Wall clock time and date at job start Tue Mar 31 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47337 * 2 1 4 4 N 1.29426 * 124.80870 * 90.02358 * 3 2 1 5 5 C 1.30938 * 117.36839 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.90738 * 179.97438 * 5 4 3 7 7 C 1.35662 * 114.19040 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12984 * 179.97438 * 7 5 4 9 9 O 1.21689 * 120.00521 * 0.02562 * 8 7 5 10 10 N 1.34784 * 120.00076 * 179.97438 * 8 7 5 11 11 C 1.46498 * 119.99895 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47003 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47310 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.36941 * 120.00007 * 90.00278 * 14 13 12 16 16 H 1.07997 * 119.99432 * 217.14657 * 15 14 13 17 17 C 1.38814 * 119.99945 * 37.14201 * 15 14 13 18 18 N 1.31612 * 120.00332 * 21.26706 * 17 15 14 19 19 Si 1.86804 * 119.99581 * 201.26807 * 17 15 14 20 20 H 1.48494 * 109.47185 * 60.00198 * 19 17 15 21 21 H 1.48497 * 109.46898 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46791 * 299.99626 * 19 17 15 23 23 C 1.46492 * 119.99849 * 269.99601 * 14 13 12 24 24 C 1.53000 * 109.47115 * 114.90617 * 23 14 13 25 25 C 1.53002 * 109.47149 * 234.90663 * 23 14 13 26 26 S 1.70963 * 124.80316 * 270.30113 * 3 2 1 27 27 H 1.09002 * 109.47207 * 60.00030 * 1 2 3 28 28 H 1.09003 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47305 * 299.99893 * 1 2 3 30 30 H 1.09005 * 109.47192 * 239.99606 * 2 1 3 31 31 H 1.09002 * 109.47207 * 119.99970 * 2 1 3 32 32 H 1.08996 * 109.47398 * 270.00307 * 6 5 4 33 33 H 1.09008 * 109.46823 * 29.99786 * 6 5 4 34 34 H 1.08992 * 109.47526 * 149.99762 * 6 5 4 35 35 H 0.97000 * 119.99443 * 0.02562 * 10 8 7 36 36 H 1.08991 * 109.47218 * 60.00241 * 11 10 8 37 37 H 1.09003 * 109.47110 * 300.00072 * 11 10 8 38 38 H 1.09003 * 109.46895 * 299.99774 * 12 11 10 39 39 H 1.09000 * 109.47091 * 59.99998 * 12 11 10 40 40 H 1.09003 * 109.46924 * 299.99716 * 13 12 11 41 41 H 1.09000 * 109.47077 * 59.99950 * 13 12 11 42 42 H 0.96998 * 120.00333 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47595 * 354.90823 * 23 14 13 44 44 H 1.08998 * 109.46841 * 63.31005 * 24 23 14 45 45 H 1.09000 * 109.47266 * 183.31235 * 24 23 14 46 46 H 1.08999 * 109.47025 * 303.31102 * 24 23 14 47 47 H 1.08993 * 109.47082 * 61.62095 * 25 23 14 48 48 H 1.09008 * 109.46824 * 181.62001 * 25 23 14 49 49 H 1.08996 * 109.47222 * 301.61705 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2790 2.1172 1.0627 5 6 2.7123 3.3411 0.8931 6 6 3.0375 4.2610 2.0416 7 6 2.8431 3.7095 -0.4059 8 6 3.3044 5.0141 -0.8927 9 8 3.6124 5.8850 -0.1005 10 7 3.3882 5.2479 -2.2174 11 6 3.8495 6.5507 -2.7035 12 6 3.8508 6.5528 -4.2335 13 6 4.3331 7.9131 -4.7412 14 7 4.3349 7.9149 -6.2063 15 6 3.2179 8.3118 -6.8919 16 1 2.9411 7.8122 -7.8084 17 6 2.4416 9.3562 -6.4087 18 7 2.9589 10.2264 -5.5677 19 14 0.6625 9.5264 -6.9522 20 1 -0.0926 8.3084 -6.5633 21 1 0.0569 10.7145 -6.2988 22 1 0.6092 9.6922 -8.4269 23 6 5.5317 7.4922 -6.9377 24 6 5.2258 6.2138 -7.7207 25 6 5.9525 8.5969 -7.9091 26 16 2.3506 2.3432 -1.4038 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1472 4.8256 2.3183 33 1 3.3738 3.6718 2.8949 34 1 3.8267 4.9506 1.7426 35 1 3.1430 4.5536 -2.8489 36 1 4.8593 6.7377 -2.3387 37 1 3.1813 7.3315 -2.3400 38 1 4.5186 5.7720 -4.5973 39 1 2.8406 6.3659 -4.5980 40 1 3.6656 8.6942 -4.3774 41 1 5.3433 8.0996 -4.3768 42 1 2.4163 10.9560 -5.2298 43 1 6.3404 7.3013 -6.2322 44 1 4.4581 6.4195 -8.4667 45 1 6.1317 5.8666 -8.2178 46 1 4.8698 5.4445 -7.0356 47 1 6.1980 9.4990 -7.3490 48 1 6.8259 8.2707 -8.4739 49 1 5.1333 8.8077 -8.5965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664543605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:34 Heat of formation + Delta-G solvation = -12.944682 kcal Electronic energy + Delta-G solvation = -26929.888666 eV Core-core repulsion = 23211.003523 eV Total energy + Delta-G solvation = -3718.885144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52294 -40.30623 -38.50616 -36.47892 -35.26661 -34.29135 -33.29263 -31.91869 -30.76906 -29.31249 -27.71924 -27.02867 -26.45563 -24.96540 -22.95993 -22.67396 -22.45552 -21.29502 -20.51965 -19.05320 -18.16762 -17.95430 -17.07781 -16.92835 -16.70182 -16.19738 -16.03939 -15.61048 -15.55258 -15.20709 -14.89945 -14.78526 -14.53583 -14.46843 -14.05994 -13.96297 -13.55748 -13.33106 -13.25567 -13.13476 -12.96374 -12.82644 -12.69833 -12.59452 -12.51747 -12.43766 -12.37951 -12.16121 -12.09374 -11.90375 -11.70022 -11.32923 -11.28613 -11.17558 -10.79712 -10.66892 -10.44990 -10.23698 -9.80055 -8.48085 -7.75453 -5.36602 -0.88511 0.07141 0.45663 1.28446 1.46350 1.49390 1.54483 1.96995 1.99578 2.54075 2.89657 3.30634 3.61196 3.66044 3.74938 3.97364 4.15813 4.20797 4.26753 4.29687 4.37041 4.50343 4.53020 4.63830 4.64767 4.73169 4.75184 4.81463 4.83209 4.91355 4.97583 4.98852 5.03996 5.08444 5.16283 5.20562 5.22583 5.24643 5.31223 5.35593 5.48232 5.64204 5.69661 5.76341 5.90904 6.29176 6.52398 6.54612 6.97315 7.25032 7.96007 8.47857 9.19806 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002437 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.836414 B =11485.375720 C =11518.310944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.072 3.928 4 N -0.499 5.499 5 C 0.144 3.856 6 C -0.087 4.087 7 C -0.332 4.332 8 C 0.591 3.409 9 O -0.558 6.558 10 N -0.711 5.711 11 C 0.134 3.866 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.593 5.593 15 C -0.244 4.244 16 H 0.056 0.944 17 C -0.037 4.037 18 N -0.918 5.918 19 Si 0.945 3.055 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.277 1.277 23 C 0.152 3.848 24 C -0.142 4.142 25 C -0.137 4.137 26 S 0.205 5.795 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.024 0.976 48 H 0.065 0.935 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -22.690 8.917 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.203 4.203 4 N -0.214 5.214 5 C 0.005 3.995 6 C -0.146 4.146 7 C -0.456 4.456 8 C 0.378 3.622 9 O -0.439 6.439 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.163 4.163 13 C 0.023 3.977 14 N -0.314 5.314 15 C -0.375 4.375 16 H 0.073 0.927 17 C -0.234 4.234 18 N -0.562 5.562 19 Si 0.775 3.225 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.203 1.203 23 C 0.046 3.954 24 C -0.201 4.201 25 C -0.196 4.196 26 S 0.464 5.536 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.084 0.916 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.826 -22.363 8.868 24.071 hybrid contribution -0.936 1.186 0.261 1.533 sum -1.762 -21.177 9.129 23.128 Atomic orbital electron populations 1.21798 0.92436 1.04119 1.02168 1.20585 0.97381 0.84921 1.06389 1.28186 0.98494 1.02856 0.90754 1.66152 1.17279 1.05739 1.32277 1.20878 0.93690 0.90972 0.93944 1.20624 1.03296 0.96872 0.93820 1.25374 1.20678 1.01238 0.98292 1.16965 0.77255 0.85413 0.82565 1.90764 1.51375 1.46184 1.55619 1.45910 1.67304 1.17028 1.06003 1.21241 0.99353 0.83414 0.94942 1.22162 1.01713 1.00914 0.91547 1.20702 0.98266 0.94848 0.83865 1.44081 1.10550 1.75960 1.00807 1.18997 1.01326 1.09762 1.07426 0.92678 1.25735 1.02120 0.94915 1.00631 1.70102 1.35670 1.13980 1.36458 0.85686 0.82260 0.76611 0.77987 1.20580 1.22560 1.20312 1.20668 0.88459 0.93139 0.93163 1.22053 1.00748 0.97524 0.99811 1.21953 0.99796 0.98617 0.99241 1.83669 1.57472 1.02279 1.10198 0.92291 0.88838 0.93260 0.86644 0.87541 0.89930 0.89345 0.89680 0.75721 0.91476 0.93174 0.91308 0.92913 0.91954 0.95419 0.94309 0.92444 0.94446 0.91549 0.93365 0.95722 0.91621 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.55 16 2 C -0.05 -0.49 6.51 29.84 0.19 -0.30 16 3 C 0.07 1.27 6.64 88.46 0.59 1.85 16 4 N -0.50 -11.54 10.50 -178.29 -1.87 -13.41 16 5 C 0.14 3.72 6.79 42.09 0.29 4.01 16 6 C -0.09 -2.10 9.69 71.24 0.69 -1.41 16 7 C -0.33 -8.68 6.48 23.88 0.15 -8.52 16 8 C 0.59 18.43 7.78 86.45 0.67 19.11 16 9 O -0.56 -20.76 14.27 -4.31 -0.06 -20.82 16 10 N -0.71 -20.50 5.55 -467.08 -2.59 -23.10 16 11 C 0.13 4.47 5.67 86.38 0.49 4.96 16 12 C -0.12 -4.37 5.65 30.59 0.17 -4.20 16 13 C 0.15 6.65 5.28 86.38 0.46 7.10 16 14 N -0.59 -27.47 2.37 -678.03 -1.61 -29.08 16 15 C -0.24 -12.61 8.04 84.03 0.68 -11.93 16 16 H 0.06 2.86 7.14 -2.91 -0.02 2.84 16 17 C -0.04 -2.00 4.96 84.86 0.42 -1.57 16 18 N -0.92 -52.73 11.43 21.65 0.25 -52.48 16 19 Si 0.95 43.91 29.60 68.60 2.03 45.94 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.15 5.88 3.37 44.99 0.15 6.03 16 24 C -0.14 -4.68 9.19 71.98 0.66 -4.02 16 25 C -0.14 -5.33 9.11 71.98 0.66 -4.67 16 26 S 0.21 3.68 22.31 -56.49 -1.26 2.42 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 34 H 0.08 2.35 6.01 -2.39 -0.01 2.33 16 35 H 0.41 9.75 7.66 -92.71 -0.71 9.04 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 3.26 5.48 -2.39 -0.01 3.25 16 41 H 0.03 1.18 7.88 -2.39 -0.02 1.16 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 43 H 0.06 2.08 7.77 -2.39 -0.02 2.06 16 44 H 0.04 1.33 7.32 -2.39 -0.02 1.31 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.04 1.55 7.50 -2.39 -0.02 1.54 16 Total: -1.00 -66.15 409.61 2.10 -64.05 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.23 Total: 20.59 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.98 Total: 5.88 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -5.82 Total: -118.07 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.26 Total: 2.42 kcal Total: -66.15 2.10 -64.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664543605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.105 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds