Wall clock time and date at job start Tue Mar 31 2020 23:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.53001 * 109.46913 * 119.99954 * 2 1 3 5 5 H 1.09003 * 109.47254 * 299.99797 * 4 2 1 6 6 C 1.52999 * 109.47200 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.47192 * 184.99963 * 6 4 2 8 8 C 1.34777 * 119.99724 * 180.02562 * 7 6 4 9 9 O 1.21633 * 120.00239 * 359.97438 * 8 7 6 10 10 C 1.47265 * 119.99770 * 179.72640 * 8 7 6 11 11 C 1.35210 * 123.14161 * 179.97438 * 10 8 7 12 12 S 1.70947 * 108.82468 * 179.86674 * 11 10 8 13 13 C 1.70768 * 91.13012 * 0.33288 * 12 11 10 14 14 C 1.50701 * 124.72120 * 179.78677 * 13 12 11 15 15 C 1.53005 * 109.46686 * 240.02186 * 14 13 12 16 16 C 1.53003 * 109.46698 * 0.02562 * 14 13 12 17 17 C 1.52998 * 109.47406 * 120.01855 * 14 13 12 18 18 N 1.28647 * 110.56127 * 359.80045 * 13 12 11 19 19 N 1.46494 * 109.47195 * 59.99745 * 4 2 1 20 20 C 1.36938 * 120.00415 * 275.00221 * 19 4 2 21 21 H 1.08003 * 119.99566 * 359.97438 * 20 19 4 22 22 C 1.38816 * 120.00152 * 180.02562 * 20 19 4 23 23 N 1.31622 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47190 * 59.99517 * 24 22 20 26 26 H 1.48496 * 109.47134 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47050 * 299.99750 * 24 22 20 28 28 H 1.09003 * 109.46995 * 300.00090 * 1 2 3 29 29 H 1.08997 * 109.46593 * 59.99629 * 1 2 3 30 30 H 1.08994 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47585 * 239.99822 * 2 1 3 32 32 H 1.08994 * 109.47023 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46980 * 299.99814 * 3 2 1 34 34 H 1.09003 * 109.47251 * 60.00066 * 3 2 1 35 35 H 1.09003 * 109.46690 * 65.00127 * 6 4 2 36 36 H 1.08993 * 109.47209 * 305.00154 * 6 4 2 37 37 H 0.97000 * 119.99792 * 359.97438 * 7 6 4 38 38 H 1.07992 * 125.58324 * 0.02562 * 11 10 8 39 39 H 1.08998 * 109.47362 * 60.00169 * 15 14 13 40 40 H 1.09002 * 109.46472 * 179.97438 * 15 14 13 41 41 H 1.08996 * 109.46851 * 299.99136 * 15 14 13 42 42 H 1.08998 * 109.47220 * 60.00347 * 16 14 13 43 43 H 1.09000 * 109.46822 * 180.02562 * 16 14 13 44 44 H 1.08994 * 109.47331 * 300.00046 * 16 14 13 45 45 H 1.08996 * 109.47097 * 60.00278 * 17 14 13 46 46 H 1.09000 * 109.46790 * 179.97438 * 17 14 13 47 47 H 1.08998 * 109.47029 * 299.99969 * 17 14 13 48 48 H 0.97009 * 119.99911 * 95.00309 * 19 4 2 49 49 H 0.97000 * 119.99210 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5141 2.3805 8 6 5.3833 -1.6554 2.5823 9 8 6.1738 -1.1255 1.8248 10 6 5.8741 -2.4468 3.7232 11 6 7.1879 -2.6302 3.9849 12 16 7.3414 -3.5970 5.3863 13 6 5.6439 -3.7087 5.5363 14 6 4.9263 -4.4677 6.6225 15 6 4.0540 -5.5560 5.9932 16 6 5.9519 -5.1127 7.5568 17 6 4.0444 -3.5050 7.4202 18 7 5.0630 -3.0550 4.5927 19 7 1.5516 -2.1024 1.2493 20 6 0.3100 -2.3897 1.7504 21 1 -0.3090 -1.5980 2.1460 22 6 -0.1525 -3.6985 1.7509 23 7 0.6022 -4.6633 1.2693 24 14 -1.8458 -4.0904 2.4352 25 1 -2.8751 -3.3464 1.6655 26 1 -2.1007 -5.5488 2.3205 27 1 -1.9081 -3.6873 3.8632 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.9337 0.3018 1.3384 36 1 3.9330 -1.1564 0.3177 37 1 3.4278 -1.9363 2.9848 38 1 8.0061 -2.2293 3.4052 39 1 4.6823 -6.2419 5.4250 40 1 3.5353 -6.1052 6.7790 41 1 3.3234 -5.0963 5.3277 42 1 6.5732 -4.3374 8.0051 43 1 5.4328 -5.6621 8.3423 44 1 6.5802 -5.7985 6.9887 45 1 3.3138 -3.0454 6.7546 46 1 3.5250 -4.0542 8.2055 47 1 4.6658 -2.7298 7.8684 48 1 2.1078 -2.8135 0.8943 49 1 0.2788 -5.5778 1.2693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667503938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:07 Heat of formation + Delta-G solvation = -27.168245 kcal Electronic energy + Delta-G solvation = -28083.640463 eV Core-core repulsion = 24364.138539 eV Total energy + Delta-G solvation = -3719.501924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60718 -40.11729 -38.75722 -37.49841 -35.33591 -34.91719 -32.20749 -31.20796 -29.79144 -28.29855 -28.18155 -27.55622 -26.84921 -25.51848 -24.18377 -22.87090 -21.27809 -20.60640 -20.40833 -19.42501 -18.95560 -17.71040 -17.01147 -16.94606 -16.54434 -16.33584 -15.83312 -15.52006 -15.41055 -15.14976 -14.99536 -14.92561 -14.56579 -14.37068 -14.18357 -13.77869 -13.45533 -13.18509 -13.10198 -12.91656 -12.82286 -12.78799 -12.72840 -12.59124 -12.52738 -12.49815 -12.30296 -12.03769 -11.97194 -11.89745 -11.79394 -11.48059 -11.30129 -11.24611 -10.81602 -10.69998 -10.60087 -10.18607 -9.79271 -8.96122 -7.86529 -5.14038 -0.50458 0.27127 0.59778 0.92478 1.48831 1.50073 1.55580 2.22675 2.31795 2.59569 2.90185 3.46146 3.61429 3.83543 3.89498 3.93641 3.96927 4.08404 4.20423 4.28036 4.29760 4.33637 4.41763 4.60110 4.68790 4.72291 4.75494 4.81344 4.85597 4.91456 4.95907 4.98271 4.99337 5.03921 5.06664 5.14280 5.24603 5.27549 5.29418 5.37385 5.43106 5.47462 5.58630 5.63732 5.76795 6.32294 6.33861 6.64638 7.09259 7.40075 8.10825 8.36506 9.36239 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.004057 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.919579 B = 6899.746015 C = 9215.678139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.053 0.947 6 C 0.120 3.880 7 N -0.695 5.695 8 C 0.583 3.417 9 O -0.576 6.576 10 C -0.015 4.015 11 C -0.243 4.243 12 S 0.299 5.701 13 C 0.020 3.980 14 C 0.011 3.989 15 C -0.135 4.135 16 C -0.151 4.151 17 C -0.133 4.133 18 N -0.465 5.465 19 N -0.727 5.727 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.959 3.041 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.280 1.280 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.196 0.804 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.371 0.629 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.425 3.117 13.397 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.071 0.929 6 C -0.004 4.004 7 N -0.344 5.344 8 C 0.368 3.632 9 O -0.458 6.458 10 C -0.150 4.150 11 C -0.386 4.386 12 S 0.559 5.441 13 C -0.259 4.259 14 C 0.007 3.993 15 C -0.194 4.194 16 C -0.209 4.209 17 C -0.192 4.192 18 N -0.180 5.180 19 N -0.367 5.367 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.789 3.211 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.206 1.206 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.213 0.787 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.202 0.798 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.037 3.171 13.462 19.706 hybrid contribution -1.683 -0.349 -1.061 2.020 sum 12.354 2.822 12.401 17.731 Atomic orbital electron populations 1.21727 0.95313 1.01774 1.00326 1.21611 0.96483 0.96321 0.98205 1.21853 1.00922 0.94823 1.02242 1.20673 0.89835 0.86206 0.96840 0.92945 1.21746 0.94928 0.95571 0.88193 1.45886 1.06536 1.51609 1.30368 1.17475 0.82610 0.79672 0.83432 1.90726 1.56256 1.50767 1.48047 1.20286 0.90395 1.05196 0.99166 1.26952 1.00812 1.05790 1.05047 1.82196 1.04772 1.40645 1.16477 1.27734 0.96741 1.01733 0.99721 1.19395 0.95599 0.94015 0.90284 1.21838 0.99098 0.97344 1.01099 1.22056 0.97951 1.01544 0.99335 1.21831 0.98999 0.98798 0.99532 1.66828 1.38001 1.09646 1.03556 1.42544 1.17302 1.03280 1.73533 1.19410 0.93087 0.92170 1.30133 0.90448 1.25369 1.01362 0.96081 1.03478 1.69821 1.38401 0.99651 1.53908 0.85424 0.81115 0.76050 0.78472 1.20708 1.22853 1.20623 0.93515 0.92841 0.93247 0.93019 0.92326 0.91822 0.92285 0.89636 0.92915 0.74996 0.78685 0.92628 0.89581 0.94774 0.90522 0.88696 0.91151 0.94239 0.89621 0.91652 0.79775 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.26 71.98 0.59 -4.20 16 2 C -0.10 -3.59 2.69 -10.79 -0.03 -3.62 16 3 C -0.14 -3.74 8.84 71.98 0.64 -3.11 16 4 C 0.17 6.69 2.18 44.99 0.10 6.79 16 5 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 4.39 4.73 86.38 0.41 4.80 16 7 N -0.69 -27.14 5.38 -466.51 -2.51 -29.65 16 8 C 0.58 22.68 7.80 86.62 0.68 23.35 16 9 O -0.58 -24.14 16.71 -4.14 -0.07 -24.21 16 10 C -0.02 -0.52 6.70 40.56 0.27 -0.25 16 11 C -0.24 -6.36 10.62 67.12 0.71 -5.65 16 12 S 0.30 5.49 21.28 -56.49 -1.20 4.28 16 13 C 0.02 0.51 5.74 88.58 0.51 1.02 16 14 C 0.01 0.22 0.99 -52.93 -0.05 0.17 16 15 C -0.13 -3.21 8.45 71.98 0.61 -2.61 16 16 C -0.15 -1.79 7.53 71.98 0.54 -1.25 16 17 C -0.13 -2.66 8.45 71.98 0.61 -2.05 16 18 N -0.47 -15.39 10.10 -180.83 -1.83 -17.22 16 19 N -0.73 -35.12 4.44 -322.94 -1.43 -36.55 16 20 C -0.22 -11.37 7.57 84.03 0.64 -10.73 16 21 H 0.08 3.92 7.40 -2.91 -0.02 3.90 16 22 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 23 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 24 Si 0.96 45.69 29.55 68.60 2.03 47.72 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.05 2.14 6.01 -2.39 -0.01 2.13 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.82 6.71 -2.39 -0.02 2.81 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 17.35 7.66 -92.71 -0.71 16.64 16 38 H 0.20 4.56 8.03 -2.91 -0.02 4.54 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.72 7.91 -2.39 -0.02 0.70 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.76 7.91 -2.39 -0.02 0.74 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.37 20.05 7.80 -92.70 -0.72 19.33 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -68.17 406.09 1.47 -66.70 By element: Atomic # 1 Polarization: 48.53 SS G_CDS: -0.48 Total: 48.04 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.69 Total: -0.83 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -5.49 Total: -141.71 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.07 Total: -24.21 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.20 Total: 4.28 kcal Total: -68.17 1.47 -66.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667503938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.528 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds