Wall clock time and date at job start Tue Mar 31 2020 23:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 4 3 2 6 6 C 1.46947 * 111.00212 * 293.79697 * 5 4 3 7 7 C 1.53053 * 109.36624 * 176.81470 * 6 5 4 8 8 N 1.46952 * 109.36315 * 58.40153 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.81241 * 8 7 6 10 10 C 1.53001 * 109.47158 * 293.80088 * 9 8 7 11 11 C 1.53002 * 109.46914 * 179.97438 * 10 9 8 12 12 N 1.46493 * 109.46788 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99916 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00020 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47201 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00267 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99719 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47180 * 59.99400 * 21 19 17 23 23 H 1.48502 * 109.47610 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47047 * 299.99842 * 21 19 17 25 25 C 1.46958 * 110.88310 * 300.67874 * 8 7 6 26 26 C 1.46962 * 110.99604 * 170.00000 * 5 4 3 27 27 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 28 28 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 29 29 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 30 30 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 31 31 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 32 32 H 1.08995 * 109.49326 * 296.78182 * 6 5 4 33 33 H 1.09001 * 109.48965 * 56.84707 * 6 5 4 34 34 H 1.08996 * 109.48803 * 298.43675 * 7 6 5 35 35 H 1.08997 * 109.49194 * 178.37373 * 7 6 5 36 36 H 1.08996 * 109.46700 * 53.80100 * 9 8 7 37 37 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 38 38 H 1.09002 * 109.47001 * 299.99949 * 10 9 8 39 39 H 1.08995 * 109.46992 * 60.00028 * 10 9 8 40 40 H 1.08996 * 109.46890 * 299.99979 * 11 10 9 41 41 H 1.08995 * 109.47200 * 60.00239 * 11 10 9 42 42 H 0.96999 * 120.00599 * 359.97438 * 12 11 10 43 43 H 1.09002 * 109.46962 * 299.99828 * 15 13 12 44 44 H 1.08998 * 109.47513 * 59.99693 * 15 13 12 45 45 H 0.96999 * 120.00154 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.49311 * 299.35611 * 25 8 7 47 47 H 1.09000 * 109.48830 * 179.28622 * 25 8 7 48 48 H 1.09004 * 109.48585 * 303.15533 * 26 5 4 49 49 H 1.08996 * 109.48862 * 63.22185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6068 0.8974 -1.0570 6 6 4.2609 0.3793 -2.3879 7 6 4.7163 1.3773 -3.4551 8 7 6.1654 1.5903 -3.3364 9 6 6.6543 2.4858 -4.3933 10 6 6.5005 1.8015 -5.7531 11 6 7.0091 2.7345 -6.8540 12 7 6.8612 2.0795 -8.1560 13 6 7.2469 2.7174 -9.2789 14 8 7.7158 3.8338 -9.2115 15 6 7.0953 2.0434 -10.6182 16 16 7.6968 3.1471 -11.9206 17 6 7.4088 2.1367 -13.3350 18 1 6.9784 1.1532 -13.2176 19 6 7.7361 2.6044 -14.6002 20 7 8.2612 3.8029 -14.7434 21 14 7.4302 1.5336 -16.0999 22 1 5.9820 1.2197 -16.1970 23 1 7.8634 2.2576 -17.3220 24 1 8.2027 0.2716 -15.9730 25 6 6.5114 2.1084 -2.0054 26 6 6.0561 1.1103 -0.9382 27 1 -0.3633 -0.6641 0.7843 28 1 -0.3633 1.0112 0.1831 29 1 -0.3634 -0.3471 -0.9672 30 1 4.4811 0.3492 0.9672 31 1 4.4823 -1.0091 -0.1831 32 1 4.7601 -0.5764 -2.5472 33 1 3.1817 0.2418 -2.4554 34 1 4.1966 2.3247 -3.3123 35 1 4.4866 0.9818 -4.4445 36 1 6.0752 3.4092 -4.3837 37 1 7.7056 2.7144 -4.2184 38 1 7.0795 0.8780 -5.7627 39 1 5.4492 1.5730 -5.9280 40 1 6.4296 3.6576 -6.8442 41 1 8.0603 2.9634 -6.6793 42 1 6.4865 1.1864 -8.2099 43 1 7.6744 1.1200 -10.6278 44 1 6.0440 1.8147 -10.7931 45 1 8.4896 4.1299 -15.6275 46 1 6.0122 3.0641 -1.8461 47 1 7.5906 2.2458 -1.9380 48 1 6.2856 1.5059 0.0512 49 1 6.5757 0.1629 -1.0810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660872559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:35 Heat of formation + Delta-G solvation = -9.637840 kcal Electronic energy + Delta-G solvation = -25316.171482 eV Core-core repulsion = 21597.429733 eV Total energy + Delta-G solvation = -3718.741748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68482 -40.35530 -37.64860 -36.13089 -34.76518 -34.57766 -32.96313 -31.93348 -31.05084 -30.05114 -28.02525 -27.62464 -25.76067 -24.78910 -24.08325 -22.28139 -21.59876 -20.78697 -19.80297 -17.89299 -17.76060 -17.54309 -16.99814 -16.91613 -16.86391 -16.34007 -16.06601 -15.86671 -15.64441 -15.52045 -15.30901 -15.11649 -14.66235 -14.53736 -14.40239 -14.26720 -14.00931 -13.82818 -13.56602 -13.33052 -13.16468 -13.07039 -12.85685 -12.70207 -12.60034 -12.56229 -12.25787 -12.06017 -11.84810 -11.72579 -11.54448 -11.12259 -10.95903 -10.84063 -10.66127 -10.27592 -10.11234 -9.49135 -9.29634 -8.66430 -8.33837 -6.12295 1.27534 1.44628 1.47527 1.57363 1.60822 1.61745 1.76178 2.25468 2.29570 2.87596 3.00034 3.00241 3.33154 3.36852 3.82906 3.88383 3.95491 4.04536 4.11363 4.16955 4.24076 4.30427 4.35097 4.39525 4.46841 4.51742 4.52358 4.56744 4.60916 4.66011 4.78068 4.78738 4.81163 4.82845 4.83404 4.89085 4.99401 5.02462 5.08244 5.15135 5.21502 5.42153 5.45934 5.85456 5.91741 6.09872 6.10431 6.20246 6.51972 6.70216 7.07247 7.25371 8.75198 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.001419 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.212366 B =19722.342656 C =20669.833760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.194 4.194 3 C -0.212 4.212 4 C 0.170 3.830 5 N -0.551 5.551 6 C 0.064 3.936 7 C 0.056 3.944 8 N -0.542 5.542 9 C 0.061 3.939 10 C -0.110 4.110 11 C 0.123 3.877 12 N -0.713 5.713 13 C 0.532 3.468 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.056 3.944 26 C 0.060 3.940 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.034 0.966 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -11.826 33.663 37.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.195 4.195 3 C -0.212 4.212 4 C 0.044 3.956 5 N -0.277 5.277 6 C -0.064 4.064 7 C -0.072 4.072 8 N -0.267 5.267 9 C -0.067 4.067 10 C -0.148 4.148 11 C -0.001 4.001 12 N -0.367 5.367 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.072 4.072 26 C -0.067 4.067 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.421 -9.846 33.706 36.628 hybrid contribution -0.731 -1.695 -1.136 2.167 sum -11.152 -11.541 32.571 36.310 Atomic orbital electron populations 1.19066 0.82708 1.04085 1.04155 1.23316 0.95173 1.00868 1.00188 1.22588 0.94227 1.01948 1.02464 1.18983 0.84116 0.95974 0.96495 1.62127 1.15103 1.47633 1.02794 1.22083 1.00165 0.96367 0.87814 1.22200 0.87550 0.98164 0.99267 1.62172 1.13770 1.47627 1.03116 1.21943 1.01154 0.93392 0.90198 1.21629 1.02556 0.98828 0.91835 1.21299 1.01170 0.96206 0.81457 1.45738 1.64848 1.20808 1.05265 1.20088 0.76807 0.85446 0.85897 1.90689 1.45483 1.21059 1.87388 1.23376 1.06336 1.03553 0.94824 1.85580 1.82922 1.25354 0.98734 1.23185 1.48846 1.04547 0.93027 0.89860 1.26127 0.93906 0.96841 1.02190 1.70179 1.40975 1.18743 1.24893 0.85003 0.79233 0.77916 0.75831 1.18656 1.20391 1.18641 1.22211 1.01368 0.96124 0.87515 1.22208 0.85788 0.98984 0.99715 0.88736 0.89265 0.89182 0.87186 0.91702 0.93870 0.91093 0.95120 0.89173 0.94730 0.89695 0.89607 0.90410 0.92726 0.92257 0.74615 0.87126 0.87170 0.91989 0.94732 0.88710 0.88410 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.35 10.32 70.18 0.72 0.37 16 2 C -0.19 -3.02 14.13 31.13 0.44 -2.58 16 3 C -0.21 -3.48 12.40 31.13 0.39 -3.10 16 4 C 0.17 2.08 5.46 84.50 0.46 2.54 16 5 N -0.55 -7.65 4.69 -906.81 -4.25 -11.90 16 6 C 0.06 0.92 5.43 86.31 0.47 1.39 16 7 C 0.06 0.81 5.41 86.31 0.47 1.28 16 8 N -0.54 -7.55 4.71 -895.72 -4.22 -11.77 16 9 C 0.06 0.86 4.96 86.30 0.43 1.29 16 10 C -0.11 -1.56 5.26 30.60 0.16 -1.40 16 11 C 0.12 2.63 5.67 86.38 0.49 3.12 16 12 N -0.71 -17.68 5.56 -463.08 -2.57 -20.25 16 13 C 0.53 19.71 7.85 87.65 0.69 20.40 16 14 O -0.57 -26.63 15.86 -3.02 -0.05 -26.68 16 15 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 16 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 17 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 21 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C 0.06 0.68 5.61 86.31 0.48 1.16 16 26 C 0.06 0.65 5.61 86.31 0.48 1.13 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.99 8.03 -2.39 -0.02 0.97 16 31 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.12 7.20 -2.39 -0.02 1.10 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 1.16 6.34 -2.39 -0.02 1.14 16 36 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.00 6.49 -2.39 -0.02 0.99 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.42 7.35 8.47 -92.71 -0.79 6.56 16 43 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.09 0.93 8.07 -2.39 -0.02 0.91 16 48 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 49 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -79.11 415.49 -2.56 -81.67 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.14 Total: 17.60 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 7.23 Total: -8.60 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -10.76 Total: -99.87 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -79.11 -2.56 -81.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660872559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.031 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds