Wall clock time and date at job start Tue Mar 31 2020 23:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35725 * 116.99808 * 2 1 4 4 C 1.39349 * 120.36206 * 359.97438 * 3 2 1 5 5 N 1.31292 * 120.88130 * 180.02562 * 4 3 2 6 6 C 1.32890 * 121.71980 * 359.97438 * 5 4 3 7 7 C 1.47763 * 119.68815 * 180.02562 * 6 5 4 8 8 O 1.21564 * 119.99645 * 173.77030 * 7 6 5 9 9 N 1.34774 * 119.99634 * 353.76831 * 7 6 5 10 10 C 1.46498 * 120.00511 * 2.88768 * 9 7 6 11 11 C 1.46498 * 119.99550 * 182.88568 * 9 7 6 12 12 C 1.53002 * 109.47428 * 90.00217 * 11 9 7 13 13 C 1.53002 * 109.47084 * 299.99898 * 12 11 9 14 14 C 1.52998 * 109.46990 * 59.99616 * 12 11 9 15 15 C 1.52995 * 109.47378 * 179.97438 * 12 11 9 16 16 N 1.46502 * 109.47297 * 179.97438 * 15 12 11 17 17 C 1.36932 * 120.00360 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00114 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99912 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46981 * 60.00423 * 21 19 17 23 23 H 1.48500 * 109.47169 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47303 * 300.00384 * 21 19 17 25 25 C 1.39716 * 120.62427 * 0.02562 * 6 5 4 26 26 F 1.35101 * 120.46507 * 180.02562 * 25 6 5 27 27 C 1.38687 * 119.06851 * 359.97438 * 25 6 5 28 28 H 1.09006 * 109.46567 * 60.00080 * 1 2 3 29 29 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47592 * 300.00451 * 1 2 3 31 31 H 1.08001 * 119.56005 * 359.74124 * 4 3 2 32 32 H 1.08998 * 109.47049 * 83.80907 * 10 9 7 33 33 H 1.09000 * 109.47233 * 203.80517 * 10 9 7 34 34 H 1.09005 * 109.46843 * 323.80447 * 10 9 7 35 35 H 1.09009 * 109.47280 * 210.00080 * 11 9 7 36 36 H 1.09001 * 109.47390 * 330.00081 * 11 9 7 37 37 H 1.09011 * 109.46751 * 59.99531 * 13 12 11 38 38 H 1.08996 * 109.47217 * 179.97438 * 13 12 11 39 39 H 1.08993 * 109.47058 * 300.00001 * 13 12 11 40 40 H 1.08999 * 109.46875 * 60.00474 * 14 12 11 41 41 H 1.09008 * 109.47021 * 180.02562 * 14 12 11 42 42 H 1.08995 * 109.47549 * 300.00525 * 14 12 11 43 43 H 1.08999 * 109.47383 * 300.00075 * 15 12 11 44 44 H 1.09005 * 109.46862 * 60.00343 * 15 12 11 45 45 H 0.97007 * 119.99958 * 0.02562 * 16 15 12 46 46 H 0.96999 * 120.00091 * 180.02562 * 20 19 17 47 47 H 1.08003 * 120.78834 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2023 3.6793 -0.0006 7 6 3.8138 5.0245 -0.0006 8 8 5.0180 5.1446 0.1141 9 7 3.0364 6.1181 -0.1278 10 6 1.5802 5.9770 -0.2024 11 6 3.6478 7.4479 -0.1914 12 6 3.9446 7.8036 -1.6496 13 6 4.9067 6.7712 -2.2407 14 6 2.6408 7.8027 -2.4503 15 6 4.5825 9.1926 -1.7161 16 7 4.8672 9.5330 -3.1123 17 6 5.4437 10.7363 -3.4199 18 1 5.6881 11.4348 -2.6332 19 6 5.7130 11.0590 -4.7429 20 7 5.4138 10.2084 -5.7017 21 14 6.4988 12.7009 -5.1625 22 1 7.8200 12.8031 -4.4922 23 1 6.6801 12.8015 -6.6329 24 1 5.6205 13.8036 -4.6959 25 6 4.0209 2.5471 0.0000 26 9 5.3659 2.6742 0.0010 27 6 3.4333 1.2908 0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2151 2.3247 -0.0052 32 1 1.1697 5.9081 0.8050 33 1 1.1566 6.8444 -0.7087 34 1 1.3307 5.0737 -0.7591 35 1 2.9623 8.1835 0.2297 36 1 4.5766 7.4485 0.3790 37 1 4.4518 5.7817 -2.1933 38 1 5.1179 7.0243 -3.2796 39 1 5.8355 6.7717 -1.6703 40 1 1.9554 8.5383 -2.0292 41 1 2.8524 8.0557 -3.4893 42 1 2.1860 6.8134 -2.4030 43 1 3.8967 9.9279 -1.2951 44 1 5.5113 9.1936 -1.1456 45 1 4.6474 8.9058 -3.8189 46 1 5.6024 10.4337 -6.6261 47 1 4.0395 0.3970 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570675743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:02 Heat of formation + Delta-G solvation = -42.312679 kcal Electronic energy + Delta-G solvation = -30261.856053 eV Core-core repulsion = 25975.484242 eV Total energy + Delta-G solvation = -4286.371812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23938 -41.35573 -40.05430 -38.50293 -37.16161 -35.06370 -33.21014 -32.64795 -31.03596 -30.06956 -28.28347 -27.69713 -26.73811 -25.99232 -25.41268 -24.44084 -23.47269 -22.38281 -20.32185 -19.02431 -18.49481 -18.18796 -17.40879 -17.16775 -16.75995 -16.60316 -16.06431 -15.99081 -15.48556 -15.32658 -15.00127 -14.48782 -14.08518 -14.03985 -13.91055 -13.58995 -13.41120 -13.23703 -12.99055 -12.94579 -12.77109 -12.59376 -12.27664 -12.27266 -12.06650 -11.85211 -11.16782 -11.05140 -10.92445 -10.74238 -10.67225 -10.28590 -10.18679 -10.16588 -10.00717 -9.87923 -9.62955 -9.45989 -9.07179 -8.77974 -8.40953 -6.80867 -5.67998 -2.95149 0.14751 0.46810 2.33469 2.48814 2.91295 3.36929 3.49850 3.53773 3.55057 3.65248 3.72567 3.93844 4.19947 4.40990 4.44402 4.52197 4.67479 4.74331 4.89347 5.05252 5.23358 5.26534 5.32303 5.34871 5.51219 5.64575 5.67814 5.77917 5.82121 6.00865 6.05482 6.11312 6.22114 6.25227 6.39363 6.44974 6.53255 6.62683 6.71214 6.82658 6.86664 7.03284 7.06294 7.06910 7.41007 7.77752 8.16059 8.51672 9.62520 10.22455 10.57337 11.55203 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002360 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.773925 B =11859.884433 C =12088.651726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.130 3.870 4 C 0.000 4.000 5 N -0.383 5.383 6 C 0.011 3.989 7 C 0.567 3.433 8 O -0.517 6.517 9 N -0.586 5.586 10 C 0.070 3.930 11 C 0.126 3.874 12 C -0.085 4.085 13 C -0.123 4.123 14 C -0.135 4.135 15 C 0.165 3.835 16 N -0.727 5.727 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.157 3.843 26 F -0.095 7.095 27 C -0.161 4.161 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.173 0.827 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -22.916 14.754 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.081 3.919 4 C -0.161 4.161 5 N -0.095 5.095 6 C -0.128 4.128 7 C 0.353 3.647 8 O -0.392 6.392 9 N -0.317 5.317 10 C -0.073 4.073 11 C 0.003 3.997 12 C -0.087 4.087 13 C -0.181 4.181 14 C -0.193 4.193 15 C 0.037 3.963 16 N -0.373 5.373 17 C -0.366 4.366 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.585 5.585 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 C 0.134 3.866 26 F -0.073 7.073 27 C -0.187 4.187 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.190 0.810 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.507 -22.103 14.828 30.313 hybrid contribution 0.685 0.020 -0.586 0.901 sum -13.822 -22.083 14.242 29.691 Atomic orbital electron populations 1.23275 0.76912 1.05073 1.02190 1.86074 1.22492 1.25526 1.87315 1.20011 0.92048 0.86101 0.93754 1.23235 1.01295 0.86789 1.04808 1.68119 1.09146 1.25147 1.07082 1.21400 0.89409 0.94322 1.07634 1.17458 0.86198 0.82895 0.78162 1.90886 1.13224 1.85616 1.49483 1.47565 1.07611 1.06044 1.70526 1.22507 0.78704 1.03991 1.02093 1.21650 0.99185 0.81592 0.97261 1.21107 0.96412 0.97198 0.93964 1.21713 0.98583 0.96275 1.01519 1.21874 0.96040 0.99961 1.01382 1.20583 0.96104 0.90997 0.88591 1.42384 1.74073 1.19474 1.01337 1.19202 1.31717 0.93911 0.91791 0.91325 1.24716 1.02347 0.98371 0.95736 1.69648 1.53827 1.35719 0.99261 0.86267 0.79239 0.83740 0.76946 1.21344 1.21795 1.21389 1.18222 0.78885 0.92677 0.96784 1.91672 1.27077 1.96390 1.92185 1.20844 0.92948 0.97795 1.07144 0.91715 0.87362 0.91781 0.81011 0.93000 0.91396 0.87809 0.90316 0.89615 0.94634 0.92064 0.92440 0.93214 0.91541 0.93554 0.96442 0.96228 0.78007 0.93585 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.85 10.50 -18.88 -0.20 -2.05 16 3 C 0.13 0.97 6.72 -38.87 -0.26 0.71 16 4 C 0.00 0.00 10.21 -17.37 -0.18 -0.18 16 5 N -0.38 -3.79 5.97 -9.63 -0.06 -3.85 16 6 C 0.01 0.14 6.64 -82.96 -0.55 -0.41 16 7 C 0.57 8.62 5.96 -12.37 -0.07 8.55 16 8 O -0.52 -9.48 13.32 5.31 0.07 -9.41 16 9 N -0.59 -7.99 2.40 -182.72 -0.44 -8.43 16 10 C 0.07 0.73 8.06 59.85 0.48 1.22 16 11 C 0.13 1.86 4.58 -4.04 -0.02 1.84 16 12 C -0.09 -1.50 0.60 -154.51 -0.09 -1.59 16 13 C -0.12 -2.38 7.01 37.16 0.26 -2.12 16 14 C -0.14 -2.24 7.07 37.16 0.26 -1.98 16 15 C 0.17 3.50 5.15 -4.04 -0.02 3.48 16 16 N -0.73 -18.99 5.00 -59.91 -0.30 -19.29 16 17 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.94 -28.99 13.06 55.49 0.72 -28.26 16 21 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C 0.16 1.86 7.30 -38.86 -0.28 1.58 16 26 F -0.10 -1.34 15.56 2.25 0.04 -1.31 16 27 C -0.16 -1.41 10.10 -39.11 -0.40 -1.81 16 28 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 29 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.06 0.07 7.68 -51.93 -0.40 -0.33 16 31 H 0.17 0.62 6.31 -52.49 -0.33 0.29 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16 34 H 0.10 1.06 5.15 -53.67 -0.28 0.79 16 35 H 0.08 1.01 8.07 -51.92 -0.42 0.59 16 36 H 0.09 1.37 7.38 -51.93 -0.38 0.99 16 37 H 0.03 0.65 6.19 -51.92 -0.32 0.33 16 38 H 0.06 1.31 6.86 -51.93 -0.36 0.95 16 39 H 0.06 1.17 7.79 -51.93 -0.40 0.77 16 40 H 0.05 0.76 8.07 -51.93 -0.42 0.35 16 41 H 0.07 1.30 6.86 -51.92 -0.36 0.94 16 42 H 0.05 0.67 6.08 -51.93 -0.32 0.36 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.38 10.52 5.36 -40.82 -0.22 10.31 16 46 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -34.94 373.97 -6.26 -41.20 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.59 Total: 4.91 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.12 Total: 2.84 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.07 Total: -59.84 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.13 Total: -11.46 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.94 -6.26 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570675743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.109 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds