Wall clock time and date at job start Tue Mar 31 2020 23:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 4 3 2 6 6 C 1.46947 * 111.00212 * 293.79697 * 5 4 3 7 7 C 1.53053 * 109.36624 * 176.81470 * 6 5 4 8 8 N 1.46952 * 109.36315 * 58.40153 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.81241 * 8 7 6 10 10 C 1.53001 * 109.47158 * 293.80088 * 9 8 7 11 11 C 1.53002 * 109.46914 * 179.97438 * 10 9 8 12 12 N 1.46493 * 109.46788 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99916 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00020 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47201 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00267 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99719 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47180 * 59.99400 * 21 19 17 23 23 H 1.48502 * 109.47610 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47047 * 299.99842 * 21 19 17 25 25 C 1.46958 * 110.88310 * 300.67874 * 8 7 6 26 26 C 1.46962 * 110.99604 * 170.00000 * 5 4 3 27 27 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 28 28 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 29 29 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 30 30 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 31 31 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 32 32 H 1.08995 * 109.49326 * 296.78182 * 6 5 4 33 33 H 1.09001 * 109.48965 * 56.84707 * 6 5 4 34 34 H 1.08996 * 109.48803 * 298.43675 * 7 6 5 35 35 H 1.08997 * 109.49194 * 178.37373 * 7 6 5 36 36 H 1.08996 * 109.46700 * 53.80100 * 9 8 7 37 37 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 38 38 H 1.09002 * 109.47001 * 299.99949 * 10 9 8 39 39 H 1.08995 * 109.46992 * 60.00028 * 10 9 8 40 40 H 1.08996 * 109.46890 * 299.99979 * 11 10 9 41 41 H 1.08995 * 109.47200 * 60.00239 * 11 10 9 42 42 H 0.96999 * 120.00599 * 359.97438 * 12 11 10 43 43 H 1.09002 * 109.46962 * 299.99828 * 15 13 12 44 44 H 1.08998 * 109.47513 * 59.99693 * 15 13 12 45 45 H 0.96999 * 120.00154 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.49311 * 299.35611 * 25 8 7 47 47 H 1.09000 * 109.48830 * 179.28622 * 25 8 7 48 48 H 1.09004 * 109.48585 * 303.15533 * 26 5 4 49 49 H 1.08996 * 109.48862 * 63.22185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6068 0.8974 -1.0570 6 6 4.2609 0.3793 -2.3879 7 6 4.7163 1.3773 -3.4551 8 7 6.1654 1.5903 -3.3364 9 6 6.6543 2.4858 -4.3933 10 6 6.5005 1.8015 -5.7531 11 6 7.0091 2.7345 -6.8540 12 7 6.8612 2.0795 -8.1560 13 6 7.2469 2.7174 -9.2789 14 8 7.7158 3.8338 -9.2115 15 6 7.0953 2.0434 -10.6182 16 16 7.6968 3.1471 -11.9206 17 6 7.4088 2.1367 -13.3350 18 1 6.9784 1.1532 -13.2176 19 6 7.7361 2.6044 -14.6002 20 7 8.2612 3.8029 -14.7434 21 14 7.4302 1.5336 -16.0999 22 1 5.9820 1.2197 -16.1970 23 1 7.8634 2.2576 -17.3220 24 1 8.2027 0.2716 -15.9730 25 6 6.5114 2.1084 -2.0054 26 6 6.0561 1.1103 -0.9382 27 1 -0.3633 -0.6641 0.7843 28 1 -0.3633 1.0112 0.1831 29 1 -0.3634 -0.3471 -0.9672 30 1 4.4811 0.3492 0.9672 31 1 4.4823 -1.0091 -0.1831 32 1 4.7601 -0.5764 -2.5472 33 1 3.1817 0.2418 -2.4554 34 1 4.1966 2.3247 -3.3123 35 1 4.4866 0.9818 -4.4445 36 1 6.0752 3.4092 -4.3837 37 1 7.7056 2.7144 -4.2184 38 1 7.0795 0.8780 -5.7627 39 1 5.4492 1.5730 -5.9280 40 1 6.4296 3.6576 -6.8442 41 1 8.0603 2.9634 -6.6793 42 1 6.4865 1.1864 -8.2099 43 1 7.6744 1.1200 -10.6278 44 1 6.0440 1.8147 -10.7931 45 1 8.4896 4.1299 -15.6275 46 1 6.0122 3.0641 -1.8461 47 1 7.5906 2.2458 -1.9380 48 1 6.2856 1.5059 0.0512 49 1 6.5757 0.1629 -1.0810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660872559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:36 Heat of formation + Delta-G solvation = 16.133152 kcal Electronic energy + Delta-G solvation = -25315.053968 eV Core-core repulsion = 21597.429733 eV Total energy + Delta-G solvation = -3717.624234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.91253 -39.11236 -36.96269 -35.11190 -34.13755 -32.41752 -32.03302 -31.35017 -30.14890 -29.00051 -27.33893 -25.52087 -25.02336 -24.18468 -23.39590 -21.47009 -20.32704 -20.12660 -17.81220 -17.33343 -16.84968 -16.23576 -16.12793 -15.83291 -15.59900 -15.27089 -15.02679 -14.81851 -14.78770 -14.70503 -14.34772 -14.05443 -13.95125 -13.84637 -13.44433 -13.17041 -13.07344 -12.86083 -12.61104 -12.46612 -12.06079 -11.84647 -11.79521 -11.67248 -11.38989 -11.23949 -11.03302 -11.02916 -10.87503 -10.75429 -10.31855 -10.14105 -9.81208 -9.38473 -9.05148 -8.94054 -8.85806 -8.69910 -8.22499 -6.48627 -6.20260 -3.90877 2.17058 2.32850 3.02736 3.12766 3.24414 3.27616 3.30424 3.45714 3.50744 3.79509 3.84472 4.21849 4.38514 4.51591 4.62752 4.73334 4.79552 4.83410 4.89571 4.97559 5.01267 5.03514 5.08369 5.13055 5.14734 5.17648 5.21727 5.23140 5.27967 5.35388 5.38122 5.44534 5.45898 5.51809 5.58868 5.62039 5.69514 5.88023 5.95167 6.01612 6.15815 6.39122 6.45617 6.62187 6.67756 6.70440 7.25503 7.60455 7.73828 8.36272 8.64164 9.24835 10.87138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.001419 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.212366 B =19722.342656 C =20669.833760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.179 4.179 3 C -0.184 4.184 4 C 0.170 3.830 5 N -0.539 5.539 6 C 0.058 3.942 7 C 0.054 3.946 8 N -0.540 5.540 9 C 0.059 3.941 10 C -0.127 4.127 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.057 3.943 26 C 0.058 3.942 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 -9.487 32.808 35.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.181 4.181 3 C -0.184 4.184 4 C 0.044 3.956 5 N -0.264 5.264 6 C -0.070 4.070 7 C -0.074 4.074 8 N -0.265 5.265 9 C -0.069 4.069 10 C -0.165 4.165 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.070 4.070 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.482 -7.458 32.800 34.948 hybrid contribution -0.969 -2.409 -1.034 2.795 sum -10.452 -9.867 31.766 34.866 Atomic orbital electron populations 1.18874 0.84617 1.03138 1.03086 1.22432 0.93894 1.01202 1.00535 1.21991 0.93238 1.01345 1.01847 1.18895 0.84914 0.95665 0.96146 1.62129 1.14279 1.47224 1.02790 1.22180 1.00715 0.96553 0.87512 1.22220 0.87586 0.98736 0.98878 1.62149 1.13927 1.47705 1.02709 1.21987 1.00899 0.93634 0.90368 1.21777 1.02141 0.99576 0.92998 1.21184 1.01461 0.95758 0.81822 1.45981 1.66966 1.20407 1.06011 1.20310 0.76818 0.86033 0.85145 1.90699 1.42841 1.18953 1.86782 1.23532 1.05315 1.04857 0.96710 1.85392 1.81628 1.21274 0.95093 1.22834 1.48778 1.04231 0.92633 0.90978 1.24986 0.94552 0.95433 0.98557 1.70009 1.39730 1.16568 1.24004 0.86227 0.78772 0.79895 0.80614 1.19949 1.20803 1.19945 1.22147 1.00731 0.96408 0.87828 1.22179 0.86575 0.99096 0.99138 0.90209 0.90101 0.90116 0.88536 0.92389 0.93709 0.90285 0.93850 0.89744 0.94206 0.90165 0.90358 0.91309 0.91806 0.91587 0.76834 0.89217 0.89247 0.92134 0.93778 0.89866 0.89963 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.19 10.32 34.37 0.35 0.17 16 2 C -0.18 -1.44 14.13 -37.12 -0.52 -1.97 16 3 C -0.18 -1.55 12.40 -37.12 -0.46 -2.01 16 4 C 0.17 1.12 5.46 -6.61 -0.04 1.08 16 5 N -0.54 -4.01 4.69 -237.97 -1.12 -5.13 16 6 C 0.06 0.44 5.43 -3.77 -0.02 0.42 16 7 C 0.05 0.42 5.41 -3.77 -0.02 0.40 16 8 N -0.54 -4.19 4.71 -234.47 -1.10 -5.29 16 9 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 10 C -0.13 -1.04 5.26 -26.73 -0.14 -1.18 16 11 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 12 N -0.74 -9.91 5.56 -60.30 -0.34 -10.24 16 13 C 0.53 10.04 7.85 -10.98 -0.09 9.96 16 14 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 15 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 C 0.06 0.39 5.61 -3.76 -0.02 0.37 16 26 C 0.06 0.36 5.61 -3.76 -0.02 0.33 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.49 8.03 -51.93 -0.42 0.08 16 31 H 0.06 0.34 8.12 -51.93 -0.42 -0.09 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.64 7.20 -51.93 -0.37 0.26 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.61 6.34 -51.93 -0.33 0.28 16 36 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 37 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 6.49 -51.93 -0.34 0.20 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 48 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 49 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -35.63 415.49 -11.82 -47.46 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.52 Total: -1.61 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.60 Total: -6.57 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.82 Total: -46.23 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.63 -11.82 -47.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660872559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.589 kcal (2) G-P(sol) polarization free energy of solvation -35.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds