Wall clock time and date at job start Tue Mar 31 2020 23:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47132 * 2 1 4 4 N 1.29027 * 124.91805 * 89.99900 * 3 2 1 5 5 C 1.31775 * 117.12161 * 180.02562 * 4 3 2 6 6 C 1.50705 * 122.74910 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47265 * 305.02709 * 6 5 4 8 8 O 1.21288 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00393 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00230 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47150 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47352 * 305.00326 * 12 11 10 14 14 N 1.46506 * 109.47091 * 64.99957 * 12 11 10 15 15 C 1.36939 * 120.00073 * 204.72442 * 14 12 11 16 16 H 1.08004 * 119.99859 * 0.02562 * 15 14 12 17 17 C 1.38805 * 119.99849 * 180.02562 * 15 14 12 18 18 N 1.31625 * 120.00056 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00155 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46896 * 90.00225 * 19 17 15 21 21 H 1.48501 * 109.47275 * 210.00265 * 19 17 15 22 22 H 1.48499 * 109.47039 * 330.00065 * 19 17 15 23 23 C 1.52995 * 109.47197 * 185.00058 * 12 11 10 24 24 C 1.52996 * 109.46992 * 60.00301 * 23 12 11 25 25 C 1.52999 * 109.47197 * 179.97438 * 23 12 11 26 26 C 1.33648 * 114.50477 * 0.22951 * 5 4 3 27 27 S 1.70983 * 124.91185 * 270.00177 * 3 2 1 28 28 H 1.09006 * 109.47112 * 299.99992 * 1 2 3 29 29 H 1.08990 * 109.47074 * 60.00471 * 1 2 3 30 30 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47394 * 239.99943 * 2 1 3 32 32 H 1.09007 * 109.47334 * 119.99564 * 2 1 3 33 33 H 1.08997 * 109.47499 * 185.02292 * 6 5 4 34 34 H 1.09004 * 109.46733 * 65.02186 * 6 5 4 35 35 H 0.97005 * 119.99401 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.47104 * 60.00513 * 10 9 7 37 37 H 1.09000 * 109.47564 * 300.00315 * 10 9 7 38 38 H 1.08996 * 109.46681 * 60.00306 * 11 10 9 39 39 H 1.09004 * 109.47038 * 300.00156 * 11 10 9 40 40 H 0.97005 * 119.99811 * 25.00235 * 14 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47379 * 300.00069 * 23 12 11 43 43 H 1.09001 * 109.47741 * 59.99690 * 24 23 12 44 44 H 1.09008 * 109.47401 * 180.02562 * 24 23 12 45 45 H 1.08997 * 109.47320 * 299.99619 * 24 23 12 46 46 H 1.09002 * 109.47121 * 60.00047 * 25 23 12 47 47 H 1.09005 * 109.47224 * 179.97438 * 25 23 12 48 48 H 1.09005 * 109.47352 * 300.00268 * 25 23 12 49 49 H 1.08000 * 126.03865 * 179.76993 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7132 3.3483 0.8792 6 6 3.0391 4.2721 2.0244 7 6 1.8443 4.3831 2.9360 8 8 0.8279 3.7726 2.6807 9 7 1.9051 5.1608 4.0350 10 6 0.7434 5.2692 4.9209 11 6 1.0747 6.2060 6.0843 12 6 -0.1383 6.3187 7.0098 13 1 -1.0079 6.6332 6.4326 14 7 -0.4058 5.0163 7.6251 15 6 -1.6664 4.7132 8.0659 16 1 -2.4635 5.4342 7.9597 17 6 -1.9196 3.4794 8.6493 18 7 -3.1311 3.1882 9.0735 19 14 -0.5411 2.2322 8.8324 20 1 0.1370 2.4320 10.1383 21 1 -1.1042 0.8594 8.7720 22 1 0.4399 2.4136 7.7324 23 6 0.1483 7.3499 8.1031 24 6 0.4275 8.7101 7.4605 25 6 -1.0650 7.4631 9.0282 26 6 2.8363 3.7123 -0.4008 27 16 2.3585 2.3435 -1.4021 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.2920 5.2583 1.6351 34 1 3.8863 3.8737 2.5828 35 1 2.7179 5.6495 4.2390 36 1 0.4899 4.2830 5.3099 37 1 -0.1035 5.6681 4.3625 38 1 1.3285 7.1922 5.6956 39 1 1.9215 5.8066 6.6426 40 1 0.3110 4.3701 7.7238 41 1 -3.3081 2.3259 9.4809 42 1 1.0177 7.0354 8.6803 43 1 -0.4419 9.0247 6.8832 44 1 0.6322 9.4448 8.2394 45 1 1.2918 8.6299 6.8012 46 1 -1.2645 6.4941 9.4860 47 1 -0.8606 8.1975 9.8074 48 1 -1.9343 7.7778 8.4507 49 1 3.1714 4.6747 -0.7583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506993650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:00 Heat of formation + Delta-G solvation = -26.233816 kcal Electronic energy + Delta-G solvation = -27042.108276 eV Core-core repulsion = 23322.646873 eV Total energy + Delta-G solvation = -3719.461404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32373 -40.14376 -39.02509 -35.97636 -35.23948 -34.93430 -33.08718 -32.42428 -31.32036 -29.19391 -27.66329 -26.87906 -26.24478 -24.43513 -23.10370 -22.47002 -21.64188 -20.92631 -20.62079 -19.44647 -18.80451 -17.85085 -17.09989 -16.97741 -16.48597 -16.26347 -15.91175 -15.71151 -15.38520 -15.22184 -15.14251 -14.96224 -14.62694 -14.50118 -14.30403 -13.96130 -13.83435 -13.48403 -13.24249 -13.01549 -12.97018 -12.91595 -12.67399 -12.59082 -12.49617 -12.36264 -12.20891 -12.06943 -12.01559 -11.85798 -11.72524 -11.42920 -11.26152 -10.95549 -10.79199 -10.50190 -10.30459 -10.05880 -9.64301 -9.22333 -7.97837 -5.27375 -0.23231 0.46352 0.77140 1.33813 1.38095 1.43225 1.71648 1.74208 2.37805 2.49374 3.10782 3.33795 3.63778 3.72408 3.91321 3.99398 4.08817 4.16739 4.18557 4.24497 4.26682 4.35003 4.39204 4.47145 4.49933 4.62534 4.66826 4.74752 4.78457 4.80263 4.89416 4.96278 5.00476 5.02731 5.13163 5.17479 5.21328 5.26245 5.27822 5.35436 5.43481 5.50912 5.68202 5.77659 5.86632 6.26621 6.64855 6.90159 7.13772 7.37835 7.91055 8.07685 9.24211 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.002690 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.060595 B =10407.247565 C =12205.089852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.031 3.969 4 N -0.492 5.492 5 C 0.057 3.943 6 C -0.057 4.057 7 C 0.503 3.497 8 O -0.580 6.580 9 N -0.714 5.714 10 C 0.131 3.869 11 C -0.121 4.121 12 C 0.181 3.819 13 H 0.037 0.963 14 N -0.749 5.749 15 C -0.200 4.200 16 H 0.062 0.938 17 C -0.069 4.069 18 N -0.987 5.987 19 Si 0.943 3.057 20 H -0.276 1.276 21 H -0.306 1.306 22 H -0.261 1.261 23 C -0.104 4.104 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.254 4.254 27 S 0.147 5.853 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.419 0.581 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.253 0.747 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.031 0.969 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.881 5.473 -22.143 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.247 4.247 4 N -0.206 5.206 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.290 3.710 8 O -0.459 6.459 9 N -0.368 5.368 10 C 0.007 3.993 11 C -0.159 4.159 12 C 0.073 3.927 13 H 0.055 0.945 14 N -0.392 5.392 15 C -0.331 4.331 16 H 0.080 0.920 17 C -0.259 4.259 18 N -0.639 5.639 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.233 1.233 22 H -0.186 1.186 23 C -0.125 4.125 24 C -0.196 4.196 25 C -0.196 4.196 26 C -0.393 4.393 27 S 0.402 5.598 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.257 0.743 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.195 0.805 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 19.803 4.640 -22.877 30.611 hybrid contribution 0.190 -0.541 1.612 1.711 sum 19.993 4.099 -21.265 29.474 Atomic orbital electron populations 1.21735 0.93822 1.03299 1.01398 1.20332 0.96451 0.86925 1.05092 1.27453 1.03188 1.02763 0.91339 1.66000 1.14279 1.07219 1.33152 1.19963 1.01593 0.91346 0.94634 1.20351 0.96151 1.01017 0.92372 1.21144 0.89875 0.78066 0.81907 1.90756 1.34874 1.46128 1.74121 1.45842 1.17478 1.48820 1.24685 1.21066 0.88092 0.99309 0.90834 1.22042 0.98463 1.00709 0.94710 1.20451 0.95642 0.84651 0.91980 0.94476 1.42869 1.07497 1.15620 1.73180 1.18976 0.87384 0.98440 1.28329 0.91985 1.25344 0.98143 0.99827 1.02597 1.69866 1.21498 1.23458 1.49120 0.85567 0.79971 0.78767 0.78412 1.20233 1.23327 1.18646 1.21618 0.97592 0.96175 0.97099 1.21857 1.01873 0.95126 1.00788 1.21766 0.97691 1.01018 0.99093 1.27184 1.11463 1.05640 0.95003 1.83592 1.59754 1.04907 1.11509 0.95278 0.91876 0.89450 0.86728 0.89683 0.82914 0.85323 0.74296 0.95061 0.93671 0.86963 0.90068 0.80527 0.93809 0.91614 0.93333 0.92248 0.90392 0.93808 0.92945 0.94969 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.89 71.98 0.71 -2.18 16 2 C -0.05 -0.89 6.52 29.85 0.19 -0.69 16 3 C 0.03 0.72 6.64 88.52 0.59 1.31 16 4 N -0.49 -14.39 9.68 -179.39 -1.74 -16.13 16 5 C 0.06 1.31 5.64 41.53 0.23 1.55 16 6 C -0.06 -0.99 6.19 29.10 0.18 -0.81 16 7 C 0.50 14.06 7.80 87.66 0.68 14.74 16 8 O -0.58 -23.77 15.45 -3.05 -0.05 -23.82 16 9 N -0.71 -16.43 5.56 -463.06 -2.57 -19.00 16 10 C 0.13 4.10 5.56 86.38 0.48 4.58 16 11 C -0.12 -3.06 4.65 30.60 0.14 -2.91 16 12 C 0.18 6.32 2.02 44.99 0.09 6.41 16 13 H 0.04 1.45 8.08 -2.38 -0.02 1.43 16 14 N -0.75 -34.03 4.26 -322.93 -1.38 -35.41 16 15 C -0.20 -11.30 8.04 84.03 0.68 -10.62 16 16 H 0.06 3.84 7.60 -2.91 -0.02 3.82 16 17 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 18 N -0.99 -65.21 13.97 21.65 0.30 -64.91 16 19 Si 0.94 47.98 27.73 68.60 1.90 49.88 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 22 H -0.26 -12.39 6.52 99.48 0.65 -11.74 16 23 C -0.10 -3.17 2.69 -10.80 -0.03 -3.20 16 24 C -0.14 -3.04 8.85 71.98 0.64 -2.40 16 25 C -0.14 -5.11 8.25 71.98 0.59 -4.51 16 26 C -0.25 -4.31 11.07 66.78 0.74 -3.57 16 27 S 0.15 2.48 23.18 -56.49 -1.31 1.17 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.15 1.17 8.03 -2.39 -0.02 1.16 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.42 5.51 8.47 -92.70 -0.79 4.73 16 36 H 0.03 1.27 7.75 -2.38 -0.02 1.25 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.99 6.18 -2.39 -0.01 1.97 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.36 16.21 5.66 -92.70 -0.52 15.69 16 41 H 0.25 16.12 8.31 -92.71 -0.77 15.34 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.08 1.29 6.32 -2.39 -0.02 1.27 16 46 H 0.04 2.00 5.99 -2.39 -0.01 1.99 16 47 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -86.43 406.18 1.14 -85.29 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.42 Total: 28.91 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.39 Total: -6.00 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -5.38 Total: -135.45 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.90 Total: 49.88 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal Total: -86.43 1.14 -85.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506993650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.060 kcal (2) G-P(sol) polarization free energy of solvation -86.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds