Wall clock time and date at job start Tue Mar 31 2020 23:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47105 * 240.00052 * 2 1 3 5 5 C 1.50697 * 109.47084 * 119.99932 * 2 1 3 6 6 O 1.21279 * 119.99999 * 344.79973 * 5 2 1 7 7 N 1.34777 * 120.00053 * 165.07513 * 5 2 1 8 8 C 1.47427 * 125.64741 * 3.90393 * 7 5 2 9 9 C 1.54907 * 104.83094 * 155.83491 * 8 7 5 10 10 C 1.55155 * 101.58195 * 37.01141 * 9 8 7 11 11 C 1.47025 * 125.64895 * 183.59626 * 7 5 2 12 12 H 1.09002 * 109.88242 * 300.51109 * 11 7 5 13 13 C 1.50703 * 109.87937 * 61.67899 * 11 7 5 14 14 O 1.20826 * 120.00523 * 359.97438 * 13 11 7 15 15 O 1.34230 * 119.99324 * 180.02562 * 13 11 7 16 16 C 1.45201 * 116.99659 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.47148 * 179.97438 * 16 15 13 18 18 C 1.50701 * 112.99933 * 54.12243 * 17 16 15 19 19 H 1.08003 * 119.99612 * 245.12943 * 18 17 16 20 20 C 1.37873 * 120.00369 * 65.13200 * 18 17 16 21 21 N 1.31519 * 119.99605 * 5.23982 * 20 18 17 22 22 Si 1.86792 * 120.00314 * 185.24332 * 20 18 17 23 23 H 1.48501 * 109.47055 * 89.99737 * 22 20 18 24 24 H 1.48504 * 109.47454 * 210.00005 * 22 20 18 25 25 H 1.48504 * 109.47142 * 329.99614 * 22 20 18 26 26 C 1.54036 * 113.81552 * 282.29476 * 17 16 15 27 27 O 1.44448 * 85.42521 * 223.23821 * 26 17 16 28 28 C 1.44173 * 93.38154 * 24.08694 * 27 26 17 29 29 H 1.08998 * 109.47113 * 300.00000 * 1 2 3 30 30 H 1.09002 * 109.46863 * 59.99993 * 1 2 3 31 31 H 1.08992 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47145 * 188.90202 * 3 2 1 33 33 H 1.09006 * 109.47322 * 308.90123 * 3 2 1 34 34 H 1.08997 * 109.47192 * 68.90014 * 3 2 1 35 35 H 1.09000 * 109.47271 * 300.00090 * 4 2 1 36 36 H 1.09002 * 109.47296 * 60.00221 * 4 2 1 37 37 H 1.09002 * 109.47384 * 180.02562 * 4 2 1 38 38 H 1.09006 * 110.36537 * 274.67542 * 8 7 5 39 39 H 1.09000 * 110.36625 * 36.99315 * 8 7 5 40 40 H 1.09000 * 111.00161 * 155.08197 * 9 8 7 41 41 H 1.08993 * 111.00733 * 278.93153 * 9 8 7 42 42 H 1.08996 * 110.72327 * 82.85930 * 10 9 8 43 43 H 1.09005 * 110.72237 * 205.95453 * 10 9 8 44 44 H 1.09003 * 109.47376 * 299.99813 * 16 15 13 45 45 H 1.09002 * 109.47426 * 60.00049 * 16 15 13 46 46 H 0.97006 * 119.99654 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.86591 * 337.33878 * 26 17 16 48 48 H 1.08996 * 113.86215 * 109.05148 * 26 17 16 49 49 H 1.08997 * 113.87030 * 221.77005 * 28 27 26 50 50 H 1.09003 * 113.86255 * 90.06404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 1.2788 -0.9267 2.1558 7 7 3.3202 -1.1004 1.3048 8 6 4.3605 -0.8264 0.2967 9 6 5.6971 -0.8991 1.0764 10 6 5.4154 -2.0567 2.0703 11 6 3.9220 -1.8641 2.4077 12 1 3.8192 -1.3108 3.3411 13 6 3.2491 -3.2072 2.5279 14 8 2.3547 -3.5048 1.7719 15 8 3.6428 -4.0726 3.4755 16 6 2.9497 -5.3472 3.5331 17 6 3.5322 -6.1937 4.6667 18 6 3.5283 -5.4819 5.9950 19 1 4.4622 -5.2310 6.4759 20 6 2.3325 -5.1510 6.5964 21 7 1.1970 -5.5464 6.0635 22 14 2.3252 -4.1412 8.1678 23 1 2.2685 -2.6968 7.8277 24 1 1.1391 -4.5045 8.9842 25 1 3.5623 -4.4196 8.9408 26 6 4.8791 -6.8556 4.3197 27 8 4.3325 -8.0325 4.9543 28 6 2.9681 -7.6258 4.7268 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1183 1.4466 -0.1590 33 1 1.5527 2.0002 -0.7998 34 1 1.8123 1.9083 0.9587 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 4.3372 -1.5830 -0.4877 39 1 4.2234 0.1674 -0.1294 40 1 6.5242 -1.1477 0.4114 41 1 5.8911 0.0330 1.6070 42 1 5.5858 -3.0229 1.5954 43 1 6.0295 -1.9549 2.9651 44 1 1.8887 -5.1760 3.7154 45 1 3.0756 -5.8724 2.5864 46 1 0.3557 -5.3133 6.4864 47 1 5.0509 -6.9713 3.2496 48 1 5.7308 -6.4247 4.8459 49 1 2.3074 -7.8042 5.5751 50 1 2.5551 -7.9771 3.7812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646889330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:19 Heat of formation + Delta-G solvation = -146.090583 kcal Electronic energy + Delta-G solvation = -31938.523362 eV Core-core repulsion = 27738.818956 eV Total energy + Delta-G solvation = -4199.704405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17440 -41.26772 -40.58810 -38.57108 -37.33316 -36.73375 -34.92505 -32.65857 -32.00237 -30.85916 -28.28796 -28.14554 -27.38293 -27.15231 -26.27194 -25.70580 -23.47306 -22.51751 -21.44209 -20.93472 -19.95314 -18.89747 -18.40547 -17.90333 -17.49013 -17.31008 -16.96386 -16.72711 -16.38964 -16.21056 -16.08856 -15.77379 -15.45912 -14.93570 -14.84333 -14.67565 -14.39511 -14.08220 -13.94387 -13.84454 -13.65152 -13.43490 -13.08305 -13.08085 -12.93974 -12.89037 -12.80821 -12.64290 -12.56296 -12.38676 -12.35745 -11.95671 -11.90226 -11.80565 -11.70663 -11.45965 -11.33639 -11.24565 -10.95801 -10.77549 -10.73995 -10.25399 -9.85300 -8.23343 -6.31422 1.19455 1.35206 1.35892 1.38275 1.47010 1.78000 2.10196 2.36268 2.96624 3.18850 3.30038 3.45854 3.55873 3.71313 3.81220 3.88802 4.00189 4.09710 4.15150 4.21508 4.24345 4.40177 4.44140 4.44387 4.52885 4.55700 4.64413 4.68961 4.72329 4.76827 4.80555 4.83256 4.89563 4.94066 5.01365 5.07313 5.11825 5.16135 5.16959 5.19844 5.29646 5.32136 5.35827 5.42923 5.46970 5.65320 5.67914 6.18155 6.40035 6.68056 6.81569 7.10656 7.35042 8.83665 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003657 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.938369 B = 7654.760583 C = 8279.543673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.134 4.134 4 C -0.156 4.156 5 C 0.530 3.470 6 O -0.589 6.589 7 N -0.604 5.604 8 C 0.081 3.919 9 C -0.117 4.117 10 C -0.112 4.112 11 C 0.141 3.859 12 H 0.099 0.901 13 C 0.437 3.563 14 O -0.543 6.543 15 O -0.336 6.336 16 C 0.098 3.902 17 C 0.018 3.982 18 C -0.496 4.496 19 H 0.064 0.936 20 C 0.020 3.980 21 N -0.914 5.914 22 Si 0.951 3.049 23 H -0.284 1.284 24 H -0.285 1.285 25 H -0.258 1.258 26 C 0.042 3.958 27 O -0.401 6.401 28 C 0.054 3.946 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.261 0.739 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.574 15.565 -17.852 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 C -0.191 4.191 4 C -0.212 4.212 5 C 0.321 3.679 6 O -0.469 6.469 7 N -0.338 5.338 8 C -0.039 4.039 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.034 3.966 12 H 0.117 0.883 13 C 0.279 3.721 14 O -0.433 6.433 15 O -0.250 6.250 16 C 0.024 3.976 17 C 0.017 3.983 18 C -0.533 4.533 19 H 0.082 0.918 20 C -0.180 4.180 21 N -0.552 5.552 22 Si 0.777 3.223 23 H -0.210 1.210 24 H -0.211 1.211 25 H -0.182 1.182 26 C -0.034 4.034 27 O -0.320 6.320 28 C -0.024 4.024 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.091 0.909 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.753 15.113 -17.411 25.033 hybrid contribution -1.517 -0.207 1.304 2.011 sum 8.236 14.906 -16.107 23.440 Atomic orbital electron populations 1.21699 0.92898 1.01174 1.02811 1.20818 0.97249 0.97961 0.91914 1.21912 1.02903 0.91121 1.03166 1.22321 1.03963 0.99225 0.95732 1.21325 0.79903 0.77491 0.89217 1.90714 1.56425 1.57772 1.41942 1.48486 1.09657 1.53314 1.22338 1.23172 0.86191 1.03615 0.90951 1.22939 0.96665 0.98364 0.97497 1.22670 0.87912 1.01413 1.02974 1.21327 0.95895 0.85288 0.94045 0.88322 1.24871 0.81281 0.88320 0.77581 1.90572 1.30327 1.78205 1.44241 1.86510 1.59363 1.27764 1.51377 1.23077 0.96262 0.80461 0.97836 1.21186 0.91940 0.91373 0.93816 1.20815 0.92701 1.36600 1.03224 0.91762 1.25659 0.95277 0.96518 1.00532 1.70002 0.97791 1.45900 1.41503 0.85649 0.78127 0.78731 0.79837 1.21033 1.21072 1.18158 1.24228 0.97981 0.84060 0.97153 1.89498 1.19827 1.44184 1.78491 1.23799 0.84622 0.94288 0.99646 0.93605 0.88361 0.95191 0.89491 0.88518 0.93594 0.94902 0.88592 0.88521 0.89930 0.86337 0.85721 0.88389 0.90102 0.86858 0.94161 0.93481 0.93042 0.89877 0.89096 0.90878 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 7.87 71.98 0.57 -2.60 16 2 C -0.08 -1.69 0.75 -52.93 -0.04 -1.73 16 3 C -0.13 -1.86 8.36 71.98 0.60 -1.26 16 4 C -0.16 -2.60 7.99 71.98 0.58 -2.03 16 5 C 0.53 17.58 5.65 87.66 0.50 18.08 16 6 O -0.59 -27.24 15.50 6.56 0.10 -27.14 16 7 N -0.60 -16.43 2.81 -792.19 -2.22 -18.66 16 8 C 0.08 1.13 4.81 86.85 0.42 1.55 16 9 C -0.12 -1.15 7.08 31.98 0.23 -0.92 16 10 C -0.11 -2.11 6.44 31.78 0.20 -1.91 16 11 C 0.14 4.38 3.35 44.59 0.15 4.52 16 12 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 13 C 0.44 18.81 6.79 71.24 0.48 19.30 16 14 O -0.54 -26.92 14.94 26.05 0.39 -26.53 16 15 O -0.34 -15.62 9.81 -51.42 -0.50 -16.13 16 16 C 0.10 4.89 4.65 71.98 0.34 5.23 16 17 C 0.02 0.87 0.61 -52.23 -0.03 0.84 16 18 C -0.50 -27.11 7.93 25.60 0.20 -26.91 16 19 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 20 C 0.02 1.12 5.25 84.65 0.44 1.56 16 21 N -0.91 -53.97 11.30 21.45 0.24 -53.73 16 22 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 26 C 0.04 1.76 8.36 72.30 0.60 2.36 16 27 O -0.40 -18.93 12.41 -148.98 -1.85 -20.78 16 28 C 0.05 2.62 7.92 72.30 0.57 3.19 16 29 H 0.04 1.28 7.94 -2.39 -0.02 1.26 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.76 5.67 -2.39 -0.01 0.75 16 33 H 0.10 0.86 8.12 -2.38 -0.02 0.84 16 34 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.16 3.69 -2.39 -0.01 1.15 16 38 H 0.08 1.09 7.00 -2.38 -0.02 1.07 16 39 H 0.12 0.93 4.69 -2.39 -0.01 0.92 16 40 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.60 7.85 -2.39 -0.02 1.58 16 43 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.04 2.36 7.12 -2.39 -0.02 2.34 16 45 H 0.05 2.16 8.06 -2.39 -0.02 2.14 16 46 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 47 H 0.08 2.97 8.04 -2.39 -0.02 2.95 16 48 H 0.09 3.56 8.08 -2.39 -0.02 3.54 16 49 H 0.07 3.93 7.43 -2.39 -0.02 3.91 16 50 H 0.07 2.91 8.10 -2.39 -0.02 2.89 16 Total: -1.00 -83.58 392.65 4.93 -78.65 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.93 Total: 17.73 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 5.81 Total: 19.27 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.98 Total: -72.39 kcal Atomic # 8 Polarization: -88.71 SS G_CDS: -1.86 Total: -90.58 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -83.58 4.93 -78.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.439 kcal (2) G-P(sol) polarization free energy of solvation -83.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds