Wall clock time and date at job start Tue Mar 31 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47081 * 239.99649 * 3 2 1 5 5 H 1.48498 * 109.47183 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47380 * 119.99671 * 3 2 1 7 7 C 1.37876 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00403 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.40843 * 313.19561 * 9 7 2 11 11 C 1.53497 * 114.20939 * 179.97438 * 9 7 2 12 12 N 1.47064 * 87.98388 * 220.34471 * 11 9 7 13 13 C 1.34781 * 136.05480 * 207.08287 * 12 11 9 14 14 O 1.21281 * 119.99872 * 4.63125 * 13 12 11 15 15 C 1.50702 * 119.99659 * 184.62609 * 13 12 11 16 16 C 1.52996 * 109.54105 * 56.35088 * 15 13 12 17 17 H 1.08999 * 109.48253 * 299.81762 * 16 15 13 18 18 C 1.53093 * 109.48416 * 59.84438 * 16 15 13 19 19 C 1.53175 * 109.16220 * 177.57839 * 18 16 15 20 20 C 1.53175 * 109.04882 * 303.03268 * 19 18 16 21 21 C 1.53094 * 109.16058 * 56.97510 * 20 19 18 22 22 O 1.42903 * 109.41628 * 302.39333 * 21 20 19 23 23 C 1.53175 * 109.61284 * 176.56798 * 15 13 12 24 24 C 1.53096 * 109.16275 * 62.93417 * 23 15 13 25 25 O 1.42899 * 109.41554 * 57.60629 * 24 23 15 26 26 C 1.42898 * 114.09810 * 298.84103 * 25 24 23 27 27 C 1.53093 * 109.41399 * 61.16027 * 26 25 24 28 28 C 1.47068 * 87.88590 * 27.34084 * 12 11 9 29 29 H 0.96995 * 120.00623 * 0.02562 * 1 2 3 30 30 H 0.96697 * 114.00263 * 46.80100 * 10 9 7 31 31 H 1.08999 * 113.46440 * 105.56415 * 11 9 7 32 32 H 1.09005 * 113.51606 * 335.13338 * 11 9 7 33 33 H 1.09006 * 109.51888 * 297.49690 * 18 16 15 34 34 H 1.08999 * 109.52247 * 57.68470 * 18 16 15 35 35 H 1.09003 * 109.54583 * 183.16191 * 19 18 16 36 36 H 1.09002 * 109.53519 * 62.90365 * 19 18 16 37 37 H 1.08997 * 109.52383 * 297.07415 * 20 19 18 38 38 H 1.09000 * 109.52312 * 176.87702 * 20 19 18 39 39 H 1.08995 * 109.48162 * 182.40621 * 21 20 19 40 40 H 1.09007 * 109.48830 * 62.38022 * 21 20 19 41 41 H 1.08995 * 109.52273 * 182.83794 * 23 15 13 42 42 H 1.09003 * 109.52698 * 303.03025 * 23 15 13 43 43 H 1.09003 * 109.47997 * 297.61965 * 24 23 15 44 44 H 1.09000 * 109.47898 * 177.59236 * 24 23 15 45 45 H 1.09002 * 109.48357 * 301.17731 * 26 25 24 46 46 H 1.08998 * 109.49169 * 181.14145 * 26 25 24 47 47 H 1.09002 * 109.52549 * 182.48635 * 27 26 25 48 48 H 1.08997 * 109.52371 * 62.29548 * 27 26 25 49 49 H 1.08998 * 113.46418 * 87.44318 * 28 12 11 50 50 H 1.08999 * 113.46496 * 217.87382 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.1895 -2.5419 0.9562 11 6 2.1489 -3.7442 0.0005 12 7 1.2101 -4.3574 -0.9509 13 6 0.8356 -5.6114 -1.2732 14 8 1.2670 -6.5538 -0.6434 15 6 -0.1193 -5.8424 -2.4160 16 6 0.4475 -5.2152 -3.6912 17 1 0.5780 -4.1434 -3.5422 18 6 1.8003 -5.8539 -4.0167 19 6 2.3325 -5.2644 -5.3264 20 6 1.2997 -5.4939 -6.4341 21 6 -0.0337 -4.8689 -6.0151 22 8 -0.4567 -5.4392 -4.7750 23 6 -0.3136 -7.3470 -2.6276 24 6 -0.9538 -7.9520 -1.3754 25 8 -2.1940 -7.2935 -1.1106 26 6 -2.0686 -5.8926 -0.8580 27 6 -1.4732 -5.2049 -2.0893 28 6 0.8644 -3.0005 -1.4006 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3742 -1.7562 0.9533 31 1 2.1852 -4.2532 0.9637 32 1 3.1389 -3.5666 -0.4198 33 1 2.5044 -5.6463 -3.2108 34 1 1.6775 -6.9315 -4.1258 35 1 3.2685 -5.7550 -5.5934 36 1 2.5025 -4.1949 -5.2022 37 1 1.1666 -6.5641 -6.5920 38 1 1.6459 -5.0287 -7.3570 39 1 -0.7840 -5.0662 -6.7807 40 1 0.0905 -3.7925 -5.8967 41 1 -0.9645 -7.5130 -3.4859 42 1 0.6533 -7.8177 -2.8060 43 1 -0.2840 -7.8214 -0.5254 44 1 -1.1337 -9.0149 -1.5366 45 1 -1.4134 -5.7349 -0.0012 46 1 -3.0515 -5.4718 -0.6463 47 1 -1.3356 -4.1434 -1.8829 48 1 -2.1475 -5.3276 -2.9368 49 1 1.5154 -2.6261 -2.1906 50 1 -0.1936 -2.8760 -1.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647347356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:53 Heat of formation + Delta-G solvation = -162.150771 kcal Electronic energy + Delta-G solvation = -33207.471681 eV Core-core repulsion = 29007.070853 eV Total energy + Delta-G solvation = -4200.400827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43303 -40.52655 -39.79596 -38.62725 -35.97927 -35.46377 -34.63425 -34.12814 -32.31054 -31.32157 -30.44544 -27.79392 -27.00375 -26.65275 -25.31604 -24.56939 -23.73624 -22.85416 -21.40236 -20.95928 -19.78125 -19.09648 -17.99394 -17.55704 -17.42010 -17.08573 -16.99077 -16.79355 -16.26686 -16.20460 -15.98180 -15.73973 -15.56312 -15.22676 -15.06194 -14.76581 -14.57150 -14.28344 -14.16114 -13.82285 -13.70216 -13.47978 -13.35712 -13.28503 -13.08059 -12.77872 -12.74924 -12.48348 -12.28840 -12.23874 -12.20906 -12.07427 -11.88347 -11.60382 -11.50703 -11.36293 -11.22112 -10.87248 -10.66638 -10.43009 -10.35533 -10.18653 -9.58196 -8.27838 -6.44820 1.47294 1.47757 1.50688 1.57213 1.86957 2.39942 2.68476 2.86566 2.94076 3.27038 3.41056 3.61408 3.65724 3.80216 3.88032 3.90620 3.96349 4.05649 4.06960 4.09788 4.24170 4.26668 4.38777 4.46009 4.52658 4.54368 4.56926 4.62942 4.65428 4.70371 4.71697 4.73957 4.81473 4.84814 4.90113 4.93004 5.00236 5.01679 5.07091 5.11606 5.12819 5.20062 5.23399 5.34210 5.72182 5.89892 6.15296 6.20434 6.60571 6.82465 7.07686 7.29150 7.48553 8.77943 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.004597 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.780448 B = 6089.888510 C = 7302.736245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.035 3.965 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.223 3.777 10 O -0.585 6.585 11 C 0.105 3.895 12 N -0.630 5.630 13 C 0.547 3.453 14 O -0.580 6.580 15 C -0.058 4.058 16 C 0.114 3.886 17 H 0.056 0.944 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.148 4.148 21 C 0.052 3.948 22 O -0.380 6.380 23 C -0.115 4.115 24 C 0.045 3.955 25 O -0.391 6.391 26 C 0.063 3.937 27 C -0.137 4.137 28 C 0.087 3.913 29 H 0.277 0.723 30 H 0.389 0.611 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.113 0.887 45 H 0.021 0.979 46 H 0.113 0.887 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -7.541 -13.345 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.182 3.818 10 O -0.398 6.398 11 C -0.017 4.017 12 N -0.362 5.362 13 C 0.338 3.662 14 O -0.462 6.462 15 C -0.061 4.061 16 C 0.056 3.944 17 H 0.074 0.926 18 C -0.188 4.188 19 C -0.157 4.157 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.300 6.300 23 C -0.153 4.153 24 C -0.031 4.031 25 O -0.310 6.310 26 C -0.014 4.014 27 C -0.175 4.175 28 C -0.036 4.036 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.039 0.961 46 H 0.131 0.869 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.267 -8.894 -12.915 15.683 hybrid contribution 0.745 1.795 0.323 1.970 sum 0.478 -7.099 -12.591 14.463 Atomic orbital electron populations 1.69306 1.07118 1.29043 1.50169 1.25721 0.95712 1.02525 0.92584 0.85461 0.78305 0.78090 0.78926 1.19129 1.20847 1.20078 1.21617 0.94156 0.90508 1.52798 0.90786 1.19803 0.85380 0.91560 0.85095 1.86039 1.45506 1.48145 1.60074 1.23346 0.94589 0.91560 0.92232 1.49715 1.42129 1.04972 1.39419 1.20222 0.81228 0.80256 0.84474 1.90568 1.58833 1.41478 1.55302 1.20751 0.94535 0.98921 0.91917 1.21768 0.89206 0.97882 0.85575 0.92616 1.22222 0.96002 1.01698 0.98871 1.21591 0.99388 1.01062 0.93704 1.22156 0.95047 1.02451 0.98928 1.22839 0.97381 0.96880 0.85354 1.87872 1.45931 1.78103 1.18055 1.21962 1.02290 0.91547 0.99484 1.22938 0.85468 0.97555 0.97136 1.87838 1.31048 1.20879 1.91192 1.22538 1.02008 0.81583 0.95258 1.22216 0.95110 0.99983 1.00145 1.24116 1.00278 0.77740 1.01458 0.91316 0.75477 0.93024 0.87845 0.93103 0.90376 0.90226 0.92011 0.90762 0.88773 0.86708 0.93181 0.88643 0.90311 0.93122 0.86861 0.96060 0.86864 0.90965 0.88060 0.89241 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.75 11.01 21.45 0.24 -44.52 16 2 C 0.04 1.68 5.40 84.65 0.46 2.13 16 3 Si 0.97 38.02 29.54 68.60 2.03 40.05 16 4 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.55 -26.53 8.69 25.60 0.22 -26.31 16 8 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.22 10.35 1.59 -11.12 -0.02 10.33 16 10 O -0.58 -29.88 13.55 -148.98 -2.02 -31.90 16 11 C 0.11 4.48 8.03 83.18 0.67 5.15 16 12 N -0.63 -25.45 3.58 -858.23 -3.07 -28.52 16 13 C 0.55 21.36 4.23 87.66 0.37 21.73 16 14 O -0.58 -25.54 14.52 -3.03 -0.04 -25.58 16 15 C -0.06 -1.86 0.17 -52.81 -0.01 -1.87 16 16 C 0.11 3.21 1.77 30.62 0.05 3.26 16 17 H 0.06 1.71 6.11 -2.39 -0.01 1.70 16 18 C -0.15 -3.87 4.84 30.68 0.15 -3.72 16 19 C -0.12 -2.39 6.03 30.71 0.19 -2.21 16 20 C -0.15 -2.40 6.14 30.68 0.19 -2.21 16 21 C 0.05 0.96 6.84 72.01 0.49 1.46 16 22 O -0.38 -9.58 8.95 -148.98 -1.33 -10.92 16 23 C -0.12 -3.36 4.03 30.68 0.12 -3.23 16 24 C 0.05 1.41 6.55 72.01 0.47 1.88 16 25 O -0.39 -13.04 10.76 -148.98 -1.60 -14.64 16 26 C 0.06 2.11 6.62 72.01 0.48 2.59 16 27 C -0.14 -4.37 4.75 30.68 0.15 -4.23 16 28 C 0.09 3.53 5.71 83.27 0.48 4.00 16 29 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 30 H 0.39 20.17 6.33 -74.06 -0.47 19.71 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 32 H 0.10 3.94 8.10 -2.38 -0.02 3.93 16 33 H 0.05 1.52 7.31 -2.38 -0.02 1.51 16 34 H 0.08 1.95 6.40 -2.39 -0.02 1.94 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 2.55 7.59 -2.39 -0.02 2.53 16 42 H 0.08 2.25 6.51 -2.39 -0.02 2.23 16 43 H 0.05 1.89 5.69 -2.39 -0.01 1.87 16 44 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.02 0.84 7.38 -2.39 -0.02 0.82 16 46 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.07 2.49 5.38 -2.39 -0.01 2.48 16 48 H 0.10 2.96 7.60 -2.39 -0.02 2.94 16 49 H 0.09 3.42 7.94 -2.39 -0.02 3.40 16 50 H 0.06 2.64 5.88 -2.39 -0.01 2.63 16 Total: -1.00 -57.17 372.24 -0.87 -58.04 By element: Atomic # 1 Polarization: 48.75 SS G_CDS: 0.49 Total: 49.23 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.45 Total: 8.75 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.83 Total: -73.03 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -5.00 Total: -83.04 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -57.17 -0.87 -58.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647347356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.113 kcal (2) G-P(sol) polarization free energy of solvation -57.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds