Wall clock time and date at job start Tue Mar 31 2020 22:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47477 * 299.99880 * 3 2 1 6 6 H 1.48504 * 109.46669 * 59.99879 * 3 2 1 7 7 C 1.37882 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47042 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47066 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99693 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00117 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00020 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.54924 * 35.20581 * 16 15 13 18 18 C 1.53148 * 109.55288 * 274.99819 * 16 15 13 19 19 C 1.53056 * 109.40414 * 181.42181 * 18 16 15 20 20 O 1.43046 * 109.44081 * 59.33280 * 19 18 16 21 21 C 1.42574 * 113.85550 * 301.27194 * 20 19 18 22 22 C 1.53399 * 113.62011 * 188.18667 * 21 20 19 23 23 C 1.53848 * 86.97728 * 89.44012 * 22 21 20 24 24 C 1.50696 * 113.60771 * 139.73590 * 23 22 21 25 25 O 1.20833 * 119.99655 * 359.97438 * 24 23 22 26 26 O 1.34222 * 120.00432 * 180.27449 * 24 23 22 27 27 C 1.53421 * 113.57195 * 286.10984 * 21 20 19 28 28 C 1.52813 * 112.93964 * 57.09150 * 21 20 19 29 29 H 0.96996 * 119.99527 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47737 * 59.99784 * 9 7 2 31 31 H 1.09009 * 109.47141 * 299.99535 * 9 7 2 32 32 H 1.09001 * 109.47531 * 59.99629 * 10 9 7 33 33 H 1.08998 * 109.47083 * 299.99422 * 10 9 7 34 34 H 1.09001 * 109.47053 * 59.99487 * 11 10 9 35 35 H 1.08998 * 109.46748 * 299.99777 * 11 10 9 36 36 H 1.09001 * 109.47507 * 59.99897 * 12 11 10 37 37 H 1.09007 * 109.47414 * 299.99740 * 12 11 10 38 38 H 0.97007 * 120.00360 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.48029 * 61.44663 * 18 16 15 40 40 H 1.08995 * 109.48956 * 301.40386 * 18 16 15 41 41 H 1.09003 * 109.47416 * 299.34057 * 19 18 16 42 42 H 1.08994 * 109.47819 * 179.32824 * 19 18 16 43 43 H 1.09003 * 113.62624 * 334.91878 * 22 21 20 44 44 H 1.08999 * 113.63078 * 203.95742 * 22 21 20 45 45 H 1.09009 * 113.60372 * 270.51998 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 26 24 23 47 47 H 1.09003 * 113.63228 * 155.99282 * 27 21 20 48 48 H 1.08997 * 113.62924 * 25.04350 * 27 21 20 49 49 H 1.08998 * 109.56904 * 65.90496 * 28 21 20 50 50 H 1.09007 * 109.56419 * 186.24443 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7209 -7.4551 0.0031 14 8 0.5082 -7.4551 0.0031 15 7 2.3948 -8.6223 0.0031 16 6 1.6623 -9.8910 0.0037 17 1 0.7528 -9.7874 -0.5882 18 6 1.2977 -10.2717 1.4416 19 6 0.5638 -11.6149 1.4415 20 8 1.4065 -12.6178 0.8669 21 6 1.8146 -12.3321 -0.4689 22 6 2.5492 -13.4943 -1.1491 23 6 1.1695 -13.9806 -1.6253 24 6 1.1680 -14.5006 -3.0397 25 8 2.1910 -14.5054 -3.6826 26 8 0.0290 -14.9528 -3.5874 27 6 0.6990 -12.5209 -1.5050 28 6 2.5420 -10.9942 -0.5962 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 2.8713 -3.6039 0.8922 33 1 2.8725 -3.6048 -0.8877 34 1 0.8539 -5.0455 -0.8877 35 1 0.8533 -5.0442 0.8922 36 1 3.1011 -6.0918 0.8931 37 1 3.1012 -6.0927 -0.8869 38 1 3.3649 -8.6224 0.0027 39 1 0.6514 -9.5045 1.8680 40 1 2.2065 -10.3542 2.0375 41 1 -0.3510 -11.5291 0.8550 42 1 0.3142 -11.8928 2.4654 43 1 3.0343 -14.1742 -0.4487 44 1 3.2060 -13.1810 -1.9606 45 1 0.6798 -14.6576 -0.9251 46 1 0.0768 -15.2725 -4.4987 47 1 0.8444 -11.9385 -2.4148 48 1 -0.3039 -12.4178 -1.0908 49 1 3.4881 -11.0403 -0.0568 50 1 2.7300 -10.7795 -1.6482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:50 Heat of formation + Delta-G solvation = -207.222015 kcal Electronic energy + Delta-G solvation = -29028.137630 eV Core-core repulsion = 24825.782367 eV Total energy + Delta-G solvation = -4202.355263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24532 -41.07095 -40.35927 -37.62946 -36.98850 -36.65803 -36.14103 -34.60872 -32.87062 -31.25778 -31.01660 -27.69502 -27.02537 -26.66875 -25.12210 -24.16873 -22.91624 -21.75653 -21.41009 -21.11865 -20.16918 -19.14522 -18.42785 -18.10555 -17.80921 -17.30636 -17.09793 -16.90373 -16.67886 -16.53309 -16.36173 -15.80815 -15.40217 -15.02977 -14.88443 -14.76381 -14.53361 -14.45549 -14.09483 -13.74240 -13.57123 -13.52171 -13.25892 -12.91985 -12.84836 -12.78311 -12.66743 -12.49807 -12.31408 -12.15360 -12.13983 -12.09820 -11.99755 -11.90200 -11.54231 -11.37480 -11.35925 -11.23290 -11.11810 -10.79233 -10.55795 -10.40854 -10.08434 -8.18947 -6.31030 1.12991 1.40447 1.41297 1.54791 1.66591 2.07763 2.20932 2.41931 2.55685 3.13817 3.21232 3.37941 3.47627 3.73940 3.80138 3.85624 3.98081 4.02509 4.09240 4.16365 4.18529 4.37095 4.37843 4.43198 4.62946 4.65876 4.67991 4.69495 4.74026 4.78886 4.83515 4.86100 4.88501 4.92123 5.02077 5.04159 5.14523 5.19308 5.20638 5.33729 5.37840 5.50594 5.58188 5.58638 5.78395 5.88281 6.20427 6.25459 6.58075 6.87728 6.96387 7.30068 7.38652 8.93433 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.001576 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.797388 B =17757.056559 C =18185.408721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.129 4.129 13 C 0.513 3.487 14 O -0.585 6.585 15 N -0.714 5.714 16 C 0.143 3.857 17 H 0.068 0.932 18 C -0.163 4.163 19 C 0.065 3.935 20 O -0.359 6.359 21 C 0.100 3.900 22 C -0.096 4.096 23 C -0.102 4.102 24 C 0.493 3.507 25 O -0.547 6.547 26 O -0.514 6.514 27 C -0.147 4.147 28 C -0.132 4.132 29 H 0.263 0.737 30 H -0.016 1.016 31 H -0.015 1.015 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.417 0.583 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.426 0.574 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -34.943 -1.416 35.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.169 4.169 13 C 0.301 3.699 14 O -0.465 6.465 15 N -0.367 5.367 16 C 0.038 3.962 17 H 0.086 0.914 18 C -0.202 4.202 19 C -0.012 4.012 20 O -0.277 6.277 21 C 0.059 3.941 22 C -0.134 4.134 23 C -0.121 4.121 24 C 0.336 3.664 25 O -0.438 6.438 26 O -0.327 6.327 27 C -0.184 4.184 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.255 0.745 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.159 0.841 46 H 0.288 0.712 47 H 0.114 0.886 48 H 0.108 0.892 49 H 0.115 0.885 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.229 -34.876 -1.101 35.445 hybrid contribution -0.083 1.152 -0.776 1.391 sum 6.146 -33.724 -1.877 34.331 Atomic orbital electron populations 1.70137 1.08050 1.27668 1.51938 1.26096 0.95795 1.03740 0.94806 0.85330 0.79191 0.78412 0.77675 1.18104 1.20489 1.20471 1.21794 0.93766 0.92244 1.50132 0.91571 1.19071 0.94724 0.93838 0.94326 1.21453 0.97811 0.92813 1.01287 1.21236 0.97505 0.93660 1.00969 1.21678 0.98935 0.89620 1.06646 1.21162 0.87806 0.86693 0.74241 1.90693 1.16376 1.88331 1.51106 1.45967 1.11048 1.04499 1.75167 1.20953 0.95812 0.83061 0.96386 0.91428 1.22532 1.02231 0.98204 0.97215 1.22642 0.92224 0.86355 0.99984 1.87926 1.68226 1.45225 1.26361 1.22034 0.94778 0.94447 0.82849 1.22989 0.94667 0.96013 0.99686 1.22523 1.01358 0.98371 0.89873 1.23576 0.80190 0.72605 0.89982 1.90717 1.35145 1.53704 1.64247 1.84528 1.37194 1.74446 1.36581 1.23548 1.00943 0.93363 1.00568 1.22271 0.99531 0.92085 1.03104 0.92868 0.99711 0.99688 0.92093 0.92115 0.93940 0.93894 0.86405 0.86423 0.74511 0.92149 0.89868 0.92575 0.86779 0.88409 0.87233 0.84102 0.71222 0.88591 0.89213 0.88459 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.07 3.61 7.74 -2.92 -0.02 3.59 16 9 C 0.02 0.97 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.91 5.15 30.60 0.16 -3.75 16 11 C -0.10 -3.40 4.50 30.59 0.14 -3.27 16 12 C -0.13 -3.05 5.70 29.85 0.17 -2.87 16 13 C 0.51 12.99 7.80 87.66 0.68 13.67 16 14 O -0.59 -20.76 15.65 -3.02 -0.05 -20.81 16 15 N -0.71 -11.70 5.09 -441.78 -2.25 -13.95 16 16 C 0.14 2.26 2.46 45.15 0.11 2.37 16 17 H 0.07 1.41 7.55 -2.39 -0.02 1.39 16 18 C -0.16 -2.51 5.66 30.66 0.17 -2.34 16 19 C 0.06 0.82 6.73 72.00 0.48 1.31 16 20 O -0.36 -4.69 10.45 -148.98 -1.56 -6.25 16 21 C 0.10 1.09 1.03 -10.58 -0.01 1.08 16 22 C -0.10 -0.97 6.79 31.01 0.21 -0.76 16 23 C -0.10 -1.07 4.20 -10.97 -0.05 -1.11 16 24 C 0.49 6.64 7.85 71.23 0.56 7.20 16 25 O -0.55 -10.71 16.66 21.94 0.37 -10.34 16 26 O -0.51 -5.02 13.42 -51.34 -0.69 -5.71 16 27 C -0.15 -1.62 6.66 31.02 0.21 -1.41 16 28 C -0.13 -1.38 4.74 30.64 0.15 -1.23 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.42 3.97 8.61 -92.70 -0.80 3.17 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 0.72 7.21 -2.39 -0.02 0.71 16 42 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.11 1.18 7.38 -2.39 -0.02 1.17 16 45 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.43 0.84 9.10 -74.06 -0.67 0.17 16 47 H 0.10 1.10 7.97 -2.39 -0.02 1.08 16 48 H 0.09 0.99 7.26 -2.39 -0.02 0.98 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.09 0.87 8.04 -2.38 -0.02 0.85 16 Total: -1.00 -81.49 407.31 1.44 -80.05 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -0.52 Total: 10.08 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.83 Total: -21.19 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.96 Total: -72.71 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.93 Total: -43.11 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -81.49 1.44 -80.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.168 kcal (2) G-P(sol) polarization free energy of solvation -81.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds