Wall clock time and date at job start Tue Mar 31 2020 23:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.52999 * 109.47486 * 120.00458 * 2 1 3 5 5 C 1.50700 * 109.47561 * 174.99714 * 4 2 1 6 6 N 1.28646 * 124.71581 * 89.99846 * 5 4 2 7 7 C 1.33559 * 115.76545 * 179.97438 * 6 5 4 8 8 C 1.47269 * 123.14513 * 180.02562 * 7 6 5 9 9 O 1.21622 * 120.00225 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99400 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99630 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47304 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47082 * 294.99890 * 12 11 10 14 14 N 1.46498 * 109.47009 * 54.99714 * 12 11 10 15 15 C 1.36935 * 120.00239 * 204.99963 * 14 12 11 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72253 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72375 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72186 * 19 17 15 23 23 C 1.52995 * 109.47443 * 174.99839 * 12 11 10 24 24 C 1.53003 * 109.46977 * 60.00215 * 23 12 11 25 25 C 1.52998 * 109.47443 * 180.02562 * 23 12 11 26 26 C 1.35207 * 113.71539 * 0.26570 * 7 6 5 27 27 S 1.70766 * 124.72127 * 269.96456 * 5 4 2 28 28 H 1.08999 * 109.47227 * 299.99400 * 1 2 3 29 29 H 1.08995 * 109.47083 * 59.99581 * 1 2 3 30 30 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46790 * 240.00586 * 2 1 3 32 32 H 1.08996 * 109.47724 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47518 * 300.00743 * 3 2 1 34 34 H 1.09005 * 109.46718 * 60.00542 * 3 2 1 35 35 H 1.09002 * 109.46727 * 54.99798 * 4 2 1 36 36 H 1.09004 * 109.46894 * 295.00083 * 4 2 1 37 37 H 0.96999 * 120.00577 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.47336 * 59.99723 * 11 10 8 39 39 H 1.08993 * 109.47303 * 299.99847 * 11 10 8 40 40 H 0.97004 * 119.99747 * 25.00702 * 14 12 11 41 41 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 23 12 11 43 43 H 1.09003 * 109.47348 * 60.00072 * 24 23 12 44 44 H 1.09004 * 109.47447 * 180.02562 * 24 23 12 45 45 H 1.08999 * 109.47360 * 299.99664 * 24 23 12 46 46 H 1.08994 * 109.47070 * 60.00091 * 25 23 12 47 47 H 1.09003 * 109.47532 * 180.02562 * 25 23 12 48 48 H 1.09003 * 109.47082 * 300.00051 * 25 23 12 49 49 H 1.08004 * 125.58867 * 179.73767 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8295 1.1888 6 7 4.3591 0.0455 1.6596 7 6 5.6569 -0.2318 1.5089 8 6 6.7306 0.6557 1.9867 9 8 7.8949 0.3463 1.8194 10 7 6.4230 1.8107 2.6095 11 6 7.4911 2.6932 3.0854 12 6 6.8757 3.9265 3.7496 13 1 6.3322 4.5074 3.0044 14 7 5.9535 3.5030 4.8062 15 6 4.9274 4.3248 5.1894 16 1 4.7977 5.2851 4.7124 17 6 4.0540 3.9238 6.1910 18 7 4.2089 2.7513 6.7686 19 14 2.6538 5.0446 6.7133 20 1 1.8674 4.3867 7.7875 21 1 3.2080 6.3261 7.2194 22 1 1.7730 5.3121 5.5481 23 6 7.9860 4.7866 4.3562 24 6 8.9490 5.2289 3.2526 25 6 7.3706 6.0196 5.0210 26 6 5.8928 -1.4009 0.8721 27 16 4.3959 -2.1310 0.4867 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6054 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 5.4944 2.0576 2.7426 38 1 8.1078 3.0048 2.2422 39 1 8.1076 2.1601 3.8089 40 1 6.0699 2.6405 5.2345 41 1 4.9357 2.1691 6.4972 42 1 8.5295 4.2058 5.1014 43 1 8.4056 5.8098 2.5074 44 1 9.7404 5.8414 3.6848 45 1 9.3876 4.3504 2.7794 46 1 6.6848 5.7041 5.8072 47 1 8.1617 6.6326 5.4528 48 1 6.8268 6.6006 4.2761 49 1 6.8673 -1.8080 0.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568471028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:45 Heat of formation + Delta-G solvation = -29.907090 kcal Electronic energy + Delta-G solvation = -27911.115034 eV Core-core repulsion = 24191.494345 eV Total energy + Delta-G solvation = -3719.620689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63021 -40.09026 -38.84972 -37.22823 -35.50342 -35.18600 -32.26132 -31.97282 -29.75106 -28.84725 -27.96954 -27.55641 -26.38125 -25.17302 -23.53754 -22.51012 -21.26093 -21.07291 -20.64271 -19.68432 -19.29868 -17.86686 -17.03767 -16.85937 -16.66816 -16.33603 -16.16347 -15.66936 -15.52684 -15.35335 -15.01563 -14.95392 -14.80704 -14.54466 -14.21755 -13.66166 -13.57774 -13.38393 -13.07495 -13.00671 -12.93105 -12.84885 -12.72798 -12.68527 -12.51304 -12.09226 -12.00321 -11.93770 -11.82842 -11.61974 -11.60684 -11.52961 -11.33593 -11.18074 -10.82915 -10.76703 -10.64175 -10.25330 -9.81524 -9.06681 -8.27877 -5.22456 -0.54301 0.23750 0.54770 0.87164 1.59090 1.68136 1.83485 2.16147 2.25135 2.74009 2.92793 3.47796 3.65113 3.69346 3.78134 3.91444 3.99252 4.04951 4.16776 4.19369 4.21187 4.30458 4.31842 4.52117 4.58920 4.63287 4.71322 4.78289 4.83276 4.83665 4.87525 4.94449 4.95828 5.02688 5.07242 5.11861 5.16529 5.21638 5.25675 5.38906 5.43752 5.48548 5.53997 5.67813 5.71622 6.27479 6.56239 6.58887 7.01835 7.13517 8.03294 8.16682 9.22285 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008648 B = 0.003962 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.806276 B = 7064.559579 C = 9190.195389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.044 4.044 5 C 0.017 3.983 6 N -0.467 5.467 7 C -0.018 4.018 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.697 5.697 11 C 0.119 3.881 12 C 0.179 3.821 13 H 0.050 0.950 14 N -0.738 5.738 15 C -0.303 4.303 16 H 0.069 0.931 17 C -0.103 4.103 18 N -0.978 5.978 19 Si 1.118 2.882 20 H -0.299 1.299 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.237 4.237 27 S 0.300 5.700 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.356 0.644 41 H 0.240 0.760 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -8.045 -17.626 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.262 4.262 6 N -0.182 5.182 7 C -0.153 4.153 8 C 0.369 3.631 9 O -0.456 6.456 10 N -0.346 5.346 11 C -0.005 4.005 12 C 0.070 3.930 13 H 0.068 0.932 14 N -0.380 5.380 15 C -0.434 4.434 16 H 0.087 0.913 17 C -0.294 4.294 18 N -0.626 5.626 19 Si 0.944 3.056 20 H -0.225 1.225 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.126 4.126 24 C -0.198 4.198 25 C -0.190 4.190 26 C -0.380 4.380 27 S 0.558 5.442 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.188 0.812 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.951 -8.273 -17.046 19.355 hybrid contribution 2.062 0.491 0.124 2.124 sum -1.889 -7.782 -16.922 18.721 Atomic orbital electron populations 1.21812 0.92935 1.03048 1.02296 1.21092 0.97087 0.95391 0.96638 1.21840 1.00230 0.96910 1.01517 1.20610 0.83328 1.03965 1.00568 1.27575 1.02544 0.94908 1.01160 1.66956 1.00751 1.30954 1.19582 1.20264 0.90750 0.97383 1.06873 1.17492 0.87098 0.80951 0.77594 1.90729 1.20064 1.75014 1.59832 1.45892 1.11766 1.20304 1.56674 1.21751 0.89470 0.90711 0.98592 1.20597 0.90336 0.92353 0.89670 0.93205 1.42564 1.32584 1.19686 1.43154 1.20179 1.05878 0.99880 1.17474 0.91264 1.26867 1.04636 1.00669 0.97270 1.70985 1.34208 1.10938 1.46517 0.82736 0.73642 0.73324 0.75853 1.22535 1.20643 1.20617 1.21603 0.96198 0.96936 0.97865 1.21852 0.98683 1.01365 0.97908 1.21711 1.00082 0.96585 1.00614 1.26874 1.07689 0.99198 1.04253 1.82246 0.91229 1.20361 1.50358 0.93118 0.91625 0.90658 0.89618 0.94561 0.91790 0.93880 0.86366 0.90228 0.75089 0.89580 0.92857 0.81181 0.94926 0.93110 0.92310 0.91673 0.92274 0.93354 0.92744 0.93633 0.78646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.08 -1.36 2.91 -10.79 -0.03 -1.40 16 3 C -0.15 -3.33 8.99 71.98 0.65 -2.69 16 4 C -0.04 -0.83 5.26 29.85 0.16 -0.67 16 5 C 0.02 0.41 5.84 88.58 0.52 0.93 16 6 N -0.47 -14.99 9.34 -180.84 -1.69 -16.68 16 7 C -0.02 -0.58 6.70 40.56 0.27 -0.31 16 8 C 0.58 22.35 7.80 86.62 0.68 23.02 16 9 O -0.58 -23.78 16.71 -4.10 -0.07 -23.85 16 10 N -0.70 -26.97 5.38 -466.53 -2.51 -29.48 16 11 C 0.12 4.35 4.73 86.38 0.41 4.76 16 12 C 0.18 6.98 2.18 44.99 0.10 7.08 16 13 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 14 N -0.74 -35.69 4.44 -322.95 -1.43 -37.12 16 15 C -0.30 -16.11 7.57 84.03 0.64 -15.47 16 16 H 0.07 3.60 7.40 -2.91 -0.02 3.58 16 17 C -0.10 -5.86 5.50 84.86 0.47 -5.40 16 18 N -0.98 -60.95 13.70 21.65 0.30 -60.65 16 19 Si 1.12 51.81 29.92 68.60 2.05 53.86 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 C -0.10 -3.62 2.69 -10.79 -0.03 -3.65 16 24 C -0.14 -3.77 8.84 71.98 0.64 -3.13 16 25 C -0.13 -4.82 8.26 71.98 0.59 -4.23 16 26 C -0.24 -5.99 10.62 67.12 0.71 -5.28 16 27 S 0.30 5.18 22.92 -56.49 -1.29 3.89 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.04 0.97 6.79 -2.39 -0.02 0.96 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.41 17.22 7.66 -92.71 -0.71 16.51 16 38 H 0.09 2.85 6.71 -2.38 -0.02 2.83 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.36 18.84 6.63 -92.71 -0.61 18.23 16 41 H 0.24 15.16 6.77 -92.71 -0.63 14.54 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 1.50 6.54 -2.39 -0.02 1.49 16 46 H 0.05 2.14 6.01 -2.39 -0.01 2.12 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.20 4.41 8.03 -2.91 -0.02 4.38 16 Total: -1.00 -69.98 405.43 1.54 -68.44 By element: Atomic # 1 Polarization: 49.48 SS G_CDS: -0.23 Total: 49.25 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.42 Total: -7.66 kcal Atomic # 7 Polarization: -138.60 SS G_CDS: -5.34 Total: -143.94 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.07 Total: -23.85 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.29 Total: 3.89 kcal Total: -69.98 1.54 -68.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568471028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.532 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds