Wall clock time and date at job start Tue Mar 31 2020 23:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.52999 * 109.47486 * 120.00458 * 2 1 3 5 5 C 1.50700 * 109.47561 * 174.99714 * 4 2 1 6 6 N 1.28646 * 124.71581 * 89.99846 * 5 4 2 7 7 C 1.33559 * 115.76545 * 179.97438 * 6 5 4 8 8 C 1.47269 * 123.14513 * 180.02562 * 7 6 5 9 9 O 1.21622 * 120.00225 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99400 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99630 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47304 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47082 * 294.99890 * 12 11 10 14 14 N 1.46498 * 109.47009 * 54.99714 * 12 11 10 15 15 C 1.36935 * 120.00239 * 204.99963 * 14 12 11 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72253 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72375 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72186 * 19 17 15 23 23 C 1.52995 * 109.47443 * 174.99839 * 12 11 10 24 24 C 1.53003 * 109.46977 * 60.00215 * 23 12 11 25 25 C 1.52998 * 109.47443 * 180.02562 * 23 12 11 26 26 C 1.35207 * 113.71539 * 0.26570 * 7 6 5 27 27 S 1.70766 * 124.72127 * 269.96456 * 5 4 2 28 28 H 1.08999 * 109.47227 * 299.99400 * 1 2 3 29 29 H 1.08995 * 109.47083 * 59.99581 * 1 2 3 30 30 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46790 * 240.00586 * 2 1 3 32 32 H 1.08996 * 109.47724 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47518 * 300.00743 * 3 2 1 34 34 H 1.09005 * 109.46718 * 60.00542 * 3 2 1 35 35 H 1.09002 * 109.46727 * 54.99798 * 4 2 1 36 36 H 1.09004 * 109.46894 * 295.00083 * 4 2 1 37 37 H 0.96999 * 120.00577 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.47336 * 59.99723 * 11 10 8 39 39 H 1.08993 * 109.47303 * 299.99847 * 11 10 8 40 40 H 0.97004 * 119.99747 * 25.00702 * 14 12 11 41 41 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 23 12 11 43 43 H 1.09003 * 109.47348 * 60.00072 * 24 23 12 44 44 H 1.09004 * 109.47447 * 180.02562 * 24 23 12 45 45 H 1.08999 * 109.47360 * 299.99664 * 24 23 12 46 46 H 1.08994 * 109.47070 * 60.00091 * 25 23 12 47 47 H 1.09003 * 109.47532 * 180.02562 * 25 23 12 48 48 H 1.09003 * 109.47082 * 300.00051 * 25 23 12 49 49 H 1.08004 * 125.58867 * 179.73767 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8295 1.1888 6 7 4.3591 0.0455 1.6596 7 6 5.6569 -0.2318 1.5089 8 6 6.7306 0.6557 1.9867 9 8 7.8949 0.3463 1.8194 10 7 6.4230 1.8107 2.6095 11 6 7.4911 2.6932 3.0854 12 6 6.8757 3.9265 3.7496 13 1 6.3322 4.5074 3.0044 14 7 5.9535 3.5030 4.8062 15 6 4.9274 4.3248 5.1894 16 1 4.7977 5.2851 4.7124 17 6 4.0540 3.9238 6.1910 18 7 4.2089 2.7513 6.7686 19 14 2.6538 5.0446 6.7133 20 1 1.8674 4.3867 7.7875 21 1 3.2080 6.3261 7.2194 22 1 1.7730 5.3121 5.5481 23 6 7.9860 4.7866 4.3562 24 6 8.9490 5.2289 3.2526 25 6 7.3706 6.0196 5.0210 26 6 5.8928 -1.4009 0.8721 27 16 4.3959 -2.1310 0.4867 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6054 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 5.4944 2.0576 2.7426 38 1 8.1078 3.0048 2.2422 39 1 8.1076 2.1601 3.8089 40 1 6.0699 2.6405 5.2345 41 1 4.9357 2.1691 6.4972 42 1 8.5295 4.2058 5.1014 43 1 8.4056 5.8098 2.5074 44 1 9.7404 5.8414 3.6848 45 1 9.3876 4.3504 2.7794 46 1 6.6848 5.7041 5.8072 47 1 8.1617 6.6326 5.4528 48 1 6.8268 6.6006 4.2761 49 1 6.8673 -1.8080 0.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568471028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:46 Heat of formation + Delta-G solvation = -10.420204 kcal Electronic energy + Delta-G solvation = -27910.270019 eV Core-core repulsion = 24191.494345 eV Total energy + Delta-G solvation = -3718.775674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43819 -38.77279 -37.28942 -36.39069 -33.91009 -33.39530 -31.21412 -30.22551 -28.15888 -27.90353 -27.20671 -26.17758 -24.99137 -23.35511 -22.13424 -21.24556 -20.30547 -19.85815 -19.31142 -18.41081 -17.39453 -16.59441 -15.80746 -15.51454 -15.43011 -14.95915 -14.65553 -14.46024 -14.17050 -13.97419 -13.67455 -13.58126 -13.57589 -13.30669 -12.88580 -12.48566 -12.30879 -12.21845 -12.03625 -11.98202 -11.92513 -11.64361 -11.27565 -11.18208 -11.05838 -10.91257 -10.86518 -10.76809 -10.42004 -10.14504 -10.06235 -9.93266 -9.85699 -9.75659 -9.67632 -9.17559 -8.99485 -8.88177 -8.60458 -7.05278 -6.08224 -3.09236 0.48389 1.15461 1.54053 2.05136 3.49452 3.51048 3.53676 3.56062 3.71078 3.95558 4.63273 4.65846 4.69952 4.75014 5.07777 5.16410 5.24676 5.29418 5.34184 5.36044 5.43879 5.53417 5.56159 5.60632 5.68391 5.74909 5.77728 5.82364 5.84285 5.89594 5.95658 6.00856 6.13260 6.16500 6.18873 6.33317 6.34029 6.39519 6.50000 6.58894 6.63732 6.86354 7.02797 7.28801 7.42601 7.81759 7.94335 8.47156 8.75484 9.20417 10.07377 10.22225 11.38841 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008648 B = 0.003962 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.806276 B = 7064.559579 C = 9190.195389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.043 4.043 5 C 0.038 3.962 6 N -0.429 5.429 7 C 0.018 3.982 8 C 0.587 3.413 9 O -0.550 6.550 10 N -0.692 5.692 11 C 0.111 3.889 12 C 0.176 3.824 13 H 0.054 0.946 14 N -0.731 5.731 15 C -0.325 4.325 16 H 0.067 0.933 17 C -0.042 4.042 18 N -0.941 5.941 19 Si 1.075 2.925 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.231 4.231 27 S 0.188 5.812 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.419 0.581 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.368 0.632 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.031 0.969 48 H 0.040 0.960 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -7.495 -15.394 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.084 4.084 5 C -0.242 4.242 6 N -0.144 5.144 7 C -0.117 4.117 8 C 0.370 3.630 9 O -0.430 6.430 10 N -0.343 5.343 11 C -0.014 4.014 12 C 0.066 3.934 13 H 0.072 0.928 14 N -0.374 5.374 15 C -0.456 4.456 16 H 0.085 0.915 17 C -0.240 4.240 18 N -0.586 5.586 19 Si 0.906 3.094 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.130 4.130 24 C -0.207 4.207 25 C -0.195 4.195 26 C -0.373 4.373 27 S 0.446 5.554 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.489 -7.747 -14.764 17.034 hybrid contribution 1.872 0.377 -0.454 1.963 sum -1.617 -7.369 -15.218 16.986 Atomic orbital electron populations 1.21833 0.94345 1.01801 1.02439 1.21100 0.96032 0.97121 0.96549 1.21861 1.01756 0.95018 1.01989 1.20463 0.84531 1.02371 1.00992 1.27118 1.01587 0.94103 1.01367 1.66989 1.00612 1.28954 1.17863 1.20514 0.90837 0.96262 1.04071 1.17091 0.86592 0.81018 0.78274 1.90770 1.18993 1.74486 1.58702 1.45861 1.12238 1.19809 1.56399 1.21835 0.89612 0.91507 0.98435 1.20466 0.90461 0.91586 0.90888 0.92762 1.42449 1.32112 1.20409 1.42404 1.19957 1.06388 1.00185 1.19060 0.91546 1.25657 1.02000 1.00083 0.96252 1.70870 1.33582 1.09572 1.44595 0.83314 0.75750 0.74305 0.76043 1.21190 1.22333 1.22335 1.21715 0.96409 0.97817 0.97086 1.21942 0.99088 1.00636 0.99021 1.21809 1.00092 0.95958 1.01659 1.26519 1.05111 0.99873 1.05754 1.82706 0.95110 1.24047 1.53575 0.92048 0.92355 0.92610 0.91252 0.92296 0.92966 0.91821 0.89552 0.88030 0.74250 0.91302 0.91821 0.79893 0.93355 0.92074 0.93138 0.93473 0.93071 0.89439 0.95020 0.94045 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.80 2.91 -90.62 -0.26 -1.07 16 3 C -0.15 -1.67 8.99 37.16 0.33 -1.34 16 4 C -0.04 -0.43 5.26 -27.88 -0.15 -0.58 16 5 C 0.04 0.48 5.84 -13.61 -0.08 0.40 16 6 N -0.43 -6.74 9.34 -8.51 -0.08 -6.82 16 7 C 0.02 0.30 6.70 -84.52 -0.57 -0.27 16 8 C 0.59 10.88 7.80 -12.59 -0.10 10.78 16 9 O -0.55 -11.14 16.71 5.26 0.09 -11.06 16 10 N -0.69 -12.85 5.38 -61.43 -0.33 -13.18 16 11 C 0.11 1.98 4.73 -4.04 -0.02 1.97 16 12 C 0.18 3.39 2.18 -67.93 -0.15 3.25 16 13 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 14 N -0.73 -17.07 4.44 -53.43 -0.24 -17.31 16 15 C -0.33 -8.46 7.57 -15.06 -0.11 -8.58 16 16 H 0.07 1.72 7.40 -52.48 -0.39 1.33 16 17 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 18 N -0.94 -28.26 13.70 55.49 0.76 -27.50 16 19 Si 1.07 25.28 29.92 -169.99 -5.09 20.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.11 -1.91 2.69 -90.62 -0.24 -2.15 16 24 C -0.15 -2.17 8.84 37.16 0.33 -1.84 16 25 C -0.14 -2.56 8.26 37.16 0.31 -2.26 16 26 C -0.23 -3.03 10.62 29.65 0.31 -2.72 16 27 S 0.19 1.89 22.92 -107.50 -2.46 -0.57 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.77 6.79 -51.93 -0.35 0.42 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.42 8.29 7.66 -40.82 -0.31 7.97 16 38 H 0.07 1.15 6.71 -51.92 -0.35 0.80 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.37 9.23 6.63 -40.82 -0.27 8.96 16 41 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 46 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.19 2.21 8.03 -52.48 -0.42 1.79 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -30.83 405.43 -9.54 -40.37 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -8.16 Total: 16.22 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.15 Total: -6.45 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.11 Total: -64.81 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.46 Total: -0.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.83 -9.54 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568471028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.952 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds