Wall clock time and date at job start Tue Mar 31 2020 22:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29423 * 124.80702 * 2 1 4 4 C 1.30944 * 117.36542 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.90485 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47467 * 90.01574 * 5 4 3 7 7 C 1.53002 * 109.46765 * 65.00046 * 6 5 4 8 8 C 1.53001 * 109.47239 * 185.00074 * 6 5 4 9 9 C 1.35653 * 114.19297 * 359.97438 * 4 3 2 10 10 C 1.46688 * 126.13490 * 180.02562 * 9 4 3 11 11 O 1.21690 * 119.99312 * 350.05078 * 10 9 4 12 12 N 1.34768 * 120.00353 * 170.06074 * 10 9 4 13 13 C 1.46504 * 120.00028 * 0.76843 * 12 10 9 14 14 C 1.46505 * 119.99935 * 180.77060 * 12 10 9 15 15 C 1.53001 * 109.47087 * 89.99854 * 14 12 10 16 16 H 1.09001 * 109.46833 * 295.00020 * 15 14 12 17 17 C 1.52992 * 109.47185 * 175.00073 * 15 14 12 18 18 N 1.46497 * 109.47191 * 54.99816 * 15 14 12 19 19 C 1.36937 * 120.00318 * 204.99983 * 18 15 14 20 20 H 1.08001 * 120.00070 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00459 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00384 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46816 * 89.99827 * 23 21 19 25 25 H 1.48499 * 109.47502 * 209.99854 * 23 21 19 26 26 H 1.48500 * 109.46982 * 330.00602 * 23 21 19 27 27 S 1.70955 * 124.80172 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46745 * 90.00228 * 1 2 3 29 29 H 1.08997 * 109.47232 * 210.00202 * 1 2 3 30 30 H 1.08998 * 109.46807 * 330.00257 * 1 2 3 31 31 H 1.09001 * 109.47146 * 210.02247 * 5 4 3 32 32 H 1.08999 * 109.46632 * 330.01610 * 5 4 3 33 33 H 1.08999 * 109.47027 * 305.00206 * 6 5 4 34 34 H 1.08997 * 109.47502 * 299.99974 * 7 6 5 35 35 H 1.09002 * 109.46842 * 59.99920 * 7 6 5 36 36 H 1.08999 * 109.47032 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46757 * 59.99814 * 8 6 5 38 38 H 1.08999 * 109.47263 * 180.02562 * 8 6 5 39 39 H 1.09002 * 109.47115 * 300.00538 * 8 6 5 40 40 H 1.08993 * 109.47318 * 83.54309 * 13 12 10 41 41 H 1.09003 * 109.46681 * 203.54181 * 13 12 10 42 42 H 1.09003 * 109.46787 * 323.53785 * 13 12 10 43 43 H 1.08998 * 109.47035 * 209.99585 * 14 12 10 44 44 H 1.08995 * 109.46981 * 329.99975 * 14 12 10 45 45 H 1.09001 * 109.47192 * 299.99728 * 17 15 14 46 46 H 1.08991 * 109.47571 * 59.99847 * 17 15 14 47 47 H 1.09000 * 109.47322 * 179.97438 * 17 15 14 48 48 H 0.96998 * 120.00426 * 24.99766 * 18 15 14 49 49 H 0.96992 * 120.00888 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5442 0.8931 -0.0005 5 6 4.5198 2.0417 -0.0012 6 6 4.8510 2.4304 1.4411 7 6 5.5858 1.2755 2.1246 8 6 5.7424 3.6740 1.4423 9 6 3.9352 -0.4059 -0.0004 10 6 5.3189 -0.8927 -0.0004 11 8 6.2373 -0.1154 -0.1825 12 7 5.5731 -2.2008 0.2011 13 6 4.4665 -3.1394 0.4034 14 6 6.9560 -2.6842 0.2179 15 6 7.5010 -2.6209 1.6462 16 1 7.5550 -1.5811 1.9687 17 6 8.8992 -3.2406 1.6864 18 7 6.6114 -3.3644 2.5417 19 6 6.5671 -3.0548 3.8749 20 1 7.1878 -2.2622 4.2662 21 6 5.7246 -3.7595 4.7236 22 7 4.9678 -4.7251 4.2469 23 14 5.6648 -3.3377 6.5424 24 1 4.6265 -2.3021 6.7764 25 1 5.3327 -4.5567 7.3227 26 1 6.9876 -2.8187 6.9739 27 16 2.4827 -1.4038 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.4330 1.7424 -0.5157 32 1 4.0764 2.8947 -0.5147 33 1 3.9284 2.6442 1.9807 34 1 4.9508 0.3896 2.1238 35 1 6.5084 1.0618 1.5849 36 1 5.8222 1.5526 3.1520 37 1 5.2188 4.4966 0.9552 38 1 5.9786 3.9507 2.4697 39 1 6.6649 3.4602 0.9025 40 1 4.0715 -3.4493 -0.5640 41 1 4.8263 -4.0137 0.9459 42 1 3.6786 -2.6535 0.9790 43 1 6.9851 -3.7144 -0.1367 44 1 7.5674 -2.0586 -0.4323 45 1 8.8452 -4.2804 1.3639 46 1 9.5611 -2.6875 1.0202 47 1 9.2877 -3.1952 2.7038 48 1 6.0536 -4.0759 2.1904 49 1 4.3793 -5.2179 4.8399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571395740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:20 Heat of formation + Delta-G solvation = 13.602926 kcal Electronic energy + Delta-G solvation = -29280.906292 eV Core-core repulsion = 25563.172339 eV Total energy + Delta-G solvation = -3717.733953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42888 -39.12215 -36.47567 -35.73501 -34.32990 -32.41930 -31.92234 -29.19502 -28.67088 -27.83416 -27.02187 -26.75921 -25.31852 -23.64060 -22.87936 -21.33809 -20.03822 -19.88206 -18.31418 -17.90391 -17.31159 -16.42878 -15.76466 -15.68044 -15.03191 -14.84907 -14.46485 -14.30999 -13.93247 -13.83622 -13.70354 -13.36720 -13.31378 -12.81976 -12.64756 -12.53079 -12.41982 -12.26801 -12.14186 -12.10413 -11.79022 -11.61231 -11.47487 -11.32931 -11.13970 -10.87530 -10.73761 -10.68626 -10.52953 -10.47510 -10.36053 -10.08691 -9.71033 -9.55352 -9.38600 -9.14837 -8.95401 -8.60931 -8.14794 -6.97822 -5.80751 -3.07180 0.41585 1.35257 1.74888 2.60790 3.22017 3.41199 3.47479 3.47831 3.49311 4.07200 4.57359 4.77022 4.89807 5.06816 5.19276 5.19999 5.29418 5.34047 5.38285 5.45327 5.47897 5.49693 5.56713 5.69070 5.72026 5.83427 5.87284 5.88351 5.97163 6.05208 6.06484 6.16252 6.20742 6.23879 6.26004 6.29685 6.36058 6.51166 6.61867 6.64043 6.71635 6.82778 6.90281 7.11441 7.59432 7.70403 7.82151 8.38742 8.41716 9.50395 10.05396 10.40947 11.42366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.004625 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.865081 B = 6052.668529 C = 6426.663359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 N -0.482 5.482 4 C 0.150 3.850 5 C -0.053 4.053 6 C -0.082 4.082 7 C -0.147 4.147 8 C -0.141 4.141 9 C -0.290 4.290 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.588 5.588 13 C 0.071 3.929 14 C 0.113 3.887 15 C 0.154 3.846 16 H 0.053 0.947 17 C -0.162 4.162 18 N -0.720 5.720 19 C -0.228 4.228 20 H 0.068 0.932 21 C -0.013 4.013 22 N -0.936 5.936 23 Si 0.901 3.099 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 S 0.195 5.805 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.056 0.944 48 H 0.380 0.620 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 7.503 -12.164 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.255 4.255 3 N -0.197 5.197 4 C 0.011 3.989 5 C -0.092 4.092 6 C -0.101 4.101 7 C -0.204 4.204 8 C -0.199 4.199 9 C -0.414 4.414 10 C 0.385 3.615 11 O -0.407 6.407 12 N -0.319 5.319 13 C -0.074 4.074 14 C -0.010 4.010 15 C 0.044 3.956 16 H 0.071 0.929 17 C -0.223 4.223 18 N -0.363 5.363 19 C -0.359 4.359 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.585 5.585 23 Si 0.733 3.267 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.208 1.208 27 S 0.455 5.545 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.215 0.785 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.573 7.349 -12.095 15.210 hybrid contribution 0.048 0.427 1.244 1.316 sum -5.525 7.776 -10.851 14.448 Atomic orbital electron populations 1.20445 0.85487 1.04237 1.03633 1.27798 1.02392 0.94215 1.01114 1.66100 1.04361 1.32022 1.17265 1.20488 0.89844 0.93361 0.95179 1.20593 0.97110 0.93195 0.98333 1.20966 0.98652 0.95859 0.94638 1.21999 1.01490 0.97336 0.99569 1.21785 0.99755 0.96742 1.01596 1.25474 0.97979 0.97131 1.20813 1.16611 0.85921 0.82039 0.76916 1.90701 1.44668 1.54368 1.51005 1.47410 1.07846 1.06790 1.69813 1.22064 0.89380 0.95305 1.00634 1.21910 0.80883 0.99305 0.98930 1.20668 0.89879 0.96283 0.88815 0.92854 1.22364 0.98417 1.00199 1.01280 1.42440 1.47909 1.40897 1.05016 1.19204 1.18663 1.13658 0.84383 0.91415 1.24634 0.99633 0.98760 0.97795 1.69610 1.29627 1.24985 1.34324 0.86269 0.77626 0.77100 0.85728 1.21891 1.21829 1.20844 1.84501 0.95422 1.08999 1.65610 0.89641 0.89989 0.89537 0.87369 0.90886 0.91904 0.93143 0.90723 0.93588 0.93071 0.92746 0.92348 0.92734 0.87654 0.90784 0.90729 0.89744 0.93477 0.94270 0.92529 0.78513 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.46 36.01 0.38 -0.33 16 2 C 0.02 0.25 7.39 -13.29 -0.10 0.15 16 3 N -0.48 -7.48 10.50 -7.70 -0.08 -7.56 16 4 C 0.15 2.42 5.58 -83.89 -0.47 1.95 16 5 C -0.05 -0.79 4.82 -27.88 -0.13 -0.92 16 6 C -0.08 -1.22 2.91 -90.62 -0.26 -1.48 16 7 C -0.15 -2.56 7.70 37.16 0.29 -2.27 16 8 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 9 C -0.29 -4.77 5.23 -37.10 -0.19 -4.96 16 10 C 0.60 10.53 6.24 -12.85 -0.08 10.45 16 11 O -0.53 -9.88 11.32 5.20 0.06 -9.82 16 12 N -0.59 -9.91 2.73 -183.12 -0.50 -10.41 16 13 C 0.07 1.11 8.47 59.85 0.51 1.62 16 14 C 0.11 1.85 5.03 -4.04 -0.02 1.83 16 15 C 0.15 3.01 3.20 -67.94 -0.22 2.79 16 16 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 17 C -0.16 -2.84 9.49 37.15 0.35 -2.49 16 18 N -0.72 -16.80 4.57 -53.43 -0.24 -17.04 16 19 C -0.23 -6.09 9.93 -15.06 -0.15 -6.24 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.94 -26.60 13.06 55.49 0.72 -25.88 16 23 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 S 0.20 2.63 18.14 -107.50 -1.95 0.68 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.72 5.83 -51.93 -0.30 1.42 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 1.00 5.79 -51.93 -0.30 0.70 16 35 H 0.07 1.37 6.28 -51.93 -0.33 1.04 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 41 H 0.11 1.82 5.80 -51.93 -0.30 1.52 16 42 H 0.07 1.23 4.64 -24.07 -0.11 1.12 16 43 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 44 H 0.08 1.32 7.41 -51.93 -0.38 0.94 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.38 9.08 5.42 -40.82 -0.22 8.86 16 49 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -30.60 391.28 -8.79 -39.39 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.81 Total: 9.31 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 0.14 Total: -1.77 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.10 Total: -60.89 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.95 Total: 0.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.60 -8.79 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571395740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.989 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds