Wall clock time and date at job start Tue Mar 31 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47081 * 239.99649 * 3 2 1 5 5 H 1.48498 * 109.47183 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47380 * 119.99671 * 3 2 1 7 7 C 1.37876 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00403 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.40843 * 313.19561 * 9 7 2 11 11 C 1.53497 * 114.20939 * 179.97438 * 9 7 2 12 12 N 1.47064 * 87.98388 * 220.34471 * 11 9 7 13 13 C 1.34781 * 136.05480 * 207.08287 * 12 11 9 14 14 O 1.21281 * 119.99872 * 4.63125 * 13 12 11 15 15 C 1.50702 * 119.99659 * 184.62609 * 13 12 11 16 16 C 1.52996 * 109.54105 * 56.35088 * 15 13 12 17 17 H 1.08999 * 109.48253 * 299.81762 * 16 15 13 18 18 C 1.53093 * 109.48416 * 59.84438 * 16 15 13 19 19 C 1.53175 * 109.16220 * 177.57839 * 18 16 15 20 20 C 1.53175 * 109.04882 * 303.03268 * 19 18 16 21 21 C 1.53094 * 109.16058 * 56.97510 * 20 19 18 22 22 O 1.42903 * 109.41628 * 302.39333 * 21 20 19 23 23 C 1.53175 * 109.61284 * 176.56798 * 15 13 12 24 24 C 1.53096 * 109.16275 * 62.93417 * 23 15 13 25 25 O 1.42899 * 109.41554 * 57.60629 * 24 23 15 26 26 C 1.42898 * 114.09810 * 298.84103 * 25 24 23 27 27 C 1.53093 * 109.41399 * 61.16027 * 26 25 24 28 28 C 1.47068 * 87.88590 * 27.34084 * 12 11 9 29 29 H 0.96995 * 120.00623 * 0.02562 * 1 2 3 30 30 H 0.96697 * 114.00263 * 46.80100 * 10 9 7 31 31 H 1.08999 * 113.46440 * 105.56415 * 11 9 7 32 32 H 1.09005 * 113.51606 * 335.13338 * 11 9 7 33 33 H 1.09006 * 109.51888 * 297.49690 * 18 16 15 34 34 H 1.08999 * 109.52247 * 57.68470 * 18 16 15 35 35 H 1.09003 * 109.54583 * 183.16191 * 19 18 16 36 36 H 1.09002 * 109.53519 * 62.90365 * 19 18 16 37 37 H 1.08997 * 109.52383 * 297.07415 * 20 19 18 38 38 H 1.09000 * 109.52312 * 176.87702 * 20 19 18 39 39 H 1.08995 * 109.48162 * 182.40621 * 21 20 19 40 40 H 1.09007 * 109.48830 * 62.38022 * 21 20 19 41 41 H 1.08995 * 109.52273 * 182.83794 * 23 15 13 42 42 H 1.09003 * 109.52698 * 303.03025 * 23 15 13 43 43 H 1.09003 * 109.47997 * 297.61965 * 24 23 15 44 44 H 1.09000 * 109.47898 * 177.59236 * 24 23 15 45 45 H 1.09002 * 109.48357 * 301.17731 * 26 25 24 46 46 H 1.08998 * 109.49169 * 181.14145 * 26 25 24 47 47 H 1.09002 * 109.52549 * 182.48635 * 27 26 25 48 48 H 1.08997 * 109.52371 * 62.29548 * 27 26 25 49 49 H 1.08998 * 113.46418 * 87.44318 * 28 12 11 50 50 H 1.08999 * 113.46496 * 217.87382 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.1895 -2.5419 0.9562 11 6 2.1489 -3.7442 0.0005 12 7 1.2101 -4.3574 -0.9509 13 6 0.8356 -5.6114 -1.2732 14 8 1.2670 -6.5538 -0.6434 15 6 -0.1193 -5.8424 -2.4160 16 6 0.4475 -5.2152 -3.6912 17 1 0.5780 -4.1434 -3.5422 18 6 1.8003 -5.8539 -4.0167 19 6 2.3325 -5.2644 -5.3264 20 6 1.2997 -5.4939 -6.4341 21 6 -0.0337 -4.8689 -6.0151 22 8 -0.4567 -5.4392 -4.7750 23 6 -0.3136 -7.3470 -2.6276 24 6 -0.9538 -7.9520 -1.3754 25 8 -2.1940 -7.2935 -1.1106 26 6 -2.0686 -5.8926 -0.8580 27 6 -1.4732 -5.2049 -2.0893 28 6 0.8644 -3.0005 -1.4006 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3742 -1.7562 0.9533 31 1 2.1852 -4.2532 0.9637 32 1 3.1389 -3.5666 -0.4198 33 1 2.5044 -5.6463 -3.2108 34 1 1.6775 -6.9315 -4.1258 35 1 3.2685 -5.7550 -5.5934 36 1 2.5025 -4.1949 -5.2022 37 1 1.1666 -6.5641 -6.5920 38 1 1.6459 -5.0287 -7.3570 39 1 -0.7840 -5.0662 -6.7807 40 1 0.0905 -3.7925 -5.8967 41 1 -0.9645 -7.5130 -3.4859 42 1 0.6533 -7.8177 -2.8060 43 1 -0.2840 -7.8214 -0.5254 44 1 -1.1337 -9.0149 -1.5366 45 1 -1.4134 -5.7349 -0.0012 46 1 -3.0515 -5.4718 -0.6463 47 1 -1.3356 -4.1434 -1.8829 48 1 -2.1475 -5.3276 -2.9368 49 1 1.5154 -2.6261 -2.1906 50 1 -0.1936 -2.8760 -1.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647347356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:54 Heat of formation + Delta-G solvation = -144.097487 kcal Electronic energy + Delta-G solvation = -33206.688831 eV Core-core repulsion = 29007.070853 eV Total energy + Delta-G solvation = -4199.617978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04726 -39.09943 -38.53381 -37.06115 -34.34800 -34.00657 -33.67922 -32.25518 -31.01596 -30.24050 -28.79253 -26.35682 -25.33464 -25.15875 -24.27752 -23.31523 -22.53163 -21.41231 -20.23335 -19.53199 -18.12059 -17.37898 -16.71501 -16.29375 -15.96206 -15.72733 -15.56448 -15.31244 -14.97173 -14.84384 -14.54134 -14.39640 -14.24928 -13.99311 -13.81899 -13.31041 -13.11755 -12.86692 -12.74886 -12.62473 -12.22542 -12.07592 -12.00821 -11.75772 -11.62909 -11.44854 -11.21301 -11.13283 -11.10412 -10.91854 -10.85698 -10.54959 -10.44823 -10.35782 -10.28422 -10.13452 -9.58549 -9.46859 -9.27370 -8.97117 -8.82346 -8.44302 -7.90571 -6.46516 -4.57119 2.97626 3.11062 3.17812 3.19347 3.41720 3.80973 4.12450 4.17035 4.49821 4.66632 4.72245 4.76867 4.79769 4.87292 5.00674 5.06469 5.17390 5.23126 5.27419 5.43798 5.48427 5.54437 5.59684 5.67632 5.71610 5.75599 5.78241 5.83224 5.85756 5.91207 5.98113 5.99419 6.05603 6.06607 6.10460 6.19283 6.25467 6.29583 6.37316 6.39212 6.48721 6.58627 6.66290 7.03104 7.20338 7.48801 7.56503 7.73348 8.40789 8.46611 8.66174 9.14470 9.42378 10.60033 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.004597 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.780448 B = 6089.888510 C = 7302.736245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.244 3.756 10 O -0.570 6.570 11 C 0.105 3.895 12 N -0.630 5.630 13 C 0.549 3.451 14 O -0.555 6.555 15 C -0.060 4.060 16 C 0.106 3.894 17 H 0.069 0.931 18 C -0.153 4.153 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.371 6.371 23 C -0.123 4.123 24 C 0.048 3.952 25 O -0.387 6.387 26 C 0.062 3.938 27 C -0.144 4.144 28 C 0.068 3.932 29 H 0.275 0.725 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -7.513 -10.914 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.201 3.799 10 O -0.383 6.383 11 C -0.017 4.017 12 N -0.362 5.362 13 C 0.338 3.662 14 O -0.435 6.435 15 C -0.063 4.063 16 C 0.048 3.952 17 H 0.087 0.913 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.193 4.193 21 C -0.016 4.016 22 O -0.290 6.290 23 C -0.160 4.160 24 C -0.029 4.029 25 O -0.306 6.306 26 C -0.015 4.015 27 C -0.181 4.181 28 C -0.055 4.055 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.392 -8.856 -10.468 13.718 hybrid contribution 0.794 1.826 -0.474 2.047 sum 0.402 -7.029 -10.943 13.012 Atomic orbital electron populations 1.69240 1.06182 1.28402 1.49944 1.25062 0.95016 0.99889 0.92950 0.86381 0.79516 0.81594 0.79014 1.19909 1.20935 1.19792 1.21388 0.93870 0.89772 1.52312 0.91026 1.19535 0.85334 0.90959 0.84022 1.86051 1.44939 1.48337 1.58955 1.23341 0.93720 0.92327 0.92317 1.49721 1.42228 1.04644 1.39641 1.19643 0.81353 0.81055 0.84135 1.90580 1.57797 1.40877 1.54231 1.20745 0.95512 0.97812 0.92267 1.21989 0.88570 0.98886 0.85784 0.91295 1.22261 0.97120 1.01479 0.98162 1.21575 0.98364 1.01385 0.94543 1.22184 0.96282 1.02057 0.98731 1.22560 0.95960 0.96873 0.86241 1.87901 1.45949 1.77775 1.17386 1.21991 1.01913 0.92583 0.99550 1.22866 0.86201 0.95974 0.97818 1.87842 1.30575 1.20938 1.91219 1.22541 1.01624 0.81232 0.96116 1.22275 0.94873 1.00922 1.00050 1.24385 1.00358 0.77961 1.02820 0.91448 0.74940 0.91504 0.89740 0.90899 0.90630 0.91503 0.91626 0.91164 0.91050 0.88929 0.93100 0.90038 0.90653 0.90366 0.89616 0.92897 0.88720 0.89729 0.89496 0.90325 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.86 11.01 55.43 0.61 -21.25 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 18.78 29.54 -169.99 -5.02 13.76 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -12.82 8.69 -34.44 -0.30 -13.12 16 8 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.24 5.55 1.59 -91.13 -0.14 5.41 16 10 O -0.57 -14.12 13.55 -35.23 -0.48 -14.59 16 11 C 0.11 2.19 8.03 -8.51 -0.07 2.12 16 12 N -0.63 -12.49 3.58 -185.04 -0.66 -13.16 16 13 C 0.55 10.55 4.23 -10.98 -0.05 10.51 16 14 O -0.55 -11.93 14.52 5.56 0.08 -11.84 16 15 C -0.06 -0.98 0.17 -155.48 -0.03 -1.00 16 16 C 0.11 1.55 1.77 -26.68 -0.05 1.50 16 17 H 0.07 1.08 6.11 -51.93 -0.32 0.77 16 18 C -0.15 -2.06 4.84 -26.59 -0.13 -2.19 16 19 C -0.12 -1.34 6.03 -26.55 -0.16 -1.50 16 20 C -0.15 -1.50 6.14 -26.59 -0.16 -1.67 16 21 C 0.06 0.65 6.84 37.21 0.25 0.91 16 22 O -0.37 -5.09 8.95 -35.23 -0.32 -5.41 16 23 C -0.12 -1.86 4.03 -26.59 -0.11 -1.97 16 24 C 0.05 0.76 6.55 37.21 0.24 1.01 16 25 O -0.39 -6.61 10.76 -35.23 -0.38 -6.99 16 26 C 0.06 1.03 6.62 37.21 0.25 1.28 16 27 C -0.14 -2.33 4.75 -26.59 -0.13 -2.45 16 28 C 0.07 1.36 5.71 -8.37 -0.05 1.31 16 29 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.39 9.90 6.33 45.56 0.29 10.19 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.07 1.10 7.31 -51.93 -0.38 0.72 16 34 H 0.08 1.00 6.40 -51.93 -0.33 0.67 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 41 H 0.08 1.19 7.59 -51.93 -0.39 0.80 16 42 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 43 H 0.08 1.43 5.69 -51.93 -0.30 1.14 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 1.01 7.38 -51.93 -0.38 0.63 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.08 1.45 5.38 -51.93 -0.28 1.17 16 48 H 0.09 1.34 7.60 -51.93 -0.39 0.95 16 49 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 50 H 0.07 1.38 5.88 -51.93 -0.31 1.07 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -26.69 372.24 -8.59 -35.28 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -7.31 Total: 16.79 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.72 Total: 1.80 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.05 Total: -34.41 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.09 Total: -38.83 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.69 -8.59 -35.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647347356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.818 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds