Wall clock time and date at job start Tue Mar 31 2020 23:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.53001 * 109.46913 * 119.99954 * 2 1 3 5 5 H 1.09003 * 109.47254 * 299.99797 * 4 2 1 6 6 C 1.52999 * 109.47200 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.47192 * 184.99963 * 6 4 2 8 8 C 1.34777 * 119.99724 * 180.02562 * 7 6 4 9 9 O 1.21633 * 120.00239 * 359.97438 * 8 7 6 10 10 C 1.47265 * 119.99770 * 179.72640 * 8 7 6 11 11 C 1.35210 * 123.14161 * 179.97438 * 10 8 7 12 12 S 1.70947 * 108.82468 * 179.86674 * 11 10 8 13 13 C 1.70768 * 91.13012 * 0.33288 * 12 11 10 14 14 C 1.50701 * 124.72120 * 179.78677 * 13 12 11 15 15 C 1.53005 * 109.46686 * 240.02186 * 14 13 12 16 16 C 1.53003 * 109.46698 * 0.02562 * 14 13 12 17 17 C 1.52998 * 109.47406 * 120.01855 * 14 13 12 18 18 N 1.28647 * 110.56127 * 359.80045 * 13 12 11 19 19 N 1.46494 * 109.47195 * 59.99745 * 4 2 1 20 20 C 1.36938 * 120.00415 * 275.00221 * 19 4 2 21 21 H 1.08003 * 119.99566 * 359.97438 * 20 19 4 22 22 C 1.38816 * 120.00152 * 180.02562 * 20 19 4 23 23 N 1.31622 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47190 * 59.99517 * 24 22 20 26 26 H 1.48496 * 109.47134 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47050 * 299.99750 * 24 22 20 28 28 H 1.09003 * 109.46995 * 300.00090 * 1 2 3 29 29 H 1.08997 * 109.46593 * 59.99629 * 1 2 3 30 30 H 1.08994 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47585 * 239.99822 * 2 1 3 32 32 H 1.08994 * 109.47023 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46980 * 299.99814 * 3 2 1 34 34 H 1.09003 * 109.47251 * 60.00066 * 3 2 1 35 35 H 1.09003 * 109.46690 * 65.00127 * 6 4 2 36 36 H 1.08993 * 109.47209 * 305.00154 * 6 4 2 37 37 H 0.97000 * 119.99792 * 359.97438 * 7 6 4 38 38 H 1.07992 * 125.58324 * 0.02562 * 11 10 8 39 39 H 1.08998 * 109.47362 * 60.00169 * 15 14 13 40 40 H 1.09002 * 109.46472 * 179.97438 * 15 14 13 41 41 H 1.08996 * 109.46851 * 299.99136 * 15 14 13 42 42 H 1.08998 * 109.47220 * 60.00347 * 16 14 13 43 43 H 1.09000 * 109.46822 * 180.02562 * 16 14 13 44 44 H 1.08994 * 109.47331 * 300.00046 * 16 14 13 45 45 H 1.08996 * 109.47097 * 60.00278 * 17 14 13 46 46 H 1.09000 * 109.46790 * 179.97438 * 17 14 13 47 47 H 1.08998 * 109.47029 * 299.99969 * 17 14 13 48 48 H 0.97009 * 119.99911 * 95.00309 * 19 4 2 49 49 H 0.97000 * 119.99210 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5141 2.3805 8 6 5.3833 -1.6554 2.5823 9 8 6.1738 -1.1255 1.8248 10 6 5.8741 -2.4468 3.7232 11 6 7.1879 -2.6302 3.9849 12 16 7.3414 -3.5970 5.3863 13 6 5.6439 -3.7087 5.5363 14 6 4.9263 -4.4677 6.6225 15 6 4.0540 -5.5560 5.9932 16 6 5.9519 -5.1127 7.5568 17 6 4.0444 -3.5050 7.4202 18 7 5.0630 -3.0550 4.5927 19 7 1.5516 -2.1024 1.2493 20 6 0.3100 -2.3897 1.7504 21 1 -0.3090 -1.5980 2.1460 22 6 -0.1525 -3.6985 1.7509 23 7 0.6022 -4.6633 1.2693 24 14 -1.8458 -4.0904 2.4352 25 1 -2.8751 -3.3464 1.6655 26 1 -2.1007 -5.5488 2.3205 27 1 -1.9081 -3.6873 3.8632 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.9337 0.3018 1.3384 36 1 3.9330 -1.1564 0.3177 37 1 3.4278 -1.9363 2.9848 38 1 8.0061 -2.2293 3.4052 39 1 4.6823 -6.2419 5.4250 40 1 3.5353 -6.1052 6.7790 41 1 3.3234 -5.0963 5.3277 42 1 6.5732 -4.3374 8.0051 43 1 5.4328 -5.6621 8.3423 44 1 6.5802 -5.7985 6.9887 45 1 3.3138 -3.0454 6.7546 46 1 3.5250 -4.0542 8.2055 47 1 4.6658 -2.7298 7.8684 48 1 2.1078 -2.8135 0.8943 49 1 0.2788 -5.5778 1.2693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667503938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:07 Heat of formation + Delta-G solvation = -7.938635 kcal Electronic energy + Delta-G solvation = -28082.806604 eV Core-core repulsion = 24364.138539 eV Total energy + Delta-G solvation = -3718.668065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41021 -38.79796 -37.23961 -36.53174 -33.80994 -33.07410 -30.41506 -30.06365 -28.22375 -27.59180 -27.28594 -26.21166 -25.55874 -23.85874 -22.75685 -21.42011 -19.90124 -19.43923 -19.18090 -18.14221 -17.18243 -16.40594 -15.71951 -15.44633 -15.22860 -15.00649 -14.46285 -14.26302 -14.06681 -13.85121 -13.66177 -13.40669 -13.34995 -13.14156 -12.73681 -12.46631 -12.28801 -12.10599 -12.00013 -11.84337 -11.75174 -11.63741 -11.60125 -11.14559 -11.04374 -11.01436 -10.91624 -10.79070 -10.62541 -10.27875 -10.09203 -9.95788 -9.81769 -9.66534 -9.59830 -9.49732 -8.94139 -8.87150 -8.51147 -6.98134 -5.76708 -3.05726 0.55954 1.22119 1.62341 2.13714 3.42253 3.47635 3.48129 3.57040 3.64856 3.93217 4.57264 4.58643 4.75092 4.81845 5.12368 5.22285 5.33495 5.37674 5.37705 5.43132 5.47734 5.57849 5.66277 5.66323 5.72146 5.76820 5.79441 5.86230 5.90107 5.94270 6.01881 6.05494 6.21015 6.24406 6.27388 6.38641 6.40362 6.48660 6.56810 6.66020 6.70922 6.94946 7.10363 7.32822 7.49874 7.70108 8.03962 8.39985 8.56685 9.51994 10.06914 10.42934 11.44988 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.004057 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.919579 B = 6899.746015 C = 9215.678139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.171 3.829 5 H 0.053 0.947 6 C 0.112 3.888 7 N -0.690 5.690 8 C 0.587 3.413 9 O -0.552 6.552 10 C 0.021 3.979 11 C -0.237 4.237 12 S 0.190 5.810 13 C 0.044 3.956 14 C 0.012 3.988 15 C -0.138 4.138 16 C -0.154 4.154 17 C -0.136 4.136 18 N -0.429 5.429 19 N -0.720 5.720 20 C -0.235 4.235 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.420 0.580 38 H 0.186 0.814 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.146 2.342 11.409 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.341 5.341 8 C 0.370 3.630 9 O -0.431 6.431 10 C -0.114 4.114 11 C -0.378 4.378 12 S 0.449 5.551 13 C -0.237 4.237 14 C 0.009 3.991 15 C -0.196 4.196 16 C -0.212 4.212 17 C -0.194 4.194 18 N -0.143 5.143 19 N -0.361 5.361 20 C -0.366 4.366 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.258 0.742 38 H 0.203 0.797 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.759 2.344 11.454 17.306 hybrid contribution -1.384 -0.148 -0.483 1.474 sum 11.375 2.196 10.972 15.956 Atomic orbital electron populations 1.21818 0.94915 1.03935 0.98954 1.21730 0.96933 0.94372 1.00040 1.21943 1.00486 0.97363 1.00912 1.20534 0.89150 0.88307 0.96006 0.92880 1.21813 0.95906 0.94798 0.88732 1.45846 1.06329 1.51460 1.30449 1.17084 0.83028 0.79915 0.82960 1.90767 1.55955 1.49521 1.46887 1.20513 0.89159 1.03146 0.98602 1.26581 1.01571 1.06073 1.03622 1.82668 1.08420 1.43976 1.20076 1.27217 0.94394 1.02148 0.99931 1.19245 0.94924 0.94584 0.90397 1.21877 0.99641 0.96972 1.01142 1.22036 0.98533 1.01051 0.99562 1.21856 0.99420 0.98385 0.99763 1.66856 1.36598 1.08368 1.02492 1.42438 1.18092 1.01806 1.73791 1.19129 0.92697 0.92335 1.32481 0.91049 1.24705 0.98167 0.95868 1.01804 1.69660 1.36785 0.99821 1.51307 0.86365 0.84545 0.77004 0.78839 1.21338 1.21845 1.21320 0.94081 0.95021 0.89454 0.91883 0.93052 0.93564 0.93199 0.91446 0.91723 0.74194 0.79676 0.92549 0.91671 0.90508 0.91947 0.90603 0.91846 0.90937 0.91602 0.92701 0.78084 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.26 37.16 0.31 -2.24 16 2 C -0.11 -1.90 2.69 -90.62 -0.24 -2.14 16 3 C -0.15 -2.15 8.84 37.16 0.33 -1.83 16 4 C 0.17 3.26 2.18 -67.93 -0.15 3.11 16 5 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 6 C 0.11 2.02 4.73 -4.04 -0.02 2.00 16 7 N -0.69 -12.93 5.38 -61.43 -0.33 -13.27 16 8 C 0.59 11.04 7.80 -12.59 -0.10 10.94 16 9 O -0.55 -11.31 16.71 5.25 0.09 -11.23 16 10 C 0.02 0.34 6.70 -84.52 -0.57 -0.22 16 11 C -0.24 -3.21 10.62 29.65 0.31 -2.89 16 12 S 0.19 1.99 21.28 -107.50 -2.29 -0.30 16 13 C 0.04 0.56 5.74 -13.61 -0.08 0.49 16 14 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 15 C -0.14 -1.64 8.45 37.16 0.31 -1.32 16 16 C -0.15 -1.18 7.53 37.16 0.28 -0.90 16 17 C -0.14 -1.41 8.45 37.16 0.31 -1.10 16 18 N -0.43 -6.90 10.10 -8.51 -0.09 -6.99 16 19 N -0.72 -16.81 4.44 -53.43 -0.24 -17.05 16 20 C -0.24 -6.05 7.57 -15.06 -0.11 -6.16 16 21 H 0.07 1.80 7.40 -52.48 -0.39 1.41 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 24 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.13 6.71 -51.93 -0.35 0.78 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.42 8.33 7.66 -40.82 -0.31 8.02 16 38 H 0.19 2.27 8.03 -52.49 -0.42 1.85 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.43 7.91 -51.93 -0.41 0.01 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.46 7.91 -51.93 -0.41 0.05 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16 49 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -29.91 406.09 -9.01 -38.92 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -8.31 Total: 16.02 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 0.34 Total: -2.64 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.07 Total: -63.56 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.29 Total: -0.30 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.91 -9.01 -38.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667503938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.978 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds