Wall clock time and date at job start Tue Mar 31 2020 22:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29030 * 124.91315 * 2 1 4 4 C 1.31777 * 117.12389 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75261 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46959 * 305.02870 * 5 4 3 7 7 C 1.50698 * 109.47225 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99609 * 355.38641 * 7 6 5 9 9 N 1.34770 * 120.00216 * 175.38342 * 7 6 5 10 10 C 1.46502 * 119.99974 * 5.08161 * 9 7 6 11 11 C 1.53002 * 109.47144 * 89.99689 * 10 9 7 12 12 N 1.46500 * 109.46759 * 180.02562 * 11 10 9 13 13 C 1.46502 * 120.00098 * 269.99798 * 12 11 10 14 14 C 1.36935 * 120.00101 * 90.00334 * 12 11 10 15 15 H 1.08004 * 119.99692 * 23.31129 * 14 12 11 16 16 C 1.38812 * 120.00314 * 203.31077 * 14 12 11 17 17 N 1.31624 * 119.99663 * 10.50265 * 16 14 12 18 18 Si 1.86799 * 120.00191 * 190.49946 * 16 14 12 19 19 H 1.48498 * 109.47203 * 90.00409 * 18 16 14 20 20 H 1.48499 * 109.47103 * 210.00114 * 18 16 14 21 21 H 1.48498 * 109.46966 * 330.00093 * 18 16 14 22 22 C 1.46498 * 120.00126 * 185.07890 * 9 7 6 23 23 C 1.52995 * 109.47151 * 298.56345 * 22 9 7 24 24 C 1.53001 * 109.47146 * 58.56671 * 22 9 7 25 25 C 1.33646 * 114.50024 * 0.23457 * 4 3 2 26 26 S 1.70976 * 124.91759 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47493 * 90.00082 * 1 2 3 28 28 H 1.09010 * 109.46810 * 209.99387 * 1 2 3 29 29 H 1.08997 * 109.47350 * 329.99413 * 1 2 3 30 30 H 1.08992 * 109.47263 * 185.02213 * 5 4 3 31 31 H 1.09000 * 109.46296 * 65.02520 * 5 4 3 32 32 H 1.09000 * 109.46886 * 299.99648 * 6 5 4 33 33 H 1.09005 * 109.47120 * 59.99415 * 6 5 4 34 34 H 1.08999 * 109.47334 * 209.99864 * 10 9 7 35 35 H 1.09002 * 109.47250 * 329.99900 * 10 9 7 36 36 H 1.08999 * 109.47148 * 300.00289 * 11 10 9 37 37 H 1.08995 * 109.47155 * 60.00235 * 11 10 9 38 38 H 1.08994 * 109.46989 * 94.91703 * 13 12 11 39 39 H 1.09001 * 109.46990 * 214.91746 * 13 12 11 40 40 H 1.09004 * 109.47046 * 334.91665 * 13 12 11 41 41 H 0.96997 * 119.99944 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.46928 * 178.56576 * 22 9 7 43 43 H 1.09004 * 109.47338 * 65.67808 * 23 22 9 44 44 H 1.09003 * 109.47405 * 185.67314 * 23 22 9 45 45 H 1.09006 * 109.47331 * 305.67793 * 23 22 9 46 46 H 1.08999 * 109.47169 * 63.81065 * 24 22 9 47 47 H 1.09002 * 109.47276 * 183.81405 * 24 22 9 48 48 H 1.09000 * 109.46917 * 303.81627 * 24 22 9 49 49 H 1.08005 * 126.03705 * 179.76793 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2325 2.9502 -1.1824 7 6 5.2116 4.0958 -1.1827 8 8 6.0099 4.2113 -0.2771 9 7 5.2001 4.9918 -2.1894 10 6 4.1659 4.9176 -3.2243 11 6 2.9605 5.7600 -2.8021 12 7 1.9260 5.6852 -3.8368 13 6 1.9131 6.6589 -4.9314 14 6 0.9711 4.7054 -3.7808 15 1 0.7322 4.2375 -2.8372 16 6 0.3103 4.3133 -4.9369 17 7 0.7371 4.7269 -6.1113 18 14 -1.1848 3.1989 -4.8258 19 1 -2.4113 4.0269 -4.7027 20 1 -1.2720 2.3642 -6.0509 21 1 -1.0594 2.3197 -3.6357 22 6 6.2218 6.0400 -2.2487 23 6 6.1195 6.9230 -1.0034 24 6 7.6091 5.3974 -2.3057 25 6 3.9354 -0.4005 -0.0060 26 16 2.4857 -1.4020 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 5.5447 1.6355 -0.0915 31 1 4.4374 2.5829 0.9304 32 1 4.3256 2.3919 -2.1139 33 1 3.2183 3.3395 -1.0920 34 1 4.5644 5.2992 -4.1644 35 1 3.8565 3.8806 -3.3552 36 1 2.5619 5.3784 -1.8621 37 1 3.2698 6.7969 -2.6713 38 1 2.4386 6.2450 -5.7920 39 1 0.8824 6.8815 -5.2076 40 1 2.4088 7.5746 -4.6090 41 1 0.2756 4.4526 -6.9192 42 1 6.0665 6.6488 -3.1395 43 1 6.3738 6.3367 -0.1204 44 1 6.8106 7.7610 -1.0944 45 1 5.1013 7.3003 -0.9081 46 1 7.7058 4.8227 -3.2269 47 1 8.3716 6.1760 -2.2815 48 1 7.7384 4.7355 -1.4494 49 1 4.9546 -0.7580 -0.0109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571615664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:01 Heat of formation + Delta-G solvation = 22.464865 kcal Electronic energy + Delta-G solvation = -28284.395155 eV Core-core repulsion = 24567.045485 eV Total energy + Delta-G solvation = -3717.349670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.19488 -39.62273 -36.35555 -35.30712 -33.90311 -32.69462 -31.24644 -30.68626 -28.31110 -27.74212 -26.96343 -25.89388 -25.33489 -23.40582 -22.65471 -21.40713 -20.53849 -19.66012 -18.33524 -17.51033 -16.79773 -16.48800 -15.84500 -15.50408 -15.10993 -15.00382 -14.70621 -14.08128 -13.81018 -13.68098 -13.58541 -13.34638 -13.15526 -13.08039 -12.87342 -12.65497 -12.53095 -12.33148 -12.20256 -11.79680 -11.77166 -11.61221 -11.41251 -11.37382 -11.07626 -10.96448 -10.86629 -10.82054 -10.77682 -10.48848 -10.16929 -9.97350 -9.80728 -9.58456 -9.40386 -9.20020 -8.65905 -8.62953 -8.32480 -6.77590 -5.75304 -3.22448 0.71205 1.34978 1.71148 2.80116 2.97845 3.33654 3.37510 3.42756 3.43835 4.06766 4.47904 4.72903 4.95745 5.10571 5.19582 5.21999 5.27675 5.31570 5.36392 5.38979 5.43034 5.45786 5.58543 5.64062 5.69981 5.78205 5.79226 5.87410 5.89259 6.01271 6.06895 6.13621 6.15060 6.19357 6.26445 6.33094 6.39984 6.48050 6.53500 6.71924 6.81601 7.06664 7.35477 7.69977 7.78594 7.80563 7.81873 8.37457 8.54678 9.21249 9.83391 10.32160 11.29489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006427 B = 0.005351 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4355.721673 B = 5231.652878 C = 9037.726846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.060 3.940 3 N -0.463 5.463 4 C 0.080 3.920 5 C -0.025 4.025 6 C -0.133 4.133 7 C 0.521 3.479 8 O -0.554 6.554 9 N -0.604 5.604 10 C 0.084 3.916 11 C 0.141 3.859 12 N -0.599 5.599 13 C 0.163 3.837 14 C -0.252 4.252 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.909 5.909 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.144 3.856 23 C -0.166 4.166 24 C -0.167 4.167 25 C -0.263 4.263 26 S 0.095 5.905 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.044 0.956 40 H -0.004 1.004 41 H 0.252 0.748 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -7.182 10.357 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.219 4.219 3 N -0.178 5.178 4 C -0.052 4.052 5 C -0.065 4.065 6 C -0.174 4.174 7 C 0.310 3.690 8 O -0.434 6.434 9 N -0.337 5.337 10 C -0.041 4.041 11 C 0.013 3.987 12 N -0.322 5.322 13 C 0.018 3.982 14 C -0.382 4.382 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.554 5.554 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.203 1.203 22 C 0.041 3.959 23 C -0.224 4.224 24 C -0.225 4.225 25 C -0.402 4.402 26 S 0.349 5.651 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.244 -7.706 10.629 14.994 hybrid contribution -0.256 0.006 -0.455 0.522 sum 6.988 -7.700 10.174 14.547 Atomic orbital electron populations 1.20489 0.85158 1.04064 1.04382 1.27078 1.01809 0.90578 1.02417 1.66097 1.04461 1.31361 1.15846 1.20344 0.90182 0.94229 1.00454 1.19911 0.95265 0.91851 0.99499 1.21619 1.00904 0.95127 0.99700 1.20552 0.84226 0.83064 0.81146 1.90572 1.41020 1.75927 1.35853 1.48291 1.29426 1.29575 1.26441 1.22799 0.88353 1.03301 0.89691 1.21181 0.88117 0.96574 0.92844 1.43941 1.28417 1.32588 1.27211 1.20829 0.99887 0.87588 0.89868 1.19230 1.12357 1.13590 0.93036 0.91256 1.25038 1.00094 0.99106 0.95237 1.70054 1.40443 1.48142 0.96748 0.86280 0.83108 0.80402 0.76990 1.21482 1.21801 1.20294 1.20952 0.87611 0.88515 0.98851 1.22199 1.01678 0.99133 0.99362 1.22175 0.95901 1.01581 1.02807 1.26759 1.02849 0.95662 1.14935 1.83847 0.98415 1.13485 1.69307 0.89190 0.90277 0.89018 0.89926 0.89412 0.89193 0.87412 0.91189 0.90074 0.93682 0.94330 0.95172 0.93762 0.98530 0.93765 0.89966 0.90478 0.92577 0.92642 0.93046 0.92226 0.90576 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.46 36.01 0.38 -0.48 16 2 C 0.06 0.79 7.39 -13.45 -0.10 0.69 16 3 N -0.46 -7.23 10.34 -8.05 -0.08 -7.32 16 4 C 0.08 1.13 6.08 -84.22 -0.51 0.61 16 5 C -0.02 -0.34 5.01 -27.88 -0.14 -0.48 16 6 C -0.13 -2.05 4.15 -27.88 -0.12 -2.17 16 7 C 0.52 8.43 7.05 -10.99 -0.08 8.35 16 8 O -0.55 -9.63 12.27 5.56 0.07 -9.57 16 9 N -0.60 -9.52 2.42 -166.11 -0.40 -9.92 16 10 C 0.08 1.49 5.59 -4.04 -0.02 1.46 16 11 C 0.14 2.82 6.03 -4.04 -0.02 2.79 16 12 N -0.60 -14.52 2.92 -181.12 -0.53 -15.05 16 13 C 0.16 3.90 9.01 59.85 0.54 4.44 16 14 C -0.25 -6.71 9.67 -15.06 -0.15 -6.85 16 15 H 0.07 1.84 7.84 -52.48 -0.41 1.42 16 16 C 0.00 0.09 5.15 -17.43 -0.09 0.00 16 17 N -0.91 -25.74 10.59 55.49 0.59 -25.16 16 18 Si 0.90 21.40 29.57 -169.99 -5.03 16.38 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.14 2.01 3.28 -67.93 -0.22 1.79 16 23 C -0.17 -2.24 9.04 37.15 0.34 -1.90 16 24 C -0.17 -2.15 9.15 37.16 0.34 -1.81 16 25 C -0.26 -3.15 11.07 29.12 0.32 -2.83 16 26 S 0.10 1.05 23.18 -107.50 -2.49 -1.44 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.03 8.02 -51.93 -0.42 0.62 16 31 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 32 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 33 H 0.11 1.86 7.61 -51.93 -0.40 1.46 16 34 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 35 H 0.08 1.56 6.32 -51.93 -0.33 1.23 16 36 H 0.04 0.92 7.57 -51.93 -0.39 0.53 16 37 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 38 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 39 H 0.04 1.15 7.28 -51.93 -0.38 0.77 16 40 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.08 1.10 7.79 -51.93 -0.40 0.69 16 43 H 0.08 1.17 6.29 -51.93 -0.33 0.84 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.11 6.14 -51.93 -0.32 0.80 16 49 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -30.30 405.33 -9.60 -39.90 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.30 Total: 2.43 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 0.47 Total: 3.63 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.43 Total: -57.44 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.30 -9.60 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.365 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds