Wall clock time and date at job start Tue Mar 31 2020 23:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80223 * 90.02070 * 4 3 2 6 6 C 1.30943 * 117.36258 * 179.97438 * 5 4 3 7 7 C 1.50699 * 122.90461 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19380 * 0.02562 * 6 5 4 9 9 C 1.46675 * 126.13200 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99989 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00034 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00248 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47245 * 34.99805 * 12 11 9 14 14 C 1.53003 * 109.47343 * 275.00050 * 12 11 9 15 15 C 1.53005 * 109.47326 * 155.00326 * 12 11 9 16 16 C 1.52998 * 109.46795 * 294.99979 * 15 12 11 17 17 C 1.53002 * 109.47202 * 180.02562 * 16 15 12 18 18 N 1.46499 * 109.47202 * 180.02562 * 17 16 15 19 19 C 1.36943 * 119.99783 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99813 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46986 * 59.99750 * 23 21 19 25 25 H 1.48500 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46992 * 299.99508 * 23 21 19 27 27 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47356 * 90.02321 * 7 6 5 36 36 H 1.09003 * 109.47102 * 210.02441 * 7 6 5 37 37 H 1.08999 * 109.46901 * 330.02574 * 7 6 5 38 38 H 0.96997 * 120.00082 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47150 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47231 * 300.00230 * 14 12 11 41 41 H 1.09002 * 109.46941 * 60.00103 * 14 12 11 42 42 H 1.08995 * 109.47045 * 55.00040 * 15 12 11 43 43 H 1.09003 * 109.47045 * 175.00180 * 15 12 11 44 44 H 1.09012 * 109.47168 * 300.00111 * 16 15 12 45 45 H 1.08996 * 109.47488 * 60.00086 * 16 15 12 46 46 H 1.09003 * 109.46275 * 299.99895 * 17 16 15 47 47 H 1.08996 * 109.47102 * 59.99515 * 17 16 15 48 48 H 0.96999 * 119.99877 * 359.97438 * 18 17 16 49 49 H 0.97006 * 119.99621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0638 6 6 5.5837 1.4437 -0.8948 7 6 6.5588 1.4450 -2.0438 8 6 5.9753 1.4430 0.4041 9 6 7.3592 1.4439 0.8902 10 8 8.2825 1.4449 0.0976 11 7 7.6082 1.4435 2.2148 12 6 8.9904 1.4438 2.7003 13 1 9.6120 2.0337 2.0267 14 6 9.5138 0.0070 2.7503 15 6 9.0381 2.0530 4.1031 16 6 8.6333 3.5268 4.0330 17 6 8.6816 4.1361 5.4356 18 7 8.2935 5.5472 5.3687 19 6 8.2624 6.3036 6.5098 20 1 8.5236 5.8598 7.4591 21 6 7.8941 7.6405 6.4465 22 7 7.5753 8.1811 5.2895 23 14 7.8510 8.6722 8.0031 24 1 9.2037 8.7012 8.6153 25 1 7.4299 10.0563 7.6681 26 1 6.8857 8.0793 8.9632 27 16 4.5233 1.4492 1.4026 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 6.7938 2.4729 -2.3198 36 1 7.4726 0.9310 -1.7454 37 1 6.1154 0.9319 -2.8971 38 1 6.8723 1.4423 2.8466 39 1 10.5423 0.0073 3.1111 40 1 8.8922 -0.5829 3.4238 41 1 9.4798 -0.4270 1.7509 42 1 8.3484 1.5173 4.7554 43 1 10.0501 1.9725 4.4999 44 1 9.3231 4.0624 3.3806 45 1 7.6214 3.6072 3.6363 46 1 7.9921 3.6006 6.0883 47 1 9.6938 4.0557 5.8321 48 1 8.0585 5.9456 4.5161 49 1 7.3183 9.1155 5.2452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506951891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:47 Heat of formation + Delta-G solvation = -36.184957 kcal Electronic energy + Delta-G solvation = -26517.159419 eV Core-core repulsion = 22797.266501 eV Total energy + Delta-G solvation = -3719.892918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55678 -40.46851 -38.00520 -36.56939 -36.21940 -34.25495 -33.01832 -32.52107 -30.96576 -29.24850 -28.97528 -27.24027 -24.92727 -24.37915 -23.53282 -22.35048 -22.27571 -21.74292 -20.64395 -19.12901 -19.08700 -17.99611 -17.30400 -16.69576 -16.62866 -16.11963 -15.92880 -15.73926 -15.54682 -15.31378 -15.24164 -14.94585 -14.73314 -14.49641 -14.25760 -13.86451 -13.65820 -13.44115 -13.35262 -13.16985 -13.04122 -13.00657 -12.74161 -12.59574 -12.42841 -12.41407 -12.29612 -12.13019 -12.10306 -11.87185 -11.74427 -11.66799 -11.52347 -11.18326 -10.92894 -10.78013 -10.63793 -10.20423 -9.78631 -9.01496 -7.96059 -5.25728 -0.87806 0.08197 0.46162 1.29547 1.46476 1.50140 1.56353 1.99244 2.04469 2.55519 2.88641 3.37465 3.56318 3.71898 3.73678 3.93577 4.01252 4.04267 4.07345 4.08187 4.26971 4.38403 4.43982 4.56480 4.63001 4.63123 4.64932 4.71064 4.77489 4.81054 4.84090 4.84629 4.88711 4.92273 4.97922 5.09309 5.18615 5.22363 5.27100 5.30241 5.34779 5.41127 5.43252 5.49243 5.50626 6.26091 6.30956 6.53306 7.01144 7.31546 8.08678 8.30716 9.27566 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.002553 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.534667 B =10963.001814 C =12800.809186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.050 4.050 4 C 0.070 3.930 5 N -0.499 5.499 6 C 0.140 3.860 7 C -0.086 4.086 8 C -0.330 4.330 9 C 0.597 3.403 10 O -0.555 6.555 11 N -0.709 5.709 12 C 0.144 3.856 13 H 0.072 0.928 14 C -0.154 4.154 15 C -0.110 4.110 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.751 5.751 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.275 1.275 27 S 0.202 5.798 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.026 0.974 47 H 0.022 0.978 48 H 0.371 0.629 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 -22.768 -10.258 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.091 4.091 4 C -0.205 4.205 5 N -0.214 5.214 6 C 0.001 3.999 7 C -0.144 4.144 8 C -0.454 4.454 9 C 0.383 3.617 10 O -0.436 6.436 11 N -0.360 5.360 12 C 0.040 3.960 13 H 0.090 0.910 14 C -0.213 4.213 15 C -0.148 4.148 16 C -0.152 4.152 17 C 0.024 3.976 18 N -0.394 5.394 19 C -0.379 4.379 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.201 1.201 27 S 0.461 5.539 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.241 0.759 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.202 0.798 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.074 -22.736 -9.967 26.791 hybrid contribution 0.250 1.229 -0.243 1.277 sum -9.824 -21.507 -10.210 25.755 Atomic orbital electron populations 1.21749 0.93527 1.02677 1.02733 1.21509 0.97410 0.93753 1.02631 1.20663 0.82234 1.00174 1.06038 1.28017 1.03059 0.98533 0.90884 1.66142 1.04222 1.18853 1.32193 1.20906 0.90451 0.94392 0.94143 1.20616 0.96400 1.03705 0.93716 1.25485 0.98588 1.23276 0.98071 1.16816 0.86127 0.75842 0.82899 1.90752 1.45328 1.51899 1.55582 1.45989 1.10004 1.74327 1.05719 1.21091 0.81417 0.97895 0.95605 0.91028 1.22105 1.02543 0.94636 1.01966 1.21779 1.04403 0.93520 0.95140 1.21604 1.01011 0.96385 0.96211 1.20855 0.96908 0.83878 0.95943 1.42657 1.82088 1.07537 1.07069 1.19645 1.37086 0.92417 0.88789 0.90431 1.25639 1.02942 0.98489 1.00028 1.69830 1.54144 1.12949 1.25376 0.85170 0.78119 0.77360 0.78872 1.20321 1.22193 1.20055 1.83725 0.94644 1.65264 1.10285 0.91613 0.92124 0.91777 0.91252 0.92209 0.87912 0.87259 0.90201 0.89244 0.89542 0.75905 0.89804 0.90963 0.93578 0.89382 0.88491 0.93416 0.92845 0.95581 0.96032 0.79778 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.11 -1.19 5.92 30.59 0.18 -1.01 16 3 C -0.05 -0.63 5.79 29.85 0.17 -0.45 16 4 C 0.07 1.35 6.64 88.46 0.59 1.93 16 5 N -0.50 -12.03 10.50 -178.28 -1.87 -13.91 16 6 C 0.14 3.61 6.79 42.09 0.29 3.90 16 7 C -0.09 -2.01 9.69 71.24 0.69 -1.32 16 8 C -0.33 -8.35 6.48 23.88 0.15 -8.19 16 9 C 0.60 16.42 7.74 86.45 0.67 17.09 16 10 O -0.55 -18.09 13.93 -4.31 -0.06 -18.15 16 11 N -0.71 -16.28 4.53 -446.51 -2.02 -18.30 16 12 C 0.14 3.16 2.57 44.99 0.12 3.27 16 13 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 14 C -0.15 -2.73 9.48 71.98 0.68 -2.05 16 15 C -0.11 -2.36 4.75 30.60 0.15 -2.21 16 16 C -0.11 -3.54 5.22 30.59 0.16 -3.38 16 17 C 0.15 5.87 6.26 86.38 0.54 6.41 16 18 N -0.75 -39.04 5.60 -343.45 -1.92 -40.97 16 19 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 22 N -0.97 -60.65 13.06 21.65 0.28 -60.36 16 23 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 27 S 0.20 3.82 22.31 -56.49 -1.26 2.56 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.30 6.01 -2.39 -0.01 2.28 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.41 7.95 7.79 -92.71 -0.72 7.23 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 45 H 0.05 1.72 7.75 -2.39 -0.02 1.70 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.37 20.74 7.67 -92.71 -0.71 20.03 16 49 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -72.64 414.89 1.09 -71.54 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.49 Total: 33.04 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.41 Total: -3.78 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.53 Total: -133.54 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.06 Total: -18.15 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.26 Total: 2.56 kcal Total: -72.64 1.09 -71.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.360 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds