Wall clock time and date at job start Tue Mar 31 2020 23:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47105 * 240.00052 * 2 1 3 5 5 C 1.50697 * 109.47084 * 119.99932 * 2 1 3 6 6 O 1.21279 * 119.99999 * 344.79973 * 5 2 1 7 7 N 1.34777 * 120.00053 * 165.07513 * 5 2 1 8 8 C 1.47427 * 125.64741 * 3.90393 * 7 5 2 9 9 C 1.54907 * 104.83094 * 155.83491 * 8 7 5 10 10 C 1.55155 * 101.58195 * 37.01141 * 9 8 7 11 11 C 1.47025 * 125.64895 * 183.59626 * 7 5 2 12 12 H 1.09002 * 109.88242 * 300.51109 * 11 7 5 13 13 C 1.50703 * 109.87937 * 61.67899 * 11 7 5 14 14 O 1.20826 * 120.00523 * 359.97438 * 13 11 7 15 15 O 1.34230 * 119.99324 * 180.02562 * 13 11 7 16 16 C 1.45201 * 116.99659 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.47148 * 179.97438 * 16 15 13 18 18 C 1.50701 * 112.99933 * 54.12243 * 17 16 15 19 19 H 1.08003 * 119.99612 * 245.12943 * 18 17 16 20 20 C 1.37873 * 120.00369 * 65.13200 * 18 17 16 21 21 N 1.31519 * 119.99605 * 5.23982 * 20 18 17 22 22 Si 1.86792 * 120.00314 * 185.24332 * 20 18 17 23 23 H 1.48501 * 109.47055 * 89.99737 * 22 20 18 24 24 H 1.48504 * 109.47454 * 210.00005 * 22 20 18 25 25 H 1.48504 * 109.47142 * 329.99614 * 22 20 18 26 26 C 1.54036 * 113.81552 * 282.29476 * 17 16 15 27 27 O 1.44448 * 85.42521 * 223.23821 * 26 17 16 28 28 C 1.44173 * 93.38154 * 24.08694 * 27 26 17 29 29 H 1.08998 * 109.47113 * 300.00000 * 1 2 3 30 30 H 1.09002 * 109.46863 * 59.99993 * 1 2 3 31 31 H 1.08992 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47145 * 188.90202 * 3 2 1 33 33 H 1.09006 * 109.47322 * 308.90123 * 3 2 1 34 34 H 1.08997 * 109.47192 * 68.90014 * 3 2 1 35 35 H 1.09000 * 109.47271 * 300.00090 * 4 2 1 36 36 H 1.09002 * 109.47296 * 60.00221 * 4 2 1 37 37 H 1.09002 * 109.47384 * 180.02562 * 4 2 1 38 38 H 1.09006 * 110.36537 * 274.67542 * 8 7 5 39 39 H 1.09000 * 110.36625 * 36.99315 * 8 7 5 40 40 H 1.09000 * 111.00161 * 155.08197 * 9 8 7 41 41 H 1.08993 * 111.00733 * 278.93153 * 9 8 7 42 42 H 1.08996 * 110.72327 * 82.85930 * 10 9 8 43 43 H 1.09005 * 110.72237 * 205.95453 * 10 9 8 44 44 H 1.09003 * 109.47376 * 299.99813 * 16 15 13 45 45 H 1.09002 * 109.47426 * 60.00049 * 16 15 13 46 46 H 0.97006 * 119.99654 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.86591 * 337.33878 * 26 17 16 48 48 H 1.08996 * 113.86215 * 109.05148 * 26 17 16 49 49 H 1.08997 * 113.87030 * 221.77005 * 28 27 26 50 50 H 1.09003 * 113.86255 * 90.06404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 1.2788 -0.9267 2.1558 7 7 3.3202 -1.1004 1.3048 8 6 4.3605 -0.8264 0.2967 9 6 5.6971 -0.8991 1.0764 10 6 5.4154 -2.0567 2.0703 11 6 3.9220 -1.8641 2.4077 12 1 3.8192 -1.3108 3.3411 13 6 3.2491 -3.2072 2.5279 14 8 2.3547 -3.5048 1.7719 15 8 3.6428 -4.0726 3.4755 16 6 2.9497 -5.3472 3.5331 17 6 3.5322 -6.1937 4.6667 18 6 3.5283 -5.4819 5.9950 19 1 4.4622 -5.2310 6.4759 20 6 2.3325 -5.1510 6.5964 21 7 1.1970 -5.5464 6.0635 22 14 2.3252 -4.1412 8.1678 23 1 2.2685 -2.6968 7.8277 24 1 1.1391 -4.5045 8.9842 25 1 3.5623 -4.4196 8.9408 26 6 4.8791 -6.8556 4.3197 27 8 4.3325 -8.0325 4.9543 28 6 2.9681 -7.6258 4.7268 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1183 1.4466 -0.1590 33 1 1.5527 2.0002 -0.7998 34 1 1.8123 1.9083 0.9587 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 4.3372 -1.5830 -0.4877 39 1 4.2234 0.1674 -0.1294 40 1 6.5242 -1.1477 0.4114 41 1 5.8911 0.0330 1.6070 42 1 5.5858 -3.0229 1.5954 43 1 6.0295 -1.9549 2.9651 44 1 1.8887 -5.1760 3.7154 45 1 3.0756 -5.8724 2.5864 46 1 0.3557 -5.3133 6.4864 47 1 5.0509 -6.9713 3.2496 48 1 5.7308 -6.4247 4.8459 49 1 2.3074 -7.8042 5.5751 50 1 2.5551 -7.9771 3.7812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646889330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:20 Heat of formation + Delta-G solvation = -123.165760 kcal Electronic energy + Delta-G solvation = -31937.529267 eV Core-core repulsion = 27738.818956 eV Total energy + Delta-G solvation = -4198.710310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91698 -39.55439 -38.90893 -37.44056 -35.82434 -35.40629 -32.86743 -31.65471 -30.35023 -29.53959 -27.58778 -27.20779 -25.47854 -25.31270 -24.87638 -24.13417 -22.13518 -21.74774 -20.16142 -19.05337 -18.70473 -17.44211 -16.75815 -16.48224 -15.94185 -15.72184 -15.52032 -15.00679 -14.82027 -14.75370 -14.35089 -14.29620 -14.08814 -13.93078 -13.85910 -13.63530 -13.09121 -12.88252 -12.62440 -12.38996 -12.28328 -12.08107 -11.99618 -11.83795 -11.83027 -11.68138 -11.58215 -11.42852 -11.07314 -11.02631 -10.94313 -10.72949 -10.69854 -10.43125 -10.05052 -9.87948 -9.61636 -9.51679 -9.36466 -9.03204 -8.72135 -8.67969 -8.27538 -6.12809 -4.15991 2.59580 2.85358 2.88943 3.30899 3.37849 3.39395 3.55697 4.21367 4.28928 4.38312 4.46341 4.65777 4.68869 4.76950 4.90089 5.05040 5.09886 5.11753 5.16032 5.22454 5.34502 5.43734 5.47470 5.54138 5.56906 5.64115 5.65162 5.73855 5.75253 5.80239 5.87425 5.93586 5.98783 6.07450 6.08894 6.16533 6.19878 6.27238 6.32854 6.40676 6.60676 7.01414 7.16472 7.28134 7.38068 7.42985 7.48526 7.82917 8.20919 8.26810 8.55835 8.80755 9.48147 10.95795 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003657 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.938369 B = 7654.760583 C = 8279.543673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.161 4.161 5 C 0.545 3.455 6 O -0.518 6.518 7 N -0.605 5.605 8 C 0.093 3.907 9 C -0.135 4.135 10 C -0.116 4.116 11 C 0.145 3.855 12 H 0.111 0.889 13 C 0.445 3.555 14 O -0.508 6.508 15 O -0.329 6.329 16 C 0.085 3.915 17 C 0.035 3.965 18 C -0.487 4.487 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.029 3.971 27 O -0.389 6.389 28 C 0.050 3.950 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.033 0.967 46 H 0.265 0.735 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 13.410 -15.548 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.198 4.198 4 C -0.218 4.218 5 C 0.333 3.667 6 O -0.391 6.391 7 N -0.341 5.341 8 C -0.029 4.029 9 C -0.173 4.173 10 C -0.154 4.154 11 C 0.039 3.961 12 H 0.129 0.871 13 C 0.286 3.714 14 O -0.397 6.397 15 O -0.243 6.243 16 C 0.011 3.989 17 C 0.034 3.966 18 C -0.524 4.524 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.048 4.048 27 O -0.308 6.308 28 C -0.027 4.027 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.117 0.883 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.427 12.950 -15.075 20.887 hybrid contribution -0.489 0.476 0.623 0.924 sum 5.938 13.426 -14.452 20.601 Atomic orbital electron populations 1.21676 0.91827 1.03064 1.02015 1.20701 0.97996 0.96082 0.93372 1.21908 1.01183 0.93791 1.02903 1.22312 1.02622 1.01025 0.95836 1.20259 0.79712 0.78083 0.88640 1.90758 1.54366 1.54772 1.39212 1.48244 1.09220 1.54880 1.21733 1.22723 0.86911 1.01634 0.91663 1.22882 0.96795 0.99316 0.98292 1.22576 0.91904 0.99779 1.01181 1.21058 0.93063 0.88677 0.93293 0.87140 1.23635 0.81731 0.87110 0.78943 1.90597 1.28795 1.77281 1.43004 1.86506 1.59515 1.27927 1.50351 1.23425 0.98725 0.79390 0.97337 1.21087 0.89555 0.91338 0.94599 1.20524 0.92923 1.36744 1.02233 0.91610 1.24952 0.95401 0.95451 0.97753 1.69876 0.97550 1.44700 1.40330 0.86486 0.77663 0.80582 0.82731 1.20496 1.21184 1.19681 1.24128 0.99387 0.86007 0.95318 1.89524 1.20076 1.43353 1.77829 1.23913 0.84668 0.94327 0.99810 0.91651 0.92061 0.91927 0.91924 0.91289 0.92018 0.91796 0.91721 0.90664 0.90719 0.89503 0.89257 0.90033 0.89841 0.88233 0.89672 0.94841 0.92533 0.92960 0.90346 0.88310 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 7.87 37.16 0.29 -1.26 16 2 C -0.08 -0.91 0.75 -155.67 -0.12 -1.02 16 3 C -0.14 -1.20 8.36 37.16 0.31 -0.88 16 4 C -0.16 -1.54 7.99 37.16 0.30 -1.24 16 5 C 0.54 8.81 5.65 -10.99 -0.06 8.75 16 6 O -0.52 -11.10 15.50 -4.47 -0.07 -11.17 16 7 N -0.60 -8.45 2.81 -164.32 -0.46 -8.91 16 8 C 0.09 0.82 4.81 -2.53 -0.01 0.81 16 9 C -0.13 -0.98 7.08 -24.58 -0.17 -1.15 16 10 C -0.12 -1.25 6.44 -24.90 -0.16 -1.41 16 11 C 0.14 2.25 3.35 -68.11 -0.23 2.02 16 12 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 13 C 0.45 9.26 6.79 36.01 0.24 9.50 16 14 O -0.51 -11.95 14.94 -23.03 -0.34 -12.29 16 15 O -0.33 -7.44 9.81 -39.26 -0.39 -7.83 16 16 C 0.09 2.06 4.65 37.16 0.17 2.23 16 17 C 0.03 0.86 0.61 -154.58 -0.09 0.76 16 18 C -0.49 -13.12 7.93 -34.44 -0.27 -13.39 16 19 H 0.07 1.77 7.81 -52.48 -0.41 1.35 16 20 C 0.07 1.84 5.25 -17.82 -0.09 1.75 16 21 N -0.89 -25.10 11.30 55.43 0.63 -24.47 16 22 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.03 0.62 8.36 37.64 0.31 0.93 16 27 O -0.39 -9.34 12.41 -35.23 -0.44 -9.78 16 28 C 0.05 1.20 7.92 37.64 0.30 1.50 16 29 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.43 5.67 -51.93 -0.29 0.13 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.60 3.69 -51.93 -0.19 0.41 16 38 H 0.07 0.64 7.00 -51.93 -0.36 0.28 16 39 H 0.09 0.57 4.69 -51.93 -0.24 0.33 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 2.36 7.12 -51.93 -0.37 1.99 16 45 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 48 H 0.08 1.62 8.08 -51.93 -0.42 1.20 16 49 H 0.10 2.56 7.43 -51.93 -0.39 2.18 16 50 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -34.83 392.65 -7.57 -42.41 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.12 Total: 1.66 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 0.72 Total: 7.90 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.17 Total: -33.39 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.24 Total: -41.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.83 -7.57 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.757 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds