Wall clock time and date at job start Tue Mar 31 2020 23:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.52999 * 109.47005 * 65.00297 * 3 2 1 5 5 C 1.53001 * 109.47164 * 186.20282 * 4 3 2 6 6 C 1.52999 * 109.47048 * 185.00150 * 3 2 1 7 7 N 1.46500 * 109.47002 * 63.31032 * 6 3 2 8 8 C 1.46497 * 119.99664 * 263.94661 * 7 6 3 9 9 C 1.50704 * 109.47167 * 269.99800 * 8 7 6 10 10 H 1.08001 * 119.99978 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99887 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00213 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99781 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47184 * 90.00110 * 13 11 9 15 15 H 1.48499 * 109.47150 * 209.99813 * 13 11 9 16 16 H 1.48498 * 109.47294 * 330.00391 * 13 11 9 17 17 C 1.34774 * 120.00347 * 83.94904 * 7 6 3 18 18 O 1.21279 * 120.00061 * 355.08097 * 17 7 6 19 19 C 1.50699 * 120.00165 * 175.08584 * 17 7 6 20 20 C 1.50697 * 109.47226 * 179.97438 * 19 17 7 21 21 C 1.33634 * 122.75277 * 124.99527 * 20 19 17 22 22 S 1.76200 * 107.92769 * 179.75893 * 21 20 19 23 23 C 1.70977 * 90.28062 * 0.28083 * 22 21 20 24 24 C 1.50703 * 124.91972 * 179.97438 * 23 22 21 25 25 N 1.46900 * 109.47280 * 269.70316 * 24 23 22 26 26 N 1.29032 * 110.16993 * 359.71444 * 23 22 21 27 27 H 1.09006 * 109.46802 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46665 * 299.99396 * 1 2 3 29 29 H 1.08997 * 109.47256 * 59.99613 * 1 2 3 30 30 H 1.09002 * 109.46665 * 240.00604 * 2 1 3 31 31 H 1.08997 * 109.47256 * 120.00386 * 2 1 3 32 32 H 1.09001 * 109.47308 * 305.00234 * 3 2 1 33 33 H 1.09005 * 109.47319 * 306.20549 * 4 3 2 34 34 H 1.08998 * 109.47219 * 66.20551 * 4 3 2 35 35 H 1.08988 * 109.47366 * 303.82195 * 5 4 3 36 36 H 1.09003 * 109.46899 * 63.82160 * 5 4 3 37 37 H 1.09007 * 109.47160 * 183.81701 * 5 4 3 38 38 H 1.08994 * 109.47442 * 303.30228 * 6 3 2 39 39 H 1.09004 * 109.46764 * 183.30185 * 6 3 2 40 40 H 1.09001 * 109.47510 * 29.99799 * 8 7 6 41 41 H 1.09000 * 109.47464 * 149.99879 * 8 7 6 42 42 H 0.96993 * 120.00221 * 180.02562 * 12 11 9 43 43 H 1.08997 * 109.47426 * 59.99363 * 19 17 7 44 44 H 1.08997 * 109.46702 * 299.99744 * 19 17 7 45 45 H 1.08005 * 126.03596 * 359.97438 * 21 20 19 46 46 H 1.08997 * 109.47317 * 149.69566 * 24 23 22 47 47 H 1.09004 * 109.46556 * 29.69700 * 24 23 22 48 48 H 1.00891 * 110.99739 * 179.97438 * 25 24 23 49 49 H 1.00904 * 110.99888 * 303.95301 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0083 3.6090 1.2441 6 6 3.5648 1.4443 -0.1258 7 7 3.9493 0.8606 -1.4133 8 6 4.3158 -0.5554 -1.4953 9 6 5.7985 -0.7044 -1.2708 10 1 6.4070 0.1684 -1.0851 11 6 6.3781 -1.9551 -1.3014 12 7 5.6372 -3.0179 -1.5269 13 14 8.2159 -2.1398 -1.0224 14 1 8.4804 -2.3256 0.4270 15 1 8.7140 -3.3212 -1.7717 16 1 8.9143 -0.9197 -1.5005 17 6 3.9659 1.6263 -2.5223 18 8 3.5777 2.7742 -2.4725 19 6 4.4668 1.0561 -3.8242 20 6 4.3808 2.1083 -4.8996 21 6 5.4324 2.4751 -5.6380 22 16 4.8952 3.7148 -6.7690 23 6 3.3116 3.6226 -6.1309 24 6 2.1416 4.4462 -6.6040 25 7 2.0731 5.6911 -5.8272 26 7 3.2620 2.7418 -5.1892 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6054 1.9816 -0.8418 33 1 0.5592 2.0284 1.4509 34 1 2.1573 1.6558 2.1404 35 1 3.0731 3.7070 1.0331 36 1 1.4352 4.0944 0.4542 37 1 1.7823 4.0817 2.2000 38 1 3.9969 0.8558 0.6835 39 1 3.9330 2.4686 -0.0668 40 1 3.7747 -1.1155 -0.7326 41 1 4.0570 -0.9412 -2.4814 42 1 6.0449 -3.8978 -1.5481 43 1 3.8546 0.1992 -4.1050 44 1 5.5032 0.7395 -3.7073 45 1 6.4340 2.0788 -5.5582 46 1 1.2200 3.8808 -6.4664 47 1 2.2680 4.6835 -7.6603 48 1 1.2964 6.2615 -6.1261 49 1 2.0208 5.4979 -4.8383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577069620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:36 Heat of formation + Delta-G solvation = -14.191055 kcal Electronic energy + Delta-G solvation = -28271.970979 eV Core-core repulsion = 24553.031789 eV Total energy + Delta-G solvation = -3718.939190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97512 -38.86575 -36.75895 -34.95819 -34.47085 -32.44286 -31.50333 -31.43050 -28.85960 -27.61794 -26.60282 -26.43584 -23.95852 -23.11345 -22.30985 -21.93766 -19.74630 -19.42771 -18.54534 -17.28076 -16.62911 -16.28836 -15.89719 -15.65840 -15.08856 -14.84072 -14.63388 -14.40492 -14.23413 -13.92378 -13.77691 -13.57349 -13.23242 -12.97583 -12.68481 -12.57250 -12.42424 -12.25409 -12.17265 -11.72408 -11.58755 -11.48874 -11.43814 -11.11436 -11.05456 -10.98447 -10.86988 -10.69389 -10.34453 -10.18086 -10.01534 -9.88855 -9.67069 -9.42259 -9.22396 -8.96379 -8.87025 -8.59648 -8.41149 -7.60130 -6.19437 -4.27219 0.92465 1.58976 1.95498 3.03868 3.20700 3.28537 3.31061 3.54299 4.05418 4.14721 4.32974 4.61582 4.95889 5.10923 5.13090 5.20332 5.27545 5.29854 5.36605 5.44238 5.51809 5.55071 5.63860 5.72191 5.74060 5.95980 5.98063 6.04872 6.06977 6.12874 6.15520 6.20562 6.28442 6.36053 6.43278 6.46968 6.50198 6.65182 6.70368 6.85173 6.86090 6.88783 7.19762 7.23983 7.60876 7.76160 8.04883 8.06103 8.41298 8.80076 9.12895 9.41372 10.86646 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007527 B = 0.004516 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.224445 B = 6199.214680 C = 8927.748364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.151 4.151 6 C 0.129 3.871 7 N -0.595 5.595 8 C 0.235 3.765 9 C -0.539 4.539 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.523 3.477 18 O -0.556 6.556 19 C -0.065 4.065 20 C 0.099 3.901 21 C -0.257 4.257 22 S 0.113 5.887 23 C 0.042 3.958 24 C 0.144 3.856 25 N -0.844 5.844 26 N -0.437 5.437 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.177 0.823 46 H 0.057 0.943 47 H 0.089 0.911 48 H 0.346 0.654 49 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 10.320 -5.465 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.208 4.208 6 C 0.006 3.994 7 N -0.326 5.326 8 C 0.115 3.885 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.310 3.690 18 O -0.436 6.436 19 C -0.107 4.107 20 C -0.033 4.033 21 C -0.396 4.396 22 S 0.366 5.634 23 C -0.237 4.237 24 C 0.010 3.990 25 N -0.377 5.377 26 N -0.151 5.151 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.194 0.806 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.159 0.841 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.666 11.350 -6.304 14.595 hybrid contribution 0.359 -1.476 1.239 1.960 sum -6.308 9.874 -5.065 12.764 Atomic orbital electron populations 1.21808 0.96774 1.00922 1.01140 1.21624 0.94894 0.96552 1.02760 1.21568 0.96685 0.96000 0.97766 1.21550 1.00797 0.95490 0.97550 1.21800 1.02099 0.96270 1.00670 1.21335 0.93291 0.98769 0.86013 1.48134 1.65248 1.12726 1.06483 1.19496 0.95610 0.74906 0.98463 1.21532 0.93191 0.93037 1.50000 0.92131 1.24929 0.98284 0.95672 0.94802 1.69914 1.35709 0.98548 1.48649 0.86563 0.85132 0.77783 0.78407 1.20549 1.21089 1.19786 1.20030 0.78064 0.85702 0.85183 1.90608 1.48793 1.18413 1.85785 1.20289 1.05300 0.95404 0.89685 1.19828 0.87059 0.98406 0.98039 1.26847 1.04674 1.04628 1.03430 1.83669 1.06328 1.36701 1.36655 1.26745 0.98757 1.00172 0.98038 1.20151 0.92425 0.88900 0.97544 1.58682 1.51654 1.17576 1.09764 1.66010 1.29556 1.06975 1.12567 0.93239 0.93076 0.93256 0.90960 0.92214 0.90928 0.92100 0.92213 0.92333 0.92956 0.93513 0.90701 0.91448 0.94118 0.94712 0.92535 0.87683 0.86387 0.80554 0.92514 0.89273 0.84075 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.68 37.16 0.36 -1.67 16 2 C -0.12 -1.93 4.71 -26.73 -0.13 -2.06 16 3 C -0.10 -1.63 2.02 -90.62 -0.18 -1.81 16 4 C -0.12 -1.57 5.28 -26.73 -0.14 -1.71 16 5 C -0.15 -2.00 9.77 37.16 0.36 -1.64 16 6 C 0.13 2.39 4.61 -4.04 -0.02 2.38 16 7 N -0.60 -12.27 2.14 -175.06 -0.37 -12.64 16 8 C 0.24 5.37 3.92 -5.19 -0.02 5.35 16 9 C -0.54 -13.52 9.15 -34.44 -0.32 -13.83 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 13 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.52 10.96 7.58 -10.99 -0.08 10.88 16 18 O -0.56 -12.61 15.01 5.56 0.08 -12.53 16 19 C -0.06 -1.22 4.86 -29.04 -0.14 -1.36 16 20 C 0.10 1.76 5.63 -84.23 -0.47 1.29 16 21 C -0.26 -3.94 11.07 29.12 0.32 -3.62 16 22 S 0.11 1.49 23.18 -107.50 -2.49 -1.00 16 23 C 0.04 0.62 6.90 -13.45 -0.09 0.53 16 24 C 0.14 1.61 7.36 -4.97 -0.04 1.58 16 25 N -0.84 -9.12 9.61 -11.41 -0.11 -9.23 16 26 N -0.44 -7.78 9.68 -8.06 -0.08 -7.86 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.32 5.96 -51.93 -0.31 1.01 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.33 7.97 -51.93 -0.41 0.91 16 33 H 0.06 0.76 6.30 -51.93 -0.33 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.83 6.37 -51.94 -0.33 0.50 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 39 H 0.07 1.28 5.93 -51.93 -0.31 0.97 16 40 H 0.04 0.98 6.62 -51.93 -0.34 0.63 16 41 H 0.03 0.83 6.48 -51.93 -0.34 0.49 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.11 1.95 7.25 -51.93 -0.38 1.57 16 44 H 0.12 2.22 7.80 -51.93 -0.40 1.82 16 45 H 0.18 2.33 8.06 -52.48 -0.42 1.91 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.35 2.68 9.08 -39.30 -0.36 2.32 16 49 H 0.35 4.40 8.99 -39.29 -0.35 4.04 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -29.31 404.29 -9.81 -39.12 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.96 Total: 10.23 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.68 Total: -4.09 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.17 Total: -52.88 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.49 Total: -1.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.31 -9.81 -39.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577069620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.924 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds