Wall clock time and date at job start Tue Mar 31 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48492 * 109.47176 * 239.99837 * 3 2 1 5 5 H 1.48504 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99456 * 3 2 1 7 7 C 1.37874 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99797 * 185.64641 * 7 2 1 9 9 C 1.50701 * 120.00285 * 5.65009 * 7 2 1 10 10 C 1.52996 * 113.56592 * 69.37650 * 9 7 2 11 11 O 1.45194 * 109.47204 * 51.06802 * 10 9 7 12 12 C 1.34228 * 117.00110 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00255 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00065 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47160 * 180.02562 * 14 12 11 16 16 N 1.46500 * 109.46985 * 179.97438 * 15 14 12 17 17 C 1.34784 * 119.99778 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99953 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46748 * 299.99486 * 19 17 16 21 21 C 1.53005 * 109.46859 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.46954 * 60.00191 * 21 20 19 23 23 C 1.53006 * 109.47058 * 299.99974 * 22 21 20 24 24 C 1.52992 * 109.47244 * 179.97438 * 19 17 16 25 25 C 1.53368 * 114.56295 * 295.10507 * 9 7 2 26 26 O 1.43353 * 88.44449 * 220.42122 * 25 9 7 27 27 C 1.43351 * 88.32282 * 28.14968 * 26 25 9 28 28 H 0.97002 * 119.99699 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46747 * 171.07176 * 10 9 7 30 30 H 1.09003 * 109.47138 * 291.06739 * 10 9 7 31 31 H 1.09004 * 109.47086 * 300.00049 * 14 12 11 32 32 H 1.09002 * 109.47276 * 60.00109 * 14 12 11 33 33 H 1.08995 * 109.47123 * 300.00073 * 15 14 12 34 34 H 1.09002 * 109.47132 * 59.99783 * 15 14 12 35 35 H 0.96995 * 120.00283 * 359.97438 * 16 15 14 36 36 H 1.09002 * 109.47276 * 59.99491 * 19 17 16 37 37 H 1.08992 * 109.47766 * 299.99984 * 20 19 17 38 38 H 1.09004 * 109.47296 * 60.00351 * 20 19 17 39 39 H 1.09002 * 109.47370 * 300.00130 * 21 20 19 40 40 H 1.08995 * 109.47274 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47335 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47132 * 59.99793 * 22 21 20 43 43 H 1.09002 * 109.47002 * 299.99899 * 23 22 21 44 44 H 1.08994 * 109.47139 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.47099 * 300.00111 * 24 19 17 46 46 H 1.09002 * 109.47070 * 59.99769 * 24 19 17 47 47 H 1.08993 * 113.39616 * 105.52216 * 25 9 7 48 48 H 1.09001 * 113.39265 * 335.31729 * 25 9 7 49 49 H 1.09002 * 113.38799 * 86.74776 * 27 26 25 50 50 H 1.08992 * 113.39212 * 216.90865 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0926 9 6 1.2565 -2.4961 -0.1274 10 6 0.6381 -2.7130 -1.5099 11 8 1.6496 -2.5051 -2.5306 12 6 1.2669 -2.6588 -3.8079 13 8 0.1244 -2.9566 -4.0647 14 6 2.2622 -2.4598 -4.9219 15 6 1.5740 -2.6925 -6.2684 16 7 2.5415 -2.4985 -7.3512 17 6 2.1569 -2.6516 -8.6339 18 8 1.0101 -2.9505 -8.8916 19 6 3.1522 -2.4526 -9.7479 20 6 3.6991 -1.0247 -9.6940 21 6 4.7101 -0.8228 -10.8245 22 6 4.0222 -1.0550 -12.1713 23 6 3.4752 -2.4830 -12.2251 24 6 2.4640 -2.6852 -11.0943 25 6 0.3211 -2.8119 1.0463 26 8 0.7469 -4.1784 0.9670 27 6 1.9961 -3.7146 0.4386 28 1 -0.4850 0.8401 -0.0004 29 1 0.2542 -3.7307 -1.5805 30 1 -0.1781 -2.0057 -1.6578 31 1 2.6512 -1.4423 -4.8841 32 1 3.0834 -3.1673 -4.8061 33 1 1.1847 -3.7098 -6.3064 34 1 0.7530 -1.9848 -6.3839 35 1 3.4585 -2.2591 -7.1452 36 1 3.9729 -3.1606 -9.6326 37 1 2.8785 -0.3167 -9.8092 38 1 4.1896 -0.8594 -8.7347 39 1 5.5308 -1.5308 -10.7088 40 1 5.1001 0.1943 -10.7859 41 1 4.7423 -0.9108 -12.9768 42 1 3.2015 -0.3470 -12.2870 43 1 4.2959 -3.1910 -12.1095 44 1 2.9848 -2.6482 -13.1844 45 1 2.0746 -3.7025 -11.1324 46 1 1.6431 -1.9774 -11.2098 47 1 -0.7335 -2.6727 0.8087 48 1 0.6115 -2.3213 1.9753 49 1 2.7238 -3.4597 1.2091 50 1 2.4093 -4.3666 -0.3307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646889722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:09 Heat of formation + Delta-G solvation = -164.996232 kcal Electronic energy + Delta-G solvation = -29487.813864 eV Core-core repulsion = 25287.289649 eV Total energy + Delta-G solvation = -4200.524216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45881 -40.05584 -39.39248 -37.91665 -36.02429 -35.16270 -33.04176 -32.07735 -31.10373 -30.64649 -29.82233 -26.01575 -25.13534 -24.78324 -24.27038 -23.16549 -22.73964 -20.86937 -20.30774 -19.81355 -18.71690 -17.39512 -17.31637 -16.85430 -16.31299 -16.03472 -15.56923 -15.40969 -15.17723 -14.97851 -14.67941 -14.49393 -14.41025 -14.30989 -14.19139 -13.91734 -13.60791 -12.96998 -12.72111 -12.56065 -12.49644 -12.31766 -12.07165 -11.80920 -11.67985 -11.51587 -11.48553 -11.41177 -11.12073 -11.00839 -10.97302 -10.80369 -10.70516 -10.57888 -10.49021 -10.03343 -9.85673 -9.80722 -9.23061 -9.07648 -9.00446 -8.74401 -8.52551 -6.21264 -4.25553 2.48583 2.69422 2.76396 3.21822 3.28267 3.29396 3.51004 4.25030 4.28852 4.29679 4.34774 4.60043 4.79368 4.81315 4.88981 4.97584 5.01034 5.07398 5.08637 5.09879 5.12926 5.20944 5.23107 5.43270 5.44610 5.63427 5.68012 5.72440 5.77179 5.79544 5.80131 5.83160 5.92700 5.94562 6.00073 6.07560 6.21416 6.24004 6.31789 6.43676 6.62152 6.79701 7.03910 7.09855 7.25748 7.29166 7.33738 7.74053 8.06206 8.08684 8.37332 8.71553 9.39859 10.87886 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.002145 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.546452 B =13052.374734 C =14153.857208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.108 3.892 11 O -0.330 6.330 12 C 0.458 3.542 13 O -0.519 6.519 14 C -0.127 4.127 15 C 0.130 3.870 16 N -0.731 5.731 17 C 0.515 3.485 18 O -0.536 6.536 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.100 4.100 25 C 0.060 3.940 26 O -0.403 6.403 27 C 0.031 3.969 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 -2.104 -19.749 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.020 3.980 10 C 0.034 3.966 11 O -0.244 6.244 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.165 4.165 15 C 0.007 3.993 16 N -0.383 5.383 17 C 0.301 3.699 18 O -0.412 6.412 19 C -0.126 4.126 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.138 4.138 25 C -0.017 4.017 26 O -0.322 6.322 27 C -0.046 4.046 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.600 -2.544 -19.868 22.212 hybrid contribution 0.780 1.238 0.261 1.486 sum 10.380 -1.306 -19.607 22.224 Atomic orbital electron populations 1.69905 1.05952 1.27333 1.49292 1.24969 0.94879 0.99235 0.94329 0.86598 0.79608 0.82733 0.78754 1.20099 1.21291 1.20128 1.20672 0.93381 0.89049 1.51211 0.91688 1.20411 0.93594 0.94609 0.89355 1.22821 0.89213 0.99133 0.85388 1.86487 1.43892 1.79471 1.14569 1.23082 0.88068 0.74005 0.84841 1.90660 1.21009 1.44341 1.84940 1.21412 0.98294 1.05994 0.90803 1.21091 0.91313 1.03561 0.83382 1.46002 1.14234 1.72107 1.06002 1.20696 0.89252 0.76440 0.83466 1.90730 1.20067 1.46689 1.83671 1.21364 0.97801 0.99309 0.94152 1.21553 0.99339 0.94772 0.99337 1.21527 0.97793 1.01860 0.94346 1.21575 1.00180 0.97124 0.97148 1.21570 0.98759 0.96878 0.98512 1.21360 0.97794 1.02979 0.91684 1.23616 0.99925 0.79124 0.99012 1.89640 1.29742 1.26176 1.86687 1.23819 0.88317 0.95668 0.96807 0.92497 0.93604 0.89935 0.87169 0.87382 0.90360 0.90300 0.76523 0.88486 0.91208 0.91322 0.91706 0.91572 0.91970 0.91852 0.91923 0.91672 0.91190 0.91124 0.90970 0.90734 0.91111 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 12.09 55.43 0.67 -22.98 16 2 C 0.07 1.77 5.36 -17.82 -0.10 1.67 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.51 -12.70 8.01 -34.44 -0.28 -12.97 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.02 0.49 0.76 -155.28 -0.12 0.38 16 10 C 0.11 2.50 4.83 37.16 0.18 2.67 16 11 O -0.33 -6.94 9.79 -39.25 -0.38 -7.32 16 12 C 0.46 8.37 7.96 36.01 0.29 8.66 16 13 O -0.52 -11.00 15.73 -18.75 -0.29 -11.29 16 14 C -0.13 -1.55 5.93 -27.88 -0.17 -1.71 16 15 C 0.13 1.64 4.96 -4.04 -0.02 1.62 16 16 N -0.73 -7.11 5.45 -60.29 -0.33 -7.43 16 17 C 0.52 5.84 7.15 -10.98 -0.08 5.76 16 18 O -0.54 -8.52 15.98 5.56 0.09 -8.43 16 19 C -0.10 -0.81 2.52 -91.77 -0.23 -1.04 16 20 C -0.11 -0.72 5.10 -26.73 -0.14 -0.86 16 21 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 22 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 23 C -0.12 -0.73 5.92 -26.70 -0.16 -0.89 16 24 C -0.10 -0.83 4.50 -26.71 -0.12 -0.95 16 25 C 0.06 1.39 7.20 24.61 0.18 1.56 16 26 O -0.40 -9.10 12.57 -35.23 -0.44 -9.54 16 27 C 0.03 0.65 7.89 24.60 0.19 0.84 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.05 1.03 7.96 -51.93 -0.41 0.62 16 30 H 0.08 2.11 7.58 -51.93 -0.39 1.72 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.40 2.56 7.89 -40.82 -0.32 2.24 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 46 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.07 1.70 8.13 -51.93 -0.42 1.28 16 48 H 0.07 1.73 8.10 -51.93 -0.42 1.31 16 49 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 50 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 LS Contribution 405.79 15.07 6.12 6.12 Total: -1.00 -31.39 405.79 -9.14 -40.53 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.66 Total: 2.30 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.88 Total: 3.11 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.34 Total: -30.41 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.03 Total: -36.59 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.39 -9.14 -40.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.467 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds