Wall clock time and date at job start Tue Mar 31 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47132 * 2 1 4 4 N 1.29027 * 124.91805 * 89.99900 * 3 2 1 5 5 C 1.31775 * 117.12161 * 180.02562 * 4 3 2 6 6 C 1.50705 * 122.74910 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47265 * 305.02709 * 6 5 4 8 8 O 1.21288 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00393 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00230 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47150 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47352 * 305.00326 * 12 11 10 14 14 N 1.46506 * 109.47091 * 64.99957 * 12 11 10 15 15 C 1.36939 * 120.00073 * 204.72442 * 14 12 11 16 16 H 1.08004 * 119.99859 * 0.02562 * 15 14 12 17 17 C 1.38805 * 119.99849 * 180.02562 * 15 14 12 18 18 N 1.31625 * 120.00056 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00155 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46896 * 90.00225 * 19 17 15 21 21 H 1.48501 * 109.47275 * 210.00265 * 19 17 15 22 22 H 1.48499 * 109.47039 * 330.00065 * 19 17 15 23 23 C 1.52995 * 109.47197 * 185.00058 * 12 11 10 24 24 C 1.52996 * 109.46992 * 60.00301 * 23 12 11 25 25 C 1.52999 * 109.47197 * 179.97438 * 23 12 11 26 26 C 1.33648 * 114.50477 * 0.22951 * 5 4 3 27 27 S 1.70983 * 124.91185 * 270.00177 * 3 2 1 28 28 H 1.09006 * 109.47112 * 299.99992 * 1 2 3 29 29 H 1.08990 * 109.47074 * 60.00471 * 1 2 3 30 30 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47394 * 239.99943 * 2 1 3 32 32 H 1.09007 * 109.47334 * 119.99564 * 2 1 3 33 33 H 1.08997 * 109.47499 * 185.02292 * 6 5 4 34 34 H 1.09004 * 109.46733 * 65.02186 * 6 5 4 35 35 H 0.97005 * 119.99401 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.47104 * 60.00513 * 10 9 7 37 37 H 1.09000 * 109.47564 * 300.00315 * 10 9 7 38 38 H 1.08996 * 109.46681 * 60.00306 * 11 10 9 39 39 H 1.09004 * 109.47038 * 300.00156 * 11 10 9 40 40 H 0.97005 * 119.99811 * 25.00235 * 14 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47379 * 300.00069 * 23 12 11 43 43 H 1.09001 * 109.47741 * 59.99690 * 24 23 12 44 44 H 1.09008 * 109.47401 * 180.02562 * 24 23 12 45 45 H 1.08997 * 109.47320 * 299.99619 * 24 23 12 46 46 H 1.09002 * 109.47121 * 60.00047 * 25 23 12 47 47 H 1.09005 * 109.47224 * 179.97438 * 25 23 12 48 48 H 1.09005 * 109.47352 * 300.00268 * 25 23 12 49 49 H 1.08000 * 126.03865 * 179.76993 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7132 3.3483 0.8792 6 6 3.0391 4.2721 2.0244 7 6 1.8443 4.3831 2.9360 8 8 0.8279 3.7726 2.6807 9 7 1.9051 5.1608 4.0350 10 6 0.7434 5.2692 4.9209 11 6 1.0747 6.2060 6.0843 12 6 -0.1383 6.3187 7.0098 13 1 -1.0079 6.6332 6.4326 14 7 -0.4058 5.0163 7.6251 15 6 -1.6664 4.7132 8.0659 16 1 -2.4635 5.4342 7.9597 17 6 -1.9196 3.4794 8.6493 18 7 -3.1311 3.1882 9.0735 19 14 -0.5411 2.2322 8.8324 20 1 0.1370 2.4320 10.1383 21 1 -1.1042 0.8594 8.7720 22 1 0.4399 2.4136 7.7324 23 6 0.1483 7.3499 8.1031 24 6 0.4275 8.7101 7.4605 25 6 -1.0650 7.4631 9.0282 26 6 2.8363 3.7123 -0.4008 27 16 2.3585 2.3435 -1.4021 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.2920 5.2583 1.6351 34 1 3.8863 3.8737 2.5828 35 1 2.7179 5.6495 4.2390 36 1 0.4899 4.2830 5.3099 37 1 -0.1035 5.6681 4.3625 38 1 1.3285 7.1922 5.6956 39 1 1.9215 5.8066 6.6426 40 1 0.3110 4.3701 7.7238 41 1 -3.3081 2.3259 9.4809 42 1 1.0177 7.0354 8.6803 43 1 -0.4419 9.0247 6.8832 44 1 0.6322 9.4448 8.2394 45 1 1.2918 8.6299 6.8012 46 1 -1.2645 6.4941 9.4860 47 1 -0.8606 8.1975 9.8074 48 1 -1.9343 7.7778 8.4507 49 1 3.1714 4.6747 -0.7583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506993650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:01 Heat of formation + Delta-G solvation = -0.465253 kcal Electronic energy + Delta-G solvation = -27040.990868 eV Core-core repulsion = 23322.646873 eV Total energy + Delta-G solvation = -3718.343995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41261 -39.06428 -37.55398 -34.73267 -34.41912 -33.05052 -31.79276 -31.03178 -29.89375 -28.29301 -26.36722 -25.65655 -25.12075 -22.71520 -22.13264 -21.11944 -20.56859 -19.82637 -19.39379 -17.97594 -17.44235 -16.81778 -15.99938 -15.58439 -15.40910 -15.05418 -14.78724 -14.55046 -14.03457 -14.00942 -13.83711 -13.78476 -13.46737 -13.16330 -13.11813 -12.69668 -12.45187 -12.31801 -12.19732 -11.84705 -11.76987 -11.64337 -11.59377 -11.31896 -11.30101 -11.01018 -10.82410 -10.69294 -10.41012 -10.22413 -10.08053 -9.95191 -9.73464 -9.64363 -9.50367 -9.39085 -8.91241 -8.83519 -8.79928 -7.20922 -5.71772 -3.06257 0.54098 1.19211 1.54217 2.59965 2.80075 3.39524 3.42101 3.45878 3.50837 3.82378 4.51661 4.64476 4.79262 4.84623 4.93487 4.99657 5.02653 5.14285 5.16436 5.17508 5.33519 5.42567 5.48515 5.51372 5.62163 5.62329 5.65976 5.77740 5.82112 5.92634 5.93401 6.03922 6.08843 6.16673 6.24192 6.34619 6.39160 6.52158 6.57297 6.66687 6.69155 6.79520 7.07043 7.38924 7.61878 7.68165 8.04817 8.39895 8.47037 9.25549 9.98280 10.17511 11.46388 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.002690 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.060595 B =10407.247565 C =12205.089852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.060 3.940 4 N -0.444 5.444 5 C 0.092 3.908 6 C -0.068 4.068 7 C 0.510 3.490 8 O -0.517 6.517 9 N -0.733 5.733 10 C 0.123 3.877 11 C -0.139 4.139 12 C 0.190 3.810 13 H 0.057 0.943 14 N -0.746 5.746 15 C -0.235 4.235 16 H 0.093 0.907 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.880 3.120 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.110 4.110 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.261 4.261 27 S 0.103 5.897 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.360 0.640 41 H 0.258 0.742 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.029 0.971 48 H 0.042 0.958 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.689 3.310 -20.108 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.219 4.219 4 N -0.157 5.157 5 C -0.040 4.040 6 C -0.110 4.110 7 C 0.295 3.705 8 O -0.391 6.391 9 N -0.385 5.385 10 C 0.000 4.000 11 C -0.177 4.177 12 C 0.080 3.920 13 H 0.075 0.925 14 N -0.389 5.389 15 C -0.365 4.365 16 H 0.111 0.889 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.711 3.289 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.204 1.204 23 C -0.132 4.132 24 C -0.204 4.204 25 C -0.198 4.198 26 C -0.400 4.400 27 S 0.358 5.642 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.193 0.807 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 15.512 2.403 -20.824 26.078 hybrid contribution 1.549 0.000 1.079 1.888 sum 17.061 2.403 -19.745 26.206 Atomic orbital electron populations 1.21776 0.93206 1.02579 1.03133 1.20235 0.97054 0.87427 1.04036 1.27103 1.02677 1.01754 0.90405 1.65989 1.12903 1.05629 1.31185 1.19565 1.00124 0.91357 0.93002 1.20248 0.98300 0.98902 0.93586 1.20228 0.89332 0.79388 0.81589 1.90774 1.32085 1.43636 1.72590 1.46079 1.17591 1.49082 1.25783 1.21410 0.87093 1.01547 0.89936 1.22171 1.00227 0.98941 0.96376 1.20164 0.94318 0.86442 0.91051 0.92486 1.42824 1.09298 1.13522 1.73215 1.19047 0.86294 0.99907 1.31273 0.88884 1.24641 0.95926 0.97419 1.01085 1.69694 1.19086 1.23039 1.46354 0.86618 0.82528 0.82084 0.77717 1.21303 1.21899 1.20353 1.21741 0.98720 0.94520 0.98195 1.21931 1.00763 0.97608 1.00131 1.21843 0.96688 1.03077 0.98209 1.26713 1.13283 1.04342 0.95667 1.83838 1.61080 1.05865 1.13404 0.91329 0.92521 0.91388 0.89837 0.88725 0.87415 0.87291 0.77155 0.90400 0.91662 0.91091 0.91819 0.80729 0.93159 0.92335 0.93108 0.93691 0.93266 0.89261 0.95213 0.93843 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.44 6.52 -27.88 -0.18 -0.62 16 3 C 0.06 0.71 6.64 -13.45 -0.09 0.62 16 4 N -0.44 -6.47 9.68 -8.05 -0.08 -6.54 16 5 C 0.09 1.14 5.64 -84.22 -0.47 0.67 16 6 C -0.07 -0.68 6.19 -29.03 -0.18 -0.86 16 7 C 0.51 7.42 7.80 -10.99 -0.09 7.33 16 8 O -0.52 -10.27 15.45 5.55 0.09 -10.18 16 9 N -0.73 -9.26 5.56 -60.29 -0.33 -9.60 16 10 C 0.12 1.96 5.56 -4.04 -0.02 1.94 16 11 C -0.14 -1.96 4.65 -26.73 -0.12 -2.08 16 12 C 0.19 3.42 2.02 -67.93 -0.14 3.28 16 13 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 14 N -0.75 -16.82 4.26 -53.42 -0.23 -17.05 16 15 C -0.24 -6.39 8.04 -15.06 -0.12 -6.51 16 16 H 0.09 2.71 7.60 -52.48 -0.40 2.31 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 19 Si 0.88 22.49 27.73 -169.99 -4.71 17.77 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 23 C -0.11 -1.81 2.69 -90.62 -0.24 -2.06 16 24 C -0.15 -1.91 8.85 37.16 0.33 -1.59 16 25 C -0.14 -2.61 8.25 37.16 0.31 -2.31 16 26 C -0.26 -2.58 11.07 29.12 0.32 -2.26 16 27 S 0.10 0.97 23.18 -107.50 -2.49 -1.52 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 0.69 8.03 -51.93 -0.42 0.27 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 3.45 8.47 -40.82 -0.35 3.11 16 36 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.82 6.18 -51.93 -0.32 0.50 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.36 8.17 5.66 -40.82 -0.23 7.94 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.05 0.55 6.32 -51.93 -0.33 0.23 16 46 H 0.09 2.00 5.99 -51.93 -0.31 1.68 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -35.66 406.18 -9.56 -45.22 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.26 Total: 9.80 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.43 Total: -5.47 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.13 Total: -61.73 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.66 -9.56 -45.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506993650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.750 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds