Wall clock time and date at job start Tue Mar 31 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47477 * 299.99880 * 3 2 1 6 6 H 1.48504 * 109.46669 * 59.99879 * 3 2 1 7 7 C 1.37882 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47066 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99693 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00117 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00020 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.54924 * 35.20581 * 16 15 13 18 18 C 1.53148 * 109.55288 * 274.99819 * 16 15 13 19 19 C 1.53056 * 109.40414 * 181.42181 * 18 16 15 20 20 O 1.43046 * 109.44081 * 59.33280 * 19 18 16 21 21 C 1.42574 * 113.85550 * 301.27194 * 20 19 18 22 22 C 1.53399 * 113.62011 * 188.18667 * 21 20 19 23 23 C 1.53848 * 86.97728 * 89.44012 * 22 21 20 24 24 C 1.50696 * 113.60771 * 139.73590 * 23 22 21 25 25 O 1.20833 * 119.99655 * 359.97438 * 24 23 22 26 26 O 1.34222 * 120.00432 * 180.27449 * 24 23 22 27 27 C 1.53421 * 113.57195 * 286.10984 * 21 20 19 28 28 C 1.52813 * 112.93964 * 57.09150 * 21 20 19 29 29 H 0.96996 * 119.99527 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47737 * 59.99784 * 9 7 2 31 31 H 1.09009 * 109.47141 * 299.99535 * 9 7 2 32 32 H 1.09001 * 109.47531 * 59.99629 * 10 9 7 33 33 H 1.08998 * 109.47083 * 299.99422 * 10 9 7 34 34 H 1.09001 * 109.47053 * 59.99487 * 11 10 9 35 35 H 1.08998 * 109.46748 * 299.99777 * 11 10 9 36 36 H 1.09001 * 109.47507 * 59.99897 * 12 11 10 37 37 H 1.09007 * 109.47414 * 299.99740 * 12 11 10 38 38 H 0.97007 * 120.00360 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.48029 * 61.44663 * 18 16 15 40 40 H 1.08995 * 109.48956 * 301.40386 * 18 16 15 41 41 H 1.09003 * 109.47416 * 299.34057 * 19 18 16 42 42 H 1.08994 * 109.47819 * 179.32824 * 19 18 16 43 43 H 1.09003 * 113.62624 * 334.91878 * 22 21 20 44 44 H 1.08999 * 113.63078 * 203.95742 * 22 21 20 45 45 H 1.09009 * 113.60372 * 270.51998 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 26 24 23 47 47 H 1.09003 * 113.63228 * 155.99282 * 27 21 20 48 48 H 1.08997 * 113.62924 * 25.04350 * 27 21 20 49 49 H 1.08998 * 109.56904 * 65.90496 * 28 21 20 50 50 H 1.09007 * 109.56419 * 186.24443 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7209 -7.4551 0.0031 14 8 0.5082 -7.4551 0.0031 15 7 2.3948 -8.6223 0.0031 16 6 1.6623 -9.8910 0.0037 17 1 0.7528 -9.7874 -0.5882 18 6 1.2977 -10.2717 1.4416 19 6 0.5638 -11.6149 1.4415 20 8 1.4065 -12.6178 0.8669 21 6 1.8146 -12.3321 -0.4689 22 6 2.5492 -13.4943 -1.1491 23 6 1.1695 -13.9806 -1.6253 24 6 1.1680 -14.5006 -3.0397 25 8 2.1910 -14.5054 -3.6826 26 8 0.0290 -14.9528 -3.5874 27 6 0.6990 -12.5209 -1.5050 28 6 2.5420 -10.9942 -0.5962 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 2.8713 -3.6039 0.8922 33 1 2.8725 -3.6048 -0.8877 34 1 0.8539 -5.0455 -0.8877 35 1 0.8533 -5.0442 0.8922 36 1 3.1011 -6.0918 0.8931 37 1 3.1012 -6.0927 -0.8869 38 1 3.3649 -8.6224 0.0027 39 1 0.6514 -9.5045 1.8680 40 1 2.2065 -10.3542 2.0375 41 1 -0.3510 -11.5291 0.8550 42 1 0.3142 -11.8928 2.4654 43 1 3.0343 -14.1742 -0.4487 44 1 3.2060 -13.1810 -1.9606 45 1 0.6798 -14.6576 -0.9251 46 1 0.0768 -15.2725 -4.4987 47 1 0.8444 -11.9385 -2.4148 48 1 -0.3039 -12.4178 -1.0908 49 1 3.4881 -11.0403 -0.0568 50 1 2.7300 -10.7795 -1.6482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:51 Heat of formation + Delta-G solvation = -181.804201 kcal Electronic energy + Delta-G solvation = -29027.035431 eV Core-core repulsion = 24825.782367 eV Total energy + Delta-G solvation = -4201.253064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70532 -40.35955 -39.50729 -37.05341 -36.36162 -35.57178 -34.80539 -32.69398 -31.91291 -30.51668 -29.59061 -26.57289 -26.45063 -25.58028 -24.32312 -22.89330 -21.91542 -20.72132 -20.32342 -19.96917 -19.62861 -18.60421 -17.41130 -17.07916 -16.64622 -16.52702 -16.20431 -16.03299 -15.85306 -15.59984 -15.07854 -14.48329 -14.43564 -14.35557 -14.17975 -13.76763 -13.64061 -13.47702 -13.05830 -12.61311 -12.41394 -12.25740 -12.20016 -12.13106 -11.90301 -11.70113 -11.59735 -11.54949 -11.43486 -11.33524 -10.99700 -10.95677 -10.60444 -10.54214 -10.48452 -10.41565 -10.10553 -9.71899 -9.61784 -9.23695 -9.21266 -8.96812 -8.30848 -5.95454 -3.97871 1.67721 2.53434 2.68092 2.99777 3.08073 3.32981 3.40196 3.44149 3.68687 3.87124 3.96655 4.30251 4.40154 4.47996 4.49448 4.60520 4.71398 4.80732 4.85677 4.93358 5.02877 5.09070 5.16046 5.25961 5.30728 5.33085 5.34611 5.37312 5.39088 5.40190 5.53458 5.57280 5.70648 5.81108 5.89274 6.00601 6.13440 6.27648 6.31250 6.54471 6.73417 6.83688 7.01625 7.19934 7.39344 7.40051 7.74367 7.89990 8.06048 8.22714 8.47992 9.10109 9.65843 11.15886 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.001576 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.797388 B =17757.056559 C =18185.408721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.534 6.534 15 N -0.735 5.735 16 C 0.145 3.855 17 H 0.090 0.910 18 C -0.168 4.168 19 C 0.063 3.937 20 O -0.354 6.354 21 C 0.101 3.899 22 C -0.101 4.101 23 C -0.104 4.104 24 C 0.488 3.512 25 O -0.515 6.515 26 O -0.515 6.515 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.400 0.600 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.410 0.590 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -34.067 -1.561 34.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.410 6.410 15 N -0.387 5.387 16 C 0.040 3.960 17 H 0.108 0.892 18 C -0.207 4.207 19 C -0.014 4.014 20 O -0.272 6.272 21 C 0.060 3.940 22 C -0.138 4.138 23 C -0.123 4.123 24 C 0.331 3.669 25 O -0.403 6.403 26 O -0.326 6.326 27 C -0.184 4.184 28 C -0.178 4.178 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.269 0.731 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.637 -33.951 -1.238 34.168 hybrid contribution 0.794 0.934 -0.709 1.416 sum 4.432 -33.017 -1.947 33.370 Atomic orbital electron populations 1.69984 1.06045 1.26384 1.51031 1.25048 0.94845 0.99245 0.95472 0.86556 0.80080 0.83923 0.77544 1.19784 1.21055 1.21054 1.21326 0.93030 0.91198 1.50266 0.92693 1.19105 0.94074 0.91304 0.97314 1.21653 0.99076 0.94016 1.00066 1.21447 0.97009 0.92724 1.02917 1.21804 1.00110 0.91998 1.03997 1.21134 0.88490 0.85593 0.74684 1.90701 1.14220 1.87646 1.48426 1.46163 1.10160 1.05302 1.77093 1.20898 0.96071 0.82871 0.96204 0.89238 1.22599 1.02233 0.98178 0.97650 1.22624 0.92509 0.87062 0.99184 1.87929 1.68188 1.45190 1.25929 1.21994 0.94614 0.94232 0.83173 1.23028 0.94753 0.96253 0.99811 1.22465 1.01141 0.98385 0.90333 1.23371 0.80460 0.73359 0.89733 1.90729 1.34019 1.52165 1.63350 1.84557 1.38014 1.74871 1.35192 1.23551 1.00919 0.93223 1.00679 1.22308 0.99559 0.93259 1.02687 0.93108 0.96586 0.96591 0.93486 0.93484 0.91839 0.91831 0.89133 0.89145 0.76599 0.89858 0.90696 0.92475 0.88076 0.89061 0.87024 0.85185 0.73115 0.88389 0.89182 0.89925 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 13 C 0.51 6.71 7.80 -10.98 -0.09 6.63 16 14 O -0.53 -9.21 15.65 5.56 0.09 -9.13 16 15 N -0.73 -6.67 5.09 -53.57 -0.27 -6.94 16 16 C 0.14 1.22 2.46 -67.69 -0.17 1.05 16 17 H 0.09 0.93 7.55 -51.93 -0.39 0.53 16 18 C -0.17 -1.36 5.66 -26.63 -0.15 -1.51 16 19 C 0.06 0.43 6.73 37.19 0.25 0.68 16 20 O -0.35 -2.62 10.45 -35.23 -0.37 -2.99 16 21 C 0.10 0.63 1.03 -90.29 -0.09 0.54 16 22 C -0.10 -0.59 6.79 -26.08 -0.18 -0.77 16 23 C -0.10 -0.61 4.20 -90.90 -0.38 -0.99 16 24 C 0.49 3.53 7.85 36.00 0.28 3.81 16 25 O -0.51 -5.20 16.66 -18.76 -0.31 -5.51 16 26 O -0.51 -2.82 13.42 -39.24 -0.53 -3.34 16 27 C -0.15 -0.88 6.66 -26.08 -0.17 -1.05 16 28 C -0.14 -0.87 4.74 -26.66 -0.13 -0.99 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.40 2.53 8.61 -40.82 -0.35 2.18 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.38 7.21 -51.93 -0.37 0.01 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.11 0.69 7.38 -51.93 -0.38 0.30 16 45 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.41 0.64 9.10 45.56 0.41 1.05 16 47 H 0.10 0.59 7.97 -51.93 -0.41 0.18 16 48 H 0.09 0.53 7.26 -51.93 -0.38 0.15 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.49 8.04 -51.92 -0.42 0.08 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -36.53 407.31 -9.08 -45.61 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.75 Total: -1.61 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.79 Total: -12.33 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.46 Total: -33.72 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.12 Total: -20.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.53 -9.08 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.194 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds