400 * 180.23148 * 6 5 4 35 35 H 1.09007 * 109.47136 * 84.53755 * 12 11 9 36 36 H 1.08995 * 109.47565 * 204.53634 * 12 11 9 37 37 H 1.09001 * 109.47655 * 324.54118 * 12 11 9 38 38 H 1.09000 * 109.47364 * 209.99817 * 13 11 9 39 39 H 1.08996 * 109.47376 * 330.00319 * 13 11 9 40 40 H 1.08993 * 109.46686 * 60.00466 * 15 14 13 41 41 H 1.09002 * 109.47022 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47195 * 300.00409 * 15 14 13 43 43 H 1.09000 * 109.47241 * 60.00106 * 16 14 13 44 44 H 1.09005 * 109.46672 * 179.97438 * 16 14 13 45 45 H 1.08993 * 109.47140 * 299.99651 * 16 14 13 46 46 H 1.09000 * 109.47121 * 299.99628 * 17 14 13 47 47 H 1.08996 * 109.47490 * 60.00050 * 17 14 13 48 48 H 0.97003 * 120.00089 * 359.97438 * 18 17 14 49 49 H 0.96997 * 120.00374 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.6816 -0.3654 -2.4439 6 6 2.1806 -1.0478 -3.4241 7 16 3.2039 -2.2818 -2.8304 8 6 2.8825 -1.7662 -1.1764 9 6 3.4349 -2.3704 0.0407 10 8 2.8813 -3.3267 0.5504 11 7 4.5555 -1.8665 0.5945 12 6 5.1561 -0.6457 0.0510 13 6 5.1730 -2.5394 1.7399 14 6 6.1894 -3.5679 1.2399 15 6 5.4797 -4.6016 0.3630 16 6 7.2704 -2.8601 0.4206 17 6 6.8339 -4.2712 2.4362 18 7 7.8075 -5.2556 1.9574 19 6 8.5142 -6.0118 2.8541 20 1 8.3540 -5.8821 3.9143 21 6 9.4363 -6.9449 2.4005 22 7 9.6311 -7.1034 1.1085 23 14 10.4007 -7.9759 3.6238 24 1 9.6530 -9.2251 3.9163 25 1 11.7266 -8.3160 3.0478 26 1 10.5893 -7.2062 4.8797 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.9766 -0.8656 -4.4689 35 1 4.6659 0.2252 0.4862 36 1 6.2183 -0.6240 0.2941 37 1 5.0307 -0.6299 -1.0316 38 1 5.6787 -1.8031 2.3646 39 1 4.4029 -3.0436 2.3236 40 1 5.0203 -4.1009 -0.4892 41 1 6.2038 -5.3341 0.0064 42 1 4.7095 -5.1058 0.9467 43 1 7.7760 -2.1238 1.0453 44 1 7.9947 -3.5930 0.0648 45 1 6.8110 -2.3595 -0.4316 46 1 7.3394 -3.5351 3.0612 47 1 6.0636 -4.7755 3.0195 48 1 7.9516 -5.3718 1.0052 49 1 10.2757 -7.7552 0.7915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505839317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = 15.416126 kcal Electronic energy + Delta-G solvation = -28454.750177 eV Core-core repulsion = 24737.094851 eV Total energy + Delta-G solvation = -3717.655327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89154 -39.67125 -37.31908 -35.29010 -35.05669 -33.11908 -30.81707 -30.04113 -28.01291 -27.38657 -26.95156 -26.26286 -25.71192 -25.00334 -22.86892 -22.49427 -20.99979 -18.84395 -18.38888 -18.08170 -17.34816 -17.19053 -16.39012 -15.92564 -15.06557 -14.84891 -14.60469 -14.49567 -14.40685 -14.14751 -13.76552 -13.55093 -13.37579 -13.23190 -13.05586 -12.76977 -12.59845 -12.51130 -12.39810 -12.30704 -12.09980 -11.45761 -11.29077 -11.27658 -11.19032 -11.14654 -10.97959 -10.80388 -10.73269 -10.47427 -10.28756 -10.19100 -9.95690 -9.83589 -9.67332 -9.61968 -9.12660 -8.83757 -8.64306 -6.86765 -5.73324 -3.00845 0.20127 0.80559 1.33869 2.37905 2.61895 2.94315 3.45736 3.50848 3.52232 3.81122 4.31417 4.55629 4.62416 4.63327 4.84908 4.94243 4.99919 5.09048 5.10527 5.13695 5.29740 5.38838 5.39499 5.45524 5.55894 5.58430 5.59330 5.68062 5.70126 5.80766 5.88285 5.93445 5.98099 6.05963 6.09099 6.11944 6.28072 6.37594 6.48760 6.57705 6.73107 6.76357 6.93136 6.94826 7.18913 7.34436 7.73374 7.98585 8.46186 9.57354 10.16217 10.50969 11.49822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.002628 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.530352 B =10650.759505 C =11140.383577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.141 4.141 4 C 0.114 3.886 5 N -0.461 5.461 6 C 0.012 3.988 7 S 0.193 5.807 8 C -0.272 4.272 9 C 0.596 3.404 10 O -0.512 6.512 11 N -0.595 5.595 12 C 0.074 3.926 13 C 0.126 3.874 14 C -0.086 4.086 15 C -0.125 4.125 16 C -0.136 4.136 17 C 0.166 3.834 18 N -0.728 5.728 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 19.625 -8.595 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.199 4.199 4 C -0.022 4.022 5 N -0.174 5.174 6 C -0.283 4.283 7 S 0.448 5.552 8 C -0.396 4.396 9 C 0.380 3.620 10 O -0.388 6.388 11 N -0.328 5.328 12 C -0.069 4.069 13 C 0.004 3.996 14 C -0.088 4.088 15 C -0.182 4.182 16 C -0.193 4.193 17 C 0.038 3.962 18 N -0.373 5.373 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.220 0.780 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.220 0.780 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.846 18.691 -8.845 26.052 hybrid contribution 0.402 -0.270 0.761 0.902 sum -15.444 18.422 -8.085 25.362 Atomic orbital electron populations 1.21756 0.93299 1.02261 1.02404 1.19824 0.96871 0.95914 0.91869 1.21823 1.01041 0.94418 1.02573 1.20432 0.95097 0.93292 0.93403 1.65898 1.24278 1.28859 0.98415 1.28647 0.99790 0.96399 1.03493 1.84305 1.43161 1.31799 0.95891 1.25512 1.10173 1.05025 0.98912 1.16712 0.80376 0.82742 0.82194 1.90881 1.59192 1.26500 1.62195 1.47657 1.25296 1.26751 1.33063 1.21977 0.99797 0.86030 0.99117 1.21665 0.96198 0.95261 0.86504 1.21123 0.94912 0.95221 0.97515 1.21726 1.00040 0.98215 0.98241 1.21883 0.98272 1.00437 0.98755 1.20570 0.91678 0.91382 0.92574 1.42385 1.45315 1.42997 1.06591 1.19236 1.14824 1.13198 0.89460 0.91264 1.24713 1.00332 1.00137 0.95890 1.69652 1.38643 1.38349 1.11721 0.86198 0.79377 0.80490 0.80178 1.21790 1.21854 1.20827 0.92626 0.91608 0.91996 0.89918 0.91869 0.92569 0.91689 0.77961 0.92434 0.89648 0.91812 0.90112 0.89406 0.94854 0.91781 0.92458 0.93101 0.91338 0.93701 0.96390 0.96222 0.78013 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.10 37.16 0.34 -0.90 16 2 C -0.02 -0.23 3.21 -91.77 -0.29 -0.52 16 3 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 4 C 0.11 1.24 5.38 -83.89 -0.45 0.79 16 5 N -0.46 -4.70 10.33 -11.53 -0.12 -4.82 16 6 C 0.01 0.10 12.22 51.75 0.63 0.73 16 7 S 0.19 1.86 23.21 -107.50 -2.50 -0.64 16 8 C -0.27 -3.23 4.39 -37.10 -0.16 -3.39 16 9 C 0.60 8.32 4.64 -12.85 -0.06 8.26 16 10 O -0.51 -9.03 15.31 5.20 0.08 -8.95 16 11 N -0.60 -7.22 2.40 -183.13 -0.44 -7.66 16 12 C 0.07 0.67 8.95 59.85 0.54 1.21 16 13 C 0.13 1.70 4.59 -4.04 -0.02 1.68 16 14 C -0.09 -1.41 0.60 -154.50 -0.09 -1.51 16 15 C -0.12 -2.26 7.05 37.16 0.26 -1.99 16 16 C -0.14 -2.09 7.07 37.16 0.26 -1.83 16 17 C 0.17 3.36 5.15 -4.04 -0.02 3.34 16 18 N -0.73 -18.40 5.00 -59.91 -0.30 -18.70 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.87 7.10 -51.93 -0.37 0.50 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 6.71 -51.93 -0.35 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.20 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.06 0.44 6.71 -51.92 -0.35 0.09 16 36 H 0.08 0.73 6.30 -51.93 -0.33 0.40 16 37 H 0.06 0.56 7.00 -51.93 -0.36 0.20 16 38 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.09 1.30 7.35 -51.93 -0.38 0.92 16 40 H 0.03 0.56 6.22 -51.93 -0.32 0.23 16 41 H 0.06 1.30 6.86 -51.93 -0.36 0.94 16 42 H 0.06 1.11 7.85 -51.93 -0.41 0.70 16 43 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 45 H 0.04 0.59 6.07 -51.93 -0.32 0.28 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.18 5.36 -40.82 -0.22 9.97 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -33.42 394.87 -8.47 -41.89 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.88 Total: 5.17 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 1.03 Total: -2.20 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.13 Total: -58.85 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.50 Total: -0.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.42 -8.47 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505839317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.309 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds