Wall clock time and date at job start Tue Mar 31 2020 22:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29030 * 124.91315 * 2 1 4 4 C 1.31777 * 117.12389 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75261 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46959 * 305.02870 * 5 4 3 7 7 C 1.50698 * 109.47225 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99609 * 355.38641 * 7 6 5 9 9 N 1.34770 * 120.00216 * 175.38342 * 7 6 5 10 10 C 1.46502 * 119.99974 * 5.08161 * 9 7 6 11 11 C 1.53002 * 109.47144 * 89.99689 * 10 9 7 12 12 N 1.46500 * 109.46759 * 180.02562 * 11 10 9 13 13 C 1.46502 * 120.00098 * 269.99798 * 12 11 10 14 14 C 1.36935 * 120.00101 * 90.00334 * 12 11 10 15 15 H 1.08004 * 119.99692 * 23.31129 * 14 12 11 16 16 C 1.38812 * 120.00314 * 203.31077 * 14 12 11 17 17 N 1.31624 * 119.99663 * 10.50265 * 16 14 12 18 18 Si 1.86799 * 120.00191 * 190.49946 * 16 14 12 19 19 H 1.48498 * 109.47203 * 90.00409 * 18 16 14 20 20 H 1.48499 * 109.47103 * 210.00114 * 18 16 14 21 21 H 1.48498 * 109.46966 * 330.00093 * 18 16 14 22 22 C 1.46498 * 120.00126 * 185.07890 * 9 7 6 23 23 C 1.52995 * 109.47151 * 298.56345 * 22 9 7 24 24 C 1.53001 * 109.47146 * 58.56671 * 22 9 7 25 25 C 1.33646 * 114.50024 * 0.23457 * 4 3 2 26 26 S 1.70976 * 124.91759 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47493 * 90.00082 * 1 2 3 28 28 H 1.09010 * 109.46810 * 209.99387 * 1 2 3 29 29 H 1.08997 * 109.47350 * 329.99413 * 1 2 3 30 30 H 1.08992 * 109.47263 * 185.02213 * 5 4 3 31 31 H 1.09000 * 109.46296 * 65.02520 * 5 4 3 32 32 H 1.09000 * 109.46886 * 299.99648 * 6 5 4 33 33 H 1.09005 * 109.47120 * 59.99415 * 6 5 4 34 34 H 1.08999 * 109.47334 * 209.99864 * 10 9 7 35 35 H 1.09002 * 109.47250 * 329.99900 * 10 9 7 36 36 H 1.08999 * 109.47148 * 300.00289 * 11 10 9 37 37 H 1.08995 * 109.47155 * 60.00235 * 11 10 9 38 38 H 1.08994 * 109.46989 * 94.91703 * 13 12 11 39 39 H 1.09001 * 109.46990 * 214.91746 * 13 12 11 40 40 H 1.09004 * 109.47046 * 334.91665 * 13 12 11 41 41 H 0.96997 * 119.99944 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.46928 * 178.56576 * 22 9 7 43 43 H 1.09004 * 109.47338 * 65.67808 * 23 22 9 44 44 H 1.09003 * 109.47405 * 185.67314 * 23 22 9 45 45 H 1.09006 * 109.47331 * 305.67793 * 23 22 9 46 46 H 1.08999 * 109.47169 * 63.81065 * 24 22 9 47 47 H 1.09002 * 109.47276 * 183.81405 * 24 22 9 48 48 H 1.09000 * 109.46917 * 303.81627 * 24 22 9 49 49 H 1.08005 * 126.03705 * 179.76793 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2325 2.9502 -1.1824 7 6 5.2116 4.0958 -1.1827 8 8 6.0099 4.2113 -0.2771 9 7 5.2001 4.9918 -2.1894 10 6 4.1659 4.9176 -3.2243 11 6 2.9605 5.7600 -2.8021 12 7 1.9260 5.6852 -3.8368 13 6 1.9131 6.6589 -4.9314 14 6 0.9711 4.7054 -3.7808 15 1 0.7322 4.2375 -2.8372 16 6 0.3103 4.3133 -4.9369 17 7 0.7371 4.7269 -6.1113 18 14 -1.1848 3.1989 -4.8258 19 1 -2.4113 4.0269 -4.7027 20 1 -1.2720 2.3642 -6.0509 21 1 -1.0594 2.3197 -3.6357 22 6 6.2218 6.0400 -2.2487 23 6 6.1195 6.9230 -1.0034 24 6 7.6091 5.3974 -2.3057 25 6 3.9354 -0.4005 -0.0060 26 16 2.4857 -1.4020 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 5.5447 1.6355 -0.0915 31 1 4.4374 2.5829 0.9304 32 1 4.3256 2.3919 -2.1139 33 1 3.2183 3.3395 -1.0920 34 1 4.5644 5.2992 -4.1644 35 1 3.8565 3.8806 -3.3552 36 1 2.5619 5.3784 -1.8621 37 1 3.2698 6.7969 -2.6713 38 1 2.4386 6.2450 -5.7920 39 1 0.8824 6.8815 -5.2076 40 1 2.4088 7.5746 -4.6090 41 1 0.2756 4.4526 -6.9192 42 1 6.0665 6.6488 -3.1395 43 1 6.3738 6.3367 -0.1204 44 1 6.8106 7.7610 -1.0944 45 1 5.1013 7.3003 -0.9081 46 1 7.7058 4.8227 -3.2269 47 1 8.3716 6.1760 -2.2815 48 1 7.7384 4.7355 -1.4494 49 1 4.9546 -0.7580 -0.0109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571615664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:00 Heat of formation + Delta-G solvation = 6.739587 kcal Electronic energy + Delta-G solvation = -28285.077055 eV Core-core repulsion = 24567.045485 eV Total energy + Delta-G solvation = -3718.031570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39872 -40.73235 -37.96180 -36.82611 -35.10148 -34.02140 -32.95389 -31.85408 -29.45763 -29.18408 -28.03127 -27.88639 -26.49469 -25.08405 -23.71471 -22.57838 -22.30406 -20.63765 -19.63385 -18.75965 -18.51764 -17.80591 -17.12632 -16.93986 -16.53989 -16.14951 -15.97156 -15.52339 -15.28808 -15.09614 -14.83563 -14.60216 -14.42106 -14.27512 -14.06887 -14.02053 -13.93952 -13.54079 -13.22070 -13.05216 -13.00321 -12.84097 -12.80754 -12.75546 -12.69038 -12.46452 -12.40975 -12.12070 -12.07795 -12.03817 -11.96250 -11.90666 -11.49402 -10.65469 -10.57283 -10.49406 -10.35209 -9.73779 -9.60911 -8.73817 -7.81650 -5.30560 -0.24214 0.44272 0.75773 1.46265 1.47530 1.56184 1.64854 1.76130 2.07938 2.52795 3.14263 3.33221 3.48153 3.82917 3.93039 4.01980 4.08411 4.10093 4.18863 4.21526 4.34377 4.38809 4.46171 4.55337 4.60971 4.62263 4.62618 4.66533 4.73483 4.80547 4.86788 4.94226 4.96242 4.97556 5.00952 5.04306 5.06736 5.22524 5.26467 5.32413 5.35718 5.40420 5.65932 5.74644 5.78600 6.32652 6.47482 6.84364 7.16961 7.23135 7.86728 8.30022 9.21241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006427 B = 0.005351 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4355.721673 B = 5231.652878 C = 9037.726846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.034 3.966 3 N -0.504 5.504 4 C 0.053 3.947 5 C -0.015 4.015 6 C -0.124 4.124 7 C 0.521 3.479 8 O -0.563 6.563 9 N -0.602 5.602 10 C 0.104 3.896 11 C 0.146 3.854 12 N -0.613 5.613 13 C 0.177 3.823 14 C -0.255 4.255 15 H 0.065 0.935 16 C -0.046 4.046 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.135 3.865 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.261 4.261 26 S 0.153 5.847 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.010 0.990 39 H 0.016 0.984 40 H 0.029 0.971 41 H 0.248 0.752 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -8.048 11.015 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.244 4.244 3 N -0.221 5.221 4 C -0.079 4.079 5 C -0.056 4.056 6 C -0.165 4.165 7 C 0.311 3.689 8 O -0.443 6.443 9 N -0.334 5.334 10 C -0.021 4.021 11 C 0.019 3.981 12 N -0.337 5.337 13 C 0.032 3.968 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.241 4.241 17 N -0.582 5.582 18 Si 0.787 3.213 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.192 1.192 22 C 0.033 3.967 23 C -0.216 4.216 24 C -0.216 4.216 25 C -0.400 4.400 26 S 0.408 5.592 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.182 -8.570 11.322 16.388 hybrid contribution -0.490 0.273 -0.587 0.812 sum 7.692 -8.297 10.735 15.597 Atomic orbital electron populations 1.20596 0.83882 1.05289 1.04385 1.27515 1.03030 0.91389 1.02452 1.66090 1.05429 1.33226 1.17322 1.20373 0.89969 0.95057 1.02461 1.19804 0.96088 0.91631 0.98046 1.21504 0.99360 0.95160 1.00426 1.20648 0.84106 0.83199 0.80963 1.90571 1.41460 1.76192 1.36088 1.48246 1.29317 1.30123 1.25749 1.22303 0.88078 1.01721 0.90021 1.21203 0.87896 0.97808 0.91222 1.44110 1.29476 1.32293 1.27831 1.20592 0.98197 0.88642 0.89382 1.19404 1.12857 1.13512 0.92787 0.91739 1.25688 1.02592 1.00784 0.95045 1.70200 1.41480 1.49470 0.97032 0.85391 0.80071 0.78872 0.76994 1.21442 1.22110 1.19196 1.21218 0.87611 0.88264 0.99631 1.22125 1.01768 0.99524 0.98219 1.22096 0.95722 1.01879 1.01940 1.27147 1.04699 0.95295 1.12894 1.83582 0.96674 1.11268 1.67726 0.89660 0.87230 0.89719 0.88556 0.90537 0.89477 0.89672 0.91037 0.91702 0.94521 0.92725 0.97175 0.96527 0.95234 0.94309 0.88767 0.92287 0.89994 0.93560 0.92966 0.89874 0.92408 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.46 71.24 0.75 -0.91 16 2 C 0.03 0.87 7.39 88.52 0.65 1.53 16 3 N -0.50 -15.92 10.34 -179.39 -1.86 -17.77 16 4 C 0.05 1.48 6.08 41.53 0.25 1.73 16 5 C -0.02 -0.43 5.01 29.85 0.15 -0.28 16 6 C -0.12 -3.90 4.15 29.85 0.12 -3.77 16 7 C 0.52 16.80 7.05 87.66 0.62 17.42 16 8 O -0.56 -19.37 12.27 -3.04 -0.04 -19.40 16 9 N -0.60 -18.53 2.42 -797.84 -1.93 -20.46 16 10 C 0.10 3.67 5.59 86.38 0.48 4.16 16 11 C 0.15 5.77 6.03 86.38 0.52 6.29 16 12 N -0.61 -29.83 2.92 -726.93 -2.13 -31.96 16 13 C 0.18 8.45 9.01 127.77 1.15 9.60 16 14 C -0.26 -13.71 9.67 84.03 0.81 -12.90 16 15 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 16 C -0.05 -2.51 5.15 84.86 0.44 -2.07 16 17 N -0.94 -53.80 10.59 21.65 0.23 -53.57 16 18 Si 0.96 44.35 29.57 68.60 2.03 46.37 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 C 0.14 3.54 3.28 44.99 0.15 3.68 16 23 C -0.16 -4.00 9.04 71.98 0.65 -3.35 16 24 C -0.16 -3.77 9.15 71.98 0.66 -3.11 16 25 C -0.26 -5.82 11.07 66.78 0.74 -5.08 16 26 S 0.15 3.07 23.18 -56.49 -1.31 1.76 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.34 8.02 -2.39 -0.02 2.32 16 31 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 32 H 0.09 2.75 7.34 -2.39 -0.02 2.73 16 33 H 0.08 3.07 7.61 -2.38 -0.02 3.05 16 34 H 0.07 2.52 7.91 -2.39 -0.02 2.50 16 35 H 0.06 2.52 6.32 -2.39 -0.02 2.50 16 36 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.05 1.98 7.86 -2.39 -0.02 1.96 16 38 H 0.01 0.52 7.36 -2.39 -0.02 0.50 16 39 H 0.02 0.85 7.28 -2.39 -0.02 0.83 16 40 H 0.03 1.19 7.84 -2.38 -0.02 1.17 16 41 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.09 2.27 7.79 -2.38 -0.02 2.25 16 43 H 0.06 1.72 6.29 -2.39 -0.02 1.70 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.61 6.14 -2.39 -0.01 1.59 16 49 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -65.45 405.33 4.06 -61.39 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.92 Total: 20.71 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 8.14 Total: 12.93 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.68 Total: -123.76 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.04 Total: -19.40 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -65.45 4.06 -61.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571615664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.125 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds