Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80223 * 90.02070 * 4 3 2 6 6 C 1.30943 * 117.36258 * 179.97438 * 5 4 3 7 7 C 1.50699 * 122.90461 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19380 * 0.02562 * 6 5 4 9 9 C 1.46675 * 126.13200 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99989 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00034 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00248 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47245 * 34.99805 * 12 11 9 14 14 C 1.53003 * 109.47343 * 275.00050 * 12 11 9 15 15 C 1.53005 * 109.47326 * 155.00326 * 12 11 9 16 16 C 1.52998 * 109.46795 * 294.99979 * 15 12 11 17 17 C 1.53002 * 109.47202 * 180.02562 * 16 15 12 18 18 N 1.46499 * 109.47202 * 180.02562 * 17 16 15 19 19 C 1.36943 * 119.99783 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99813 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46986 * 59.99750 * 23 21 19 25 25 H 1.48500 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46992 * 299.99508 * 23 21 19 27 27 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47356 * 90.02321 * 7 6 5 36 36 H 1.09003 * 109.47102 * 210.02441 * 7 6 5 37 37 H 1.08999 * 109.46901 * 330.02574 * 7 6 5 38 38 H 0.96997 * 120.00082 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47150 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47231 * 300.00230 * 14 12 11 41 41 H 1.09002 * 109.46941 * 60.00103 * 14 12 11 42 42 H 1.08995 * 109.47045 * 55.00040 * 15 12 11 43 43 H 1.09003 * 109.47045 * 175.00180 * 15 12 11 44 44 H 1.09012 * 109.47168 * 300.00111 * 16 15 12 45 45 H 1.08996 * 109.47488 * 60.00086 * 16 15 12 46 46 H 1.09003 * 109.46275 * 299.99895 * 17 16 15 47 47 H 1.08996 * 109.47102 * 59.99515 * 17 16 15 48 48 H 0.96999 * 119.99877 * 359.97438 * 18 17 16 49 49 H 0.97006 * 119.99621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0638 6 6 5.5837 1.4437 -0.8948 7 6 6.5588 1.4450 -2.0438 8 6 5.9753 1.4430 0.4041 9 6 7.3592 1.4439 0.8902 10 8 8.2825 1.4449 0.0976 11 7 7.6082 1.4435 2.2148 12 6 8.9904 1.4438 2.7003 13 1 9.6120 2.0337 2.0267 14 6 9.5138 0.0070 2.7503 15 6 9.0381 2.0530 4.1031 16 6 8.6333 3.5268 4.0330 17 6 8.6816 4.1361 5.4356 18 7 8.2935 5.5472 5.3687 19 6 8.2624 6.3036 6.5098 20 1 8.5236 5.8598 7.4591 21 6 7.8941 7.6405 6.4465 22 7 7.5753 8.1811 5.2895 23 14 7.8510 8.6722 8.0031 24 1 9.2037 8.7012 8.6153 25 1 7.4299 10.0563 7.6681 26 1 6.8857 8.0793 8.9632 27 16 4.5233 1.4492 1.4026 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 6.7938 2.4729 -2.3198 36 1 7.4726 0.9310 -1.7454 37 1 6.1154 0.9319 -2.8971 38 1 6.8723 1.4423 2.8466 39 1 10.5423 0.0073 3.1111 40 1 8.8922 -0.5829 3.4238 41 1 9.4798 -0.4270 1.7509 42 1 8.3484 1.5173 4.7554 43 1 10.0501 1.9725 4.4999 44 1 9.3231 4.0624 3.3806 45 1 7.6214 3.6072 3.6363 46 1 7.9921 3.6006 6.0883 47 1 9.6938 4.0557 5.8321 48 1 8.0585 5.9456 4.5161 49 1 7.3183 9.1155 5.2452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506951891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = -15.122368 kcal Electronic energy + Delta-G solvation = -26516.246076 eV Core-core repulsion = 22797.266501 eV Total energy + Delta-G solvation = -3718.979575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62405 -39.50924 -36.83067 -35.66413 -34.85937 -32.70785 -32.04267 -31.22795 -29.46617 -28.53206 -28.16347 -25.68211 -23.71831 -23.27257 -22.34504 -21.72388 -20.86523 -20.73880 -19.70861 -18.21688 -17.11092 -16.98077 -16.32443 -15.72007 -15.45146 -15.12005 -14.74059 -14.63824 -14.40762 -14.10331 -13.92623 -13.82149 -13.62098 -13.45191 -13.02053 -12.80703 -12.71319 -12.56984 -12.54624 -12.20647 -12.11142 -12.03132 -11.65764 -11.54136 -11.33163 -11.20282 -11.19272 -10.84660 -10.81526 -10.49193 -10.42266 -10.21439 -10.03481 -9.86248 -9.74591 -9.67972 -9.22997 -8.92786 -8.85666 -6.90998 -5.75153 -3.04070 0.00276 0.91752 1.32683 2.21556 2.95906 3.02671 3.44228 3.48235 3.49722 3.64527 4.41418 4.52668 4.53421 4.56995 4.61852 4.76125 4.89694 5.00062 5.02808 5.09780 5.12074 5.25084 5.33701 5.39945 5.51049 5.52417 5.55912 5.57993 5.60262 5.64817 5.65719 5.73403 5.75965 5.82728 5.92911 6.04155 6.06577 6.15772 6.20110 6.34800 6.40100 6.41276 6.86030 6.89442 7.25819 7.41599 7.69821 8.00385 8.43841 9.54436 10.13494 10.47803 11.47746 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.002553 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.534667 B =10963.001814 C =12800.809186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.049 4.049 4 C 0.068 3.932 5 N -0.477 5.477 6 C 0.151 3.849 7 C -0.089 4.089 8 C -0.302 4.302 9 C 0.600 3.400 10 O -0.525 6.525 11 N -0.715 5.715 12 C 0.142 3.858 13 H 0.093 0.907 14 C -0.162 4.162 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 S 0.165 5.835 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -21.510 -11.940 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.090 4.090 4 C -0.208 4.208 5 N -0.192 5.192 6 C 0.013 3.987 7 C -0.148 4.148 8 C -0.426 4.426 9 C 0.386 3.614 10 O -0.403 6.403 11 N -0.366 5.366 12 C 0.038 3.962 13 H 0.111 0.889 14 C -0.221 4.221 15 C -0.162 4.162 16 C -0.164 4.164 17 C 0.026 3.974 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 S 0.423 5.577 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.174 -21.426 -11.695 26.077 hybrid contribution 0.005 0.890 0.277 0.932 sum -9.169 -20.536 -11.418 25.223 Atomic orbital electron populations 1.21763 0.94693 1.02193 1.02280 1.21537 0.96499 0.94698 1.02980 1.20454 0.84371 0.99192 1.04961 1.27400 1.01769 1.00453 0.91135 1.66088 1.04385 1.17497 1.31239 1.20676 0.89876 0.94478 0.93696 1.20668 0.96865 1.03871 0.93421 1.25469 0.98005 1.21851 0.97289 1.16628 0.85905 0.76232 0.82635 1.90775 1.44325 1.50400 1.54830 1.46004 1.09532 1.75019 1.06080 1.21114 0.81807 0.96866 0.96391 0.88936 1.22179 1.01407 0.96200 1.02276 1.21866 1.03082 0.96619 0.94620 1.21743 1.01620 0.93929 0.99138 1.20642 0.96942 0.86537 0.93317 1.42377 1.81933 1.05316 1.08227 1.19195 1.38350 0.91869 0.87730 0.91266 1.24756 1.02427 0.97064 0.96854 1.69659 1.52506 1.12979 1.23133 0.86258 0.77740 0.79575 0.82559 1.21260 1.21666 1.21275 1.83959 0.96416 1.65990 1.11330 0.92316 0.92310 0.92245 0.91560 0.91155 0.88290 0.89071 0.89963 0.88162 0.90861 0.76764 0.91309 0.92499 0.92229 0.91391 0.89994 0.91847 0.92183 0.96584 0.96454 0.78337 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 3 C -0.05 -0.34 5.79 -27.89 -0.16 -0.51 16 4 C 0.07 0.69 6.64 -13.29 -0.09 0.60 16 5 N -0.48 -5.81 10.50 -7.70 -0.08 -5.89 16 6 C 0.15 1.92 6.79 -83.89 -0.57 1.35 16 7 C -0.09 -1.01 9.69 36.01 0.35 -0.66 16 8 C -0.30 -3.80 6.48 -37.10 -0.24 -4.04 16 9 C 0.60 8.15 7.74 -12.85 -0.10 8.05 16 10 O -0.52 -8.25 13.93 5.20 0.07 -8.18 16 11 N -0.72 -8.43 4.53 -55.12 -0.25 -8.68 16 12 C 0.14 1.64 2.57 -67.93 -0.17 1.46 16 13 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 14 C -0.16 -1.59 9.48 37.16 0.35 -1.23 16 15 C -0.12 -1.46 4.75 -26.73 -0.13 -1.58 16 16 C -0.13 -2.01 5.22 -26.73 -0.14 -2.15 16 17 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 18 N -0.73 -19.10 5.60 -59.91 -0.34 -19.43 16 19 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 23 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 S 0.16 1.64 22.31 -107.50 -2.40 -0.75 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.22 6.01 -51.93 -0.31 0.90 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 4.16 7.79 -40.82 -0.32 3.84 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 45 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -33.62 414.89 -10.47 -44.09 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.47 Total: 7.48 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.96 Total: -4.44 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.06 Total: -62.05 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.07 Total: -8.18 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.40 Total: -0.75 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.62 -10.47 -44.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.971 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds