Wall clock time and date at job start Tue Mar 31 2020 22:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33643 * 122.74737 * 2 1 4 4 S 1.76206 * 107.92444 * 179.97438 * 3 2 1 5 5 C 1.70973 * 90.27965 * 0.27856 * 4 3 2 6 6 C 1.50705 * 124.91439 * 179.84166 * 5 4 3 7 7 C 1.52997 * 109.46932 * 269.99785 * 6 5 4 8 8 C 1.50705 * 109.46932 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00037 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99785 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99845 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47488 * 179.97438 * 11 10 8 13 13 C 1.52990 * 109.47373 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.47192 * 179.97438 * 13 12 11 15 15 C 1.36943 * 119.99807 * 89.99757 * 14 13 12 16 16 H 1.07995 * 119.99953 * 217.15053 * 15 14 13 17 17 C 1.38807 * 119.99818 * 37.15048 * 15 14 13 18 18 N 1.31621 * 120.00152 * 21.26121 * 17 15 14 19 19 Si 1.86804 * 119.99702 * 201.26317 * 17 15 14 20 20 H 1.48501 * 109.46996 * 60.00301 * 19 17 15 21 21 H 1.48502 * 109.46915 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47171 * 299.99691 * 19 17 15 23 23 C 1.46498 * 120.00127 * 270.00358 * 14 13 12 24 24 C 1.52993 * 109.47370 * 114.90193 * 23 14 13 25 25 C 1.53001 * 109.46771 * 234.90050 * 23 14 13 26 26 N 1.29025 * 110.17199 * 359.83653 * 5 4 3 27 27 H 1.09006 * 109.46832 * 269.72645 * 1 2 3 28 28 H 1.08997 * 109.47083 * 149.73512 * 1 2 3 29 29 H 1.09003 * 109.47602 * 29.73046 * 1 2 3 30 30 H 1.08000 * 126.03937 * 0.04425 * 3 2 1 31 31 H 1.09002 * 109.46904 * 29.99603 * 6 5 4 32 32 H 1.08998 * 109.47204 * 149.99685 * 6 5 4 33 33 H 1.09002 * 109.47177 * 299.99651 * 7 6 5 34 34 H 1.08998 * 109.47257 * 59.99932 * 7 6 5 35 35 H 0.97002 * 119.99976 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47483 * 299.99678 * 11 10 8 37 37 H 1.08997 * 109.47761 * 59.99398 * 11 10 8 38 38 H 1.08997 * 109.46924 * 300.00173 * 12 11 10 39 39 H 1.08997 * 109.46889 * 59.99135 * 12 11 10 40 40 H 1.08997 * 109.47346 * 300.00048 * 13 12 11 41 41 H 1.08998 * 109.47238 * 60.00012 * 13 12 11 42 42 H 0.97004 * 119.99668 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47111 * 354.89307 * 23 14 13 44 44 H 1.08999 * 109.47596 * 63.30711 * 24 23 14 45 45 H 1.09006 * 109.47252 * 183.31382 * 24 23 14 46 46 H 1.09008 * 109.47056 * 303.30744 * 24 23 14 47 47 H 1.09003 * 109.47518 * 61.62001 * 25 23 14 48 48 H 1.09003 * 109.47135 * 181.61978 * 25 23 14 49 49 H 1.08994 * 109.47298 * 301.61459 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2298 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5039 -0.9817 -0.0073 6 6 4.4835 -2.1269 -0.0143 7 6 4.8134 -2.5070 -1.4591 8 6 5.7935 -3.6518 -1.4660 9 8 6.1895 -4.1175 -0.4185 10 7 6.2308 -4.1575 -2.6364 11 6 7.1830 -5.2707 -2.6431 12 6 7.5131 -5.6508 -4.0879 13 6 8.5081 -6.8130 -4.0949 14 7 8.8237 -7.1773 -5.4784 15 6 9.8720 -6.5763 -6.1226 16 1 9.7947 -6.3368 -7.1729 17 6 11.0340 -6.2748 -5.4257 18 7 11.3132 -6.9084 -4.3063 19 14 12.2014 -4.9697 -6.0765 20 1 11.4896 -3.6695 -6.1668 21 1 13.3586 -4.8370 -5.1553 22 1 12.6837 -5.3647 -7.4242 23 6 8.0177 -8.1846 -6.1727 24 6 7.2783 -7.5295 -7.3410 25 6 8.9311 -9.2913 -6.7036 26 7 2.2199 -1.1083 -0.0065 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3633 -0.8876 -0.5179 29 1 -0.3634 0.8924 -0.5096 30 1 1.8390 2.1308 0.0007 31 1 5.3966 -1.8271 0.5001 32 1 4.0440 -2.9841 0.4957 33 1 3.9004 -2.8068 -1.9734 34 1 5.2530 -1.6498 -1.9690 35 1 5.9143 -3.7848 -3.4741 36 1 8.0960 -4.9711 -2.1283 37 1 6.7434 -6.1281 -2.1336 38 1 6.6001 -5.9506 -4.6024 39 1 7.9526 -4.7935 -4.5978 40 1 9.4210 -6.5128 -3.5806 41 1 8.0690 -7.6704 -3.5850 42 1 12.1254 -6.6979 -3.8195 43 1 7.2942 -8.6124 -5.4787 44 1 8.0020 -7.1534 -8.0640 45 1 6.6334 -8.2654 -7.8214 46 1 6.6724 -6.7028 -6.9697 47 1 9.4362 -9.7772 -5.8688 48 1 8.3350 -10.0259 -7.2449 49 1 9.6728 -8.8592 -7.3753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664522180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:15 Heat of formation + Delta-G solvation = -15.759683 kcal Electronic energy + Delta-G solvation = -26237.668960 eV Core-core repulsion = 22518.661749 eV Total energy + Delta-G solvation = -3719.007211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03743 -40.58925 -38.50524 -36.41285 -35.20954 -34.27209 -33.19091 -32.01538 -30.48836 -28.57244 -27.78157 -27.68199 -26.51089 -24.68185 -23.06512 -22.35574 -21.32940 -21.14976 -20.68391 -18.70299 -18.17861 -17.96612 -17.07544 -16.90624 -16.73374 -16.18362 -15.94130 -15.91787 -15.68105 -15.27685 -14.80310 -14.61838 -14.51211 -14.13202 -13.97445 -13.77392 -13.63445 -13.30966 -13.23696 -13.22052 -13.11746 -12.89563 -12.80136 -12.66272 -12.49610 -12.35699 -12.22143 -12.18178 -12.13511 -11.89242 -11.69239 -11.30411 -11.23537 -10.96416 -10.63682 -10.44124 -10.38940 -10.07888 -9.64749 -8.46867 -7.74333 -5.35657 -0.29678 0.40094 0.79028 1.47269 1.49993 1.55366 1.62545 1.75035 2.21007 2.55089 3.07192 3.31669 3.63424 3.66969 3.93329 4.05124 4.15209 4.21122 4.28368 4.35591 4.37280 4.40733 4.52968 4.56048 4.65666 4.73979 4.76219 4.77652 4.83035 4.84217 4.96625 4.98575 5.01237 5.04674 5.12786 5.17445 5.22011 5.24640 5.36597 5.47614 5.51978 5.64390 5.69859 5.77324 5.92428 6.55439 6.56957 6.77903 7.24547 7.26234 7.96949 8.48999 9.20780 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.001899 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.830370 B =14738.232057 C =15533.895723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 C -0.261 4.261 4 S 0.144 5.856 5 C 0.040 3.960 6 C -0.025 4.025 7 C -0.121 4.121 8 C 0.510 3.490 9 O -0.586 6.586 10 N -0.716 5.716 11 C 0.133 3.867 12 C -0.121 4.121 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.244 4.244 16 H 0.056 0.944 17 C -0.039 4.039 18 N -0.918 5.918 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.299 1.299 22 H -0.278 1.278 23 C 0.151 3.849 24 C -0.142 4.142 25 C -0.137 4.137 26 N -0.498 5.498 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.204 0.796 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.415 0.585 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.247 0.753 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.023 0.977 48 H 0.065 0.935 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.861 15.928 5.299 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.400 4.400 4 S 0.399 5.601 5 C -0.237 4.237 6 C -0.066 4.066 7 C -0.162 4.162 8 C 0.298 3.702 9 O -0.467 6.467 10 N -0.368 5.368 11 C 0.008 3.992 12 C -0.161 4.161 13 C 0.021 3.979 14 N -0.314 5.314 15 C -0.375 4.375 16 H 0.073 0.927 17 C -0.236 4.236 18 N -0.563 5.563 19 Si 0.776 3.224 20 H -0.204 1.204 21 H -0.226 1.226 22 H -0.204 1.204 23 C 0.045 3.955 24 C -0.201 4.201 25 C -0.196 4.196 26 N -0.214 5.214 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.221 0.779 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.697 15.603 6.129 25.865 hybrid contribution 0.220 0.476 -0.396 0.657 sum -19.477 16.079 5.732 25.899 Atomic orbital electron populations 1.20440 0.85459 1.04132 1.03613 1.20790 0.99600 0.86450 1.01989 1.27216 0.94823 1.04955 1.12988 1.84011 1.07524 1.01408 1.67108 1.26983 0.93878 0.99240 1.03625 1.19896 0.95837 0.93777 0.97138 1.21584 0.99437 0.97108 0.98079 1.21083 0.81709 0.84285 0.83154 1.90702 1.60034 1.62919 1.33025 1.46015 1.45883 1.35719 1.09175 1.21119 0.91563 0.88699 0.97815 1.22116 1.00097 1.00317 0.93592 1.20725 0.97208 0.93517 0.86417 1.44079 1.32619 1.43398 1.11281 1.18998 0.91846 1.31785 0.94838 0.92690 1.25760 0.97924 1.01243 0.98650 1.70115 1.25431 1.41363 1.19355 0.85661 0.78536 0.80669 0.77509 1.20441 1.22581 1.20409 1.20666 0.92182 0.88952 0.93669 1.22047 0.99224 1.00353 0.98448 1.21955 0.99665 0.98323 0.99666 1.66159 1.05179 1.33120 1.16915 0.90016 0.91224 0.88541 0.77949 0.88766 0.89493 0.86796 0.86262 0.74857 0.93795 0.92421 0.91433 0.92854 0.92034 0.95737 0.94330 0.92520 0.94454 0.91602 0.93337 0.95763 0.91636 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.31 71.23 0.73 -0.11 16 2 C 0.04 0.72 6.74 41.52 0.28 1.00 16 3 C -0.26 -3.45 11.13 66.78 0.74 -2.71 16 4 S 0.14 2.12 23.18 -56.49 -1.31 0.81 16 5 C 0.04 0.77 6.64 88.52 0.59 1.36 16 6 C -0.03 -0.50 5.09 29.85 0.15 -0.35 16 7 C -0.12 -2.14 5.68 29.85 0.17 -1.97 16 8 C 0.51 13.39 7.83 87.66 0.69 14.07 16 9 O -0.59 -20.61 15.98 -3.04 -0.05 -20.66 16 10 N -0.72 -18.18 5.56 -463.06 -2.57 -20.75 16 11 C 0.13 4.31 5.67 86.38 0.49 4.80 16 12 C -0.12 -4.24 5.65 30.59 0.17 -4.07 16 13 C 0.15 6.60 5.28 86.37 0.46 7.05 16 14 N -0.59 -27.56 2.37 -678.07 -1.61 -29.16 16 15 C -0.24 -12.61 8.04 84.03 0.68 -11.93 16 16 H 0.06 2.85 7.14 -2.91 -0.02 2.83 16 17 C -0.04 -2.10 4.96 84.86 0.42 -1.68 16 18 N -0.92 -52.86 11.43 21.65 0.25 -52.62 16 19 Si 0.95 43.85 29.60 68.60 2.03 45.88 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 C 0.15 5.91 3.37 44.99 0.15 6.07 16 24 C -0.14 -4.69 9.19 71.98 0.66 -4.03 16 25 C -0.14 -5.37 9.11 71.98 0.66 -4.72 16 26 N -0.50 -10.69 10.53 -179.41 -1.89 -12.58 16 27 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.59 8.12 -2.39 -0.02 0.57 16 30 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.09 1.99 8.10 -2.39 -0.02 1.97 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 7.98 8.47 -92.71 -0.79 7.19 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 3.23 5.48 -2.39 -0.01 3.22 16 41 H 0.02 1.05 7.88 -2.39 -0.02 1.04 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.06 2.08 7.77 -2.39 -0.02 2.06 16 44 H 0.04 1.33 7.32 -2.39 -0.02 1.31 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 Total: -1.00 -68.42 414.62 2.03 -66.38 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.14 Total: 19.89 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 7.04 Total: 2.80 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -5.82 Total: -115.11 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.31 Total: 0.81 kcal Total: -68.42 2.03 -66.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664522180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.623 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds