Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29423 * 124.80702 * 2 1 4 4 C 1.30944 * 117.36542 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.90485 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47467 * 90.01574 * 5 4 3 7 7 C 1.53002 * 109.46765 * 65.00046 * 6 5 4 8 8 C 1.53001 * 109.47239 * 185.00074 * 6 5 4 9 9 C 1.35653 * 114.19297 * 359.97438 * 4 3 2 10 10 C 1.46688 * 126.13490 * 180.02562 * 9 4 3 11 11 O 1.21690 * 119.99312 * 350.05078 * 10 9 4 12 12 N 1.34768 * 120.00353 * 170.06074 * 10 9 4 13 13 C 1.46504 * 120.00028 * 0.76843 * 12 10 9 14 14 C 1.46505 * 119.99935 * 180.77060 * 12 10 9 15 15 C 1.53001 * 109.47087 * 89.99854 * 14 12 10 16 16 H 1.09001 * 109.46833 * 295.00020 * 15 14 12 17 17 C 1.52992 * 109.47185 * 175.00073 * 15 14 12 18 18 N 1.46497 * 109.47191 * 54.99816 * 15 14 12 19 19 C 1.36937 * 120.00318 * 204.99983 * 18 15 14 20 20 H 1.08001 * 120.00070 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00459 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00384 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46816 * 89.99827 * 23 21 19 25 25 H 1.48499 * 109.47502 * 209.99854 * 23 21 19 26 26 H 1.48500 * 109.46982 * 330.00602 * 23 21 19 27 27 S 1.70955 * 124.80172 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46745 * 90.00228 * 1 2 3 29 29 H 1.08997 * 109.47232 * 210.00202 * 1 2 3 30 30 H 1.08998 * 109.46807 * 330.00257 * 1 2 3 31 31 H 1.09001 * 109.47146 * 210.02247 * 5 4 3 32 32 H 1.08999 * 109.46632 * 330.01610 * 5 4 3 33 33 H 1.08999 * 109.47027 * 305.00206 * 6 5 4 34 34 H 1.08997 * 109.47502 * 299.99974 * 7 6 5 35 35 H 1.09002 * 109.46842 * 59.99920 * 7 6 5 36 36 H 1.08999 * 109.47032 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46757 * 59.99814 * 8 6 5 38 38 H 1.08999 * 109.47263 * 180.02562 * 8 6 5 39 39 H 1.09002 * 109.47115 * 300.00538 * 8 6 5 40 40 H 1.08993 * 109.47318 * 83.54309 * 13 12 10 41 41 H 1.09003 * 109.46681 * 203.54181 * 13 12 10 42 42 H 1.09003 * 109.46787 * 323.53785 * 13 12 10 43 43 H 1.08998 * 109.47035 * 209.99585 * 14 12 10 44 44 H 1.08995 * 109.46981 * 329.99975 * 14 12 10 45 45 H 1.09001 * 109.47192 * 299.99728 * 17 15 14 46 46 H 1.08991 * 109.47571 * 59.99847 * 17 15 14 47 47 H 1.09000 * 109.47322 * 179.97438 * 17 15 14 48 48 H 0.96998 * 120.00426 * 24.99766 * 18 15 14 49 49 H 0.96992 * 120.00888 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5442 0.8931 -0.0005 5 6 4.5198 2.0417 -0.0012 6 6 4.8510 2.4304 1.4411 7 6 5.5858 1.2755 2.1246 8 6 5.7424 3.6740 1.4423 9 6 3.9352 -0.4059 -0.0004 10 6 5.3189 -0.8927 -0.0004 11 8 6.2373 -0.1154 -0.1825 12 7 5.5731 -2.2008 0.2011 13 6 4.4665 -3.1394 0.4034 14 6 6.9560 -2.6842 0.2179 15 6 7.5010 -2.6209 1.6462 16 1 7.5550 -1.5811 1.9687 17 6 8.8992 -3.2406 1.6864 18 7 6.6114 -3.3644 2.5417 19 6 6.5671 -3.0548 3.8749 20 1 7.1878 -2.2622 4.2662 21 6 5.7246 -3.7595 4.7236 22 7 4.9678 -4.7251 4.2469 23 14 5.6648 -3.3377 6.5424 24 1 4.6265 -2.3021 6.7764 25 1 5.3327 -4.5567 7.3227 26 1 6.9876 -2.8187 6.9739 27 16 2.4827 -1.4038 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.4330 1.7424 -0.5157 32 1 4.0764 2.8947 -0.5147 33 1 3.9284 2.6442 1.9807 34 1 4.9508 0.3896 2.1238 35 1 6.5084 1.0618 1.5849 36 1 5.8222 1.5526 3.1520 37 1 5.2188 4.4966 0.9552 38 1 5.9786 3.9507 2.4697 39 1 6.6649 3.4602 0.9025 40 1 4.0715 -3.4493 -0.5640 41 1 4.8263 -4.0137 0.9459 42 1 3.6786 -2.6535 0.9790 43 1 6.9851 -3.7144 -0.1367 44 1 7.5674 -2.0586 -0.4323 45 1 8.8452 -4.2804 1.3639 46 1 9.5611 -2.6875 1.0202 47 1 9.2877 -3.1952 2.7038 48 1 6.0536 -4.0759 2.1904 49 1 4.3793 -5.2179 4.8399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571395740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = -4.239099 kcal Electronic energy + Delta-G solvation = -29281.679980 eV Core-core repulsion = 25563.172339 eV Total energy + Delta-G solvation = -3718.507641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64745 -40.38741 -37.94988 -37.00895 -35.87327 -34.06830 -33.16847 -30.83558 -29.89292 -29.04386 -28.35530 -28.00298 -26.70156 -25.55743 -23.92619 -22.68308 -21.43498 -21.19393 -19.57991 -19.30589 -19.05544 -17.69960 -17.09727 -16.96135 -16.58961 -16.20038 -15.90372 -15.67015 -15.42662 -15.11105 -14.93307 -14.84033 -14.52549 -14.06289 -13.90404 -13.84680 -13.67831 -13.50005 -13.36347 -13.19556 -13.11197 -12.99467 -12.89360 -12.82357 -12.72284 -12.51726 -12.33269 -12.19555 -11.92642 -11.89115 -11.74725 -11.66881 -11.59780 -10.99623 -10.83910 -10.55679 -10.29268 -9.84242 -9.41222 -8.93373 -7.92273 -5.16381 -0.71900 0.25084 0.63952 1.42138 1.43154 1.44959 1.51508 1.93146 2.21318 2.55591 3.05704 3.41878 3.53281 3.85664 3.87701 3.89466 4.01701 4.05917 4.13530 4.18773 4.25320 4.39237 4.44924 4.58424 4.66328 4.67039 4.67844 4.71764 4.74089 4.78628 4.82049 4.87369 4.89129 4.98128 5.03223 5.10410 5.11638 5.15023 5.27259 5.31897 5.34755 5.38516 5.50154 5.53860 5.65907 6.27232 6.33457 6.68402 7.08525 7.39230 8.11840 8.39876 9.30380 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.004625 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.865081 B = 6052.668529 C = 6426.663359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 N -0.505 5.505 4 C 0.144 3.856 5 C -0.049 4.049 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.326 4.326 10 C 0.593 3.407 11 O -0.547 6.547 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.119 3.881 15 C 0.153 3.847 16 H 0.025 0.975 17 C -0.152 4.152 18 N -0.723 5.723 19 C -0.227 4.227 20 H 0.058 0.942 21 C -0.062 4.062 22 N -0.957 5.957 23 Si 0.952 3.048 24 H -0.295 1.295 25 H -0.292 1.292 26 H -0.278 1.278 27 S 0.224 5.776 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.377 0.623 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 7.916 -13.148 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.248 4.248 3 N -0.221 5.221 4 C 0.005 3.995 5 C -0.089 4.089 6 C -0.095 4.095 7 C -0.193 4.193 8 C -0.193 4.193 9 C -0.450 4.450 10 C 0.381 3.619 11 O -0.429 6.429 12 N -0.323 5.323 13 C -0.071 4.071 14 C -0.004 4.004 15 C 0.043 3.957 16 H 0.043 0.957 17 C -0.212 4.212 18 N -0.366 5.366 19 C -0.359 4.359 20 H 0.076 0.924 21 C -0.255 4.255 22 N -0.608 5.608 23 Si 0.783 3.217 24 H -0.223 1.223 25 H -0.219 1.219 26 H -0.204 1.204 27 S 0.484 5.516 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.212 0.788 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.491 7.758 -13.096 16.548 hybrid contribution 0.300 0.329 1.519 1.583 sum -6.191 8.087 -11.577 15.419 Atomic orbital electron populations 1.20694 0.82358 1.05399 1.05521 1.28572 1.04180 0.93548 0.98540 1.66176 1.04099 1.32901 1.18903 1.20703 0.90502 0.93618 0.94687 1.20550 0.96614 0.93534 0.98183 1.20917 0.98518 0.95823 0.94265 1.21873 1.00549 0.97323 0.99546 1.21742 0.99330 0.95986 1.02244 1.25466 0.98528 0.98134 1.22850 1.16837 0.86451 0.82049 0.76517 1.90673 1.45473 1.54778 1.51942 1.47503 1.08228 1.06906 1.69682 1.22078 0.88796 0.94123 1.02066 1.21860 0.80928 1.00881 0.96724 1.20784 0.90628 0.94253 0.89986 0.95732 1.22204 0.97266 1.00984 1.00754 1.42495 1.48618 1.41089 1.04387 1.19362 1.17741 1.12764 0.86029 0.92410 1.25191 1.00143 0.99356 1.00792 1.69711 1.30341 1.25823 1.34967 0.85462 0.77441 0.76540 0.82285 1.22273 1.21868 1.20382 1.84241 0.93809 1.08395 1.65121 0.87187 0.88087 0.89051 0.88563 0.89398 0.92363 0.96008 0.92040 0.93843 0.91036 0.92209 0.92475 0.89382 0.89364 0.91876 0.88435 0.88754 0.92580 0.91346 0.94657 0.78776 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.46 71.24 0.75 -0.47 16 2 C 0.02 0.62 7.39 88.46 0.65 1.27 16 3 N -0.50 -15.16 10.50 -178.29 -1.87 -17.03 16 4 C 0.14 4.64 5.58 42.09 0.24 4.87 16 5 C -0.05 -1.47 4.82 29.85 0.14 -1.33 16 6 C -0.08 -2.25 2.91 -10.79 -0.03 -2.29 16 7 C -0.14 -4.89 7.70 71.98 0.55 -4.34 16 8 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 9 C -0.33 -10.72 5.23 23.88 0.12 -10.60 16 10 C 0.59 21.15 6.24 86.45 0.54 21.69 16 11 O -0.55 -20.94 11.32 -4.32 -0.05 -20.99 16 12 N -0.59 -19.90 2.73 -851.49 -2.32 -22.23 16 13 C 0.07 2.28 8.47 127.77 1.08 3.36 16 14 C 0.12 3.81 5.03 86.38 0.43 4.24 16 15 C 0.15 5.99 3.20 44.99 0.14 6.13 16 16 H 0.02 1.10 8.08 -2.39 -0.02 1.08 16 17 C -0.15 -5.20 9.49 71.98 0.68 -4.51 16 18 N -0.72 -34.15 4.57 -322.96 -1.47 -35.63 16 19 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 20 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 21 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 22 N -0.96 -54.83 13.06 21.65 0.28 -54.54 16 23 Si 0.95 46.08 29.55 68.60 2.03 48.11 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 S 0.22 5.79 18.14 -56.49 -1.02 4.77 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 3.11 5.83 -2.39 -0.01 3.10 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.02 0.88 5.79 -2.39 -0.01 0.86 16 35 H 0.06 2.35 6.28 -2.39 -0.01 2.34 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 2.07 7.81 -2.39 -0.02 2.05 16 41 H 0.09 3.04 5.80 -2.39 -0.01 3.03 16 42 H 0.06 2.10 4.64 -20.10 -0.09 2.00 16 43 H 0.10 2.68 8.07 -2.39 -0.02 2.66 16 44 H 0.09 2.86 7.41 -2.39 -0.02 2.84 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.38 18.19 5.42 -92.71 -0.50 17.69 16 49 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -66.73 391.28 3.20 -63.53 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.37 Total: 32.98 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 7.27 Total: 1.02 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.39 Total: -129.43 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.02 Total: 4.77 kcal Total: -66.73 3.20 -63.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571395740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.292 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds