Wall clock time and date at job start Tue Mar 31 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47337 * 2 1 4 4 N 1.29426 * 124.80870 * 90.02358 * 3 2 1 5 5 C 1.30938 * 117.36839 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.90738 * 179.97438 * 5 4 3 7 7 C 1.35662 * 114.19040 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12984 * 179.97438 * 7 5 4 9 9 O 1.21689 * 120.00521 * 0.02562 * 8 7 5 10 10 N 1.34784 * 120.00076 * 179.97438 * 8 7 5 11 11 C 1.46498 * 119.99895 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47003 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47310 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.36941 * 120.00007 * 90.00278 * 14 13 12 16 16 H 1.07997 * 119.99432 * 217.14657 * 15 14 13 17 17 C 1.38814 * 119.99945 * 37.14201 * 15 14 13 18 18 N 1.31612 * 120.00332 * 21.26706 * 17 15 14 19 19 Si 1.86804 * 119.99581 * 201.26807 * 17 15 14 20 20 H 1.48494 * 109.47185 * 60.00198 * 19 17 15 21 21 H 1.48497 * 109.46898 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46791 * 299.99626 * 19 17 15 23 23 C 1.46492 * 119.99849 * 269.99601 * 14 13 12 24 24 C 1.53000 * 109.47115 * 114.90617 * 23 14 13 25 25 C 1.53002 * 109.47149 * 234.90663 * 23 14 13 26 26 S 1.70963 * 124.80316 * 270.30113 * 3 2 1 27 27 H 1.09002 * 109.47207 * 60.00030 * 1 2 3 28 28 H 1.09003 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47305 * 299.99893 * 1 2 3 30 30 H 1.09005 * 109.47192 * 239.99606 * 2 1 3 31 31 H 1.09002 * 109.47207 * 119.99970 * 2 1 3 32 32 H 1.08996 * 109.47398 * 270.00307 * 6 5 4 33 33 H 1.09008 * 109.46823 * 29.99786 * 6 5 4 34 34 H 1.08992 * 109.47526 * 149.99762 * 6 5 4 35 35 H 0.97000 * 119.99443 * 0.02562 * 10 8 7 36 36 H 1.08991 * 109.47218 * 60.00241 * 11 10 8 37 37 H 1.09003 * 109.47110 * 300.00072 * 11 10 8 38 38 H 1.09003 * 109.46895 * 299.99774 * 12 11 10 39 39 H 1.09000 * 109.47091 * 59.99998 * 12 11 10 40 40 H 1.09003 * 109.46924 * 299.99716 * 13 12 11 41 41 H 1.09000 * 109.47077 * 59.99950 * 13 12 11 42 42 H 0.96998 * 120.00333 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47595 * 354.90823 * 23 14 13 44 44 H 1.08998 * 109.46841 * 63.31005 * 24 23 14 45 45 H 1.09000 * 109.47266 * 183.31235 * 24 23 14 46 46 H 1.08999 * 109.47025 * 303.31102 * 24 23 14 47 47 H 1.08993 * 109.47082 * 61.62095 * 25 23 14 48 48 H 1.09008 * 109.46824 * 181.62001 * 25 23 14 49 49 H 1.08996 * 109.47222 * 301.61705 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2790 2.1172 1.0627 5 6 2.7123 3.3411 0.8931 6 6 3.0375 4.2610 2.0416 7 6 2.8431 3.7095 -0.4059 8 6 3.3044 5.0141 -0.8927 9 8 3.6124 5.8850 -0.1005 10 7 3.3882 5.2479 -2.2174 11 6 3.8495 6.5507 -2.7035 12 6 3.8508 6.5528 -4.2335 13 6 4.3331 7.9131 -4.7412 14 7 4.3349 7.9149 -6.2063 15 6 3.2179 8.3118 -6.8919 16 1 2.9411 7.8122 -7.8084 17 6 2.4416 9.3562 -6.4087 18 7 2.9589 10.2264 -5.5677 19 14 0.6625 9.5264 -6.9522 20 1 -0.0926 8.3084 -6.5633 21 1 0.0569 10.7145 -6.2988 22 1 0.6092 9.6922 -8.4269 23 6 5.5317 7.4922 -6.9377 24 6 5.2258 6.2138 -7.7207 25 6 5.9525 8.5969 -7.9091 26 16 2.3506 2.3432 -1.4038 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1472 4.8256 2.3183 33 1 3.3738 3.6718 2.8949 34 1 3.8267 4.9506 1.7426 35 1 3.1430 4.5536 -2.8489 36 1 4.8593 6.7377 -2.3387 37 1 3.1813 7.3315 -2.3400 38 1 4.5186 5.7720 -4.5973 39 1 2.8406 6.3659 -4.5980 40 1 3.6656 8.6942 -4.3774 41 1 5.3433 8.0996 -4.3768 42 1 2.4163 10.9560 -5.2298 43 1 6.3404 7.3013 -6.2322 44 1 4.4581 6.4195 -8.4667 45 1 6.1317 5.8666 -8.2178 46 1 4.8698 5.4445 -7.0356 47 1 6.1980 9.4990 -7.3490 48 1 6.8259 8.2707 -8.4739 49 1 5.1333 8.8077 -8.5965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664543605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:34 Heat of formation + Delta-G solvation = 4.161663 kcal Electronic energy + Delta-G solvation = -26929.146879 eV Core-core repulsion = 23211.003523 eV Total energy + Delta-G solvation = -3718.143357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.53286 -39.16924 -36.80494 -35.12872 -34.59074 -32.53946 -31.67948 -31.05995 -29.24284 -28.07027 -26.19410 -25.83986 -25.24831 -23.36961 -22.25482 -21.51096 -20.95461 -19.57607 -19.37355 -18.14062 -16.92505 -16.36082 -15.85869 -15.67037 -15.15444 -15.03696 -14.77240 -14.49207 -14.13162 -14.01170 -13.79772 -13.60084 -13.39345 -13.14472 -12.87821 -12.67846 -12.41993 -12.24542 -12.08531 -11.75995 -11.62345 -11.55507 -11.49747 -11.44344 -11.30861 -10.98406 -10.76179 -10.66851 -10.45475 -10.24363 -10.14818 -9.95367 -9.79818 -9.74049 -9.59929 -9.51212 -9.06630 -8.83738 -8.47101 -6.55795 -5.77702 -3.35463 0.02157 0.91764 1.33019 2.24525 3.11866 3.16921 3.35753 3.42629 3.43639 3.65635 4.43948 4.47164 4.67901 4.73365 4.73643 4.93716 5.12402 5.21371 5.35697 5.36131 5.45762 5.55095 5.61471 5.62930 5.70837 5.74494 5.77959 5.93702 6.00357 6.13530 6.18958 6.30070 6.37310 6.38251 6.43826 6.64712 6.71146 6.71923 6.78236 6.78967 7.09943 7.20756 7.33724 7.35239 7.51887 7.68034 7.84049 8.15362 8.53565 9.20562 9.83464 10.41981 11.22235 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002437 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.836414 B =11485.375720 C =11518.310944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.064 3.936 4 N -0.477 5.477 5 C 0.147 3.853 6 C -0.089 4.089 7 C -0.296 4.296 8 C 0.592 3.408 9 O -0.525 6.525 10 N -0.718 5.718 11 C 0.122 3.878 12 C -0.146 4.146 13 C 0.151 3.849 14 N -0.579 5.579 15 C -0.253 4.253 16 H 0.059 0.941 17 C 0.012 3.988 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.162 3.838 24 C -0.154 4.154 25 C -0.145 4.145 26 S 0.159 5.841 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.025 0.975 42 H 0.255 0.745 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.029 0.971 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -19.333 9.683 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.212 4.212 4 N -0.192 5.192 5 C 0.009 3.991 6 C -0.148 4.148 7 C -0.420 4.420 8 C 0.377 3.623 9 O -0.403 6.403 10 N -0.369 5.369 11 C -0.001 4.001 12 C -0.187 4.187 13 C 0.024 3.976 14 N -0.299 5.299 15 C -0.382 4.382 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.055 3.945 24 C -0.213 4.213 25 C -0.204 4.204 26 S 0.417 5.583 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.808 -18.957 9.674 21.298 hybrid contribution -0.988 0.253 0.034 1.021 sum -1.796 -18.704 9.708 21.149 Atomic orbital electron populations 1.21790 0.93097 1.02850 1.02952 1.20315 0.97014 0.87114 1.04654 1.27419 1.00821 1.01779 0.91187 1.66073 1.15868 1.05944 1.31287 1.20678 0.94220 0.90413 0.93742 1.20669 1.03784 0.96978 0.93386 1.25561 1.18372 1.00834 0.97199 1.16694 0.77958 0.84818 0.82869 1.90786 1.49913 1.44761 1.54889 1.46110 1.67394 1.17567 1.05803 1.21559 0.99716 0.82874 0.95998 1.22526 1.02407 1.02848 0.90916 1.20811 0.98856 0.93775 0.84173 1.43848 1.09947 1.75813 1.00285 1.18852 1.00713 1.10775 1.07902 0.92340 1.25150 0.99162 0.94686 0.99811 1.69965 1.34895 1.13281 1.34732 0.86533 0.85762 0.77090 0.78367 1.21030 1.21669 1.20813 1.20413 0.89227 0.92085 0.92778 1.22207 0.99749 0.98979 1.00405 1.22035 0.99147 0.99508 0.99722 1.83914 1.58530 1.04445 1.11449 0.92156 0.91087 0.91813 0.89252 0.88422 0.90082 0.90851 0.88015 0.77036 0.91593 0.91092 0.93214 0.91615 0.88491 0.95682 0.93525 0.93737 0.92965 0.94628 0.93804 0.93327 0.95216 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.15 0.37 -0.48 16 2 C -0.05 -0.32 6.51 -27.89 -0.18 -0.50 16 3 C 0.06 0.63 6.64 -13.29 -0.09 0.54 16 4 N -0.48 -5.83 10.50 -7.70 -0.08 -5.91 16 5 C 0.15 1.93 6.79 -83.89 -0.57 1.36 16 6 C -0.09 -1.06 9.69 36.01 0.35 -0.71 16 7 C -0.30 -3.95 6.48 -37.10 -0.24 -4.19 16 8 C 0.59 9.17 7.78 -12.85 -0.10 9.07 16 9 O -0.52 -9.45 14.27 5.20 0.07 -9.38 16 10 N -0.72 -10.51 5.55 -61.62 -0.34 -10.85 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.15 3.31 5.28 -4.04 -0.02 3.29 16 14 N -0.58 -13.47 2.37 -165.66 -0.39 -13.86 16 15 C -0.25 -6.50 8.04 -15.06 -0.12 -6.62 16 16 H 0.06 1.52 7.14 -52.49 -0.37 1.15 16 17 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 18 N -0.89 -24.70 11.43 55.49 0.63 -24.07 16 19 Si 0.89 21.08 29.60 -169.99 -5.03 16.04 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.16 3.27 3.37 -67.93 -0.23 3.04 16 24 C -0.15 -2.75 9.19 37.16 0.34 -2.41 16 25 C -0.15 -2.90 9.11 37.16 0.34 -2.56 16 26 S 0.16 1.60 22.31 -107.50 -2.40 -0.80 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.10 1.35 6.01 -51.93 -0.31 1.03 16 35 H 0.40 5.01 7.66 -40.82 -0.31 4.70 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.10 2.45 5.48 -51.93 -0.28 2.16 16 41 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.04 0.86 7.77 -51.93 -0.40 0.45 16 44 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 49 H 0.06 1.25 7.50 -51.93 -0.39 0.86 16 LS Contribution 409.61 15.07 6.17 6.17 Total: -1.00 -29.93 409.61 -10.12 -40.05 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.34 Total: 3.34 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.41 Total: -0.73 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.18 Total: -54.69 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.40 Total: -0.80 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.93 -10.12 -40.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664543605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds