Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30942 * 122.90560 * 2 1 4 4 C 1.29423 * 117.36578 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.80352 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47588 * 60.02534 * 5 4 3 7 7 C 1.53006 * 109.47128 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47157 * 300.02203 * 5 4 3 9 9 S 1.70955 * 110.39125 * 359.72552 * 4 3 2 10 10 C 1.35663 * 122.90234 * 180.02562 * 2 1 3 11 11 C 1.46677 * 126.13207 * 359.96395 * 10 2 1 12 12 O 1.21686 * 120.00312 * 0.02562 * 11 10 2 13 13 N 1.34781 * 119.99941 * 179.97438 * 11 10 2 14 14 C 1.46500 * 119.99732 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47381 * 35.00069 * 14 13 11 16 16 C 1.53006 * 109.47249 * 274.99921 * 14 13 11 17 17 C 1.52999 * 109.46944 * 155.00564 * 14 13 11 18 18 C 1.53009 * 109.46984 * 294.99645 * 17 14 13 19 19 N 1.46497 * 109.47006 * 180.02562 * 18 17 14 20 20 C 1.36937 * 119.99347 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00664 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99702 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00151 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47140 * 90.00122 * 24 22 20 26 26 H 1.48496 * 109.46950 * 210.00487 * 24 22 20 27 27 H 1.48501 * 109.47058 * 330.00318 * 24 22 20 28 28 H 1.08996 * 109.47014 * 269.95550 * 1 2 3 29 29 H 1.09001 * 109.46601 * 29.96032 * 1 2 3 30 30 H 1.08999 * 109.46654 * 149.95762 * 1 2 3 31 31 H 1.09004 * 109.47365 * 59.99659 * 6 5 4 32 32 H 1.08996 * 109.47660 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47070 * 300.00315 * 6 5 4 34 34 H 1.08999 * 109.47191 * 59.99754 * 7 5 4 35 35 H 1.08999 * 109.47256 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47324 * 300.00013 * 7 5 4 37 37 H 1.08997 * 109.47117 * 60.00133 * 8 5 4 38 38 H 1.08999 * 109.47380 * 180.02562 * 8 5 4 39 39 H 1.08999 * 109.47155 * 300.00241 * 8 5 4 40 40 H 0.96998 * 119.99903 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.47002 * 60.00085 * 16 14 13 42 42 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47050 * 300.00351 * 16 14 13 44 44 H 1.08997 * 109.47756 * 54.99315 * 17 14 13 45 45 H 1.09001 * 109.47317 * 175.00198 * 17 14 13 46 46 H 1.08999 * 109.47112 * 300.00392 * 18 17 14 47 47 H 1.09001 * 109.46642 * 60.00139 * 18 17 14 48 48 H 0.96996 * 120.00415 * 0.02562 * 19 18 17 49 49 H 0.97010 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4821 2.1230 0.0000 6 6 4.2635 2.9774 1.2501 7 6 5.9118 1.5778 -0.0015 8 6 4.2618 2.9798 -1.2484 9 16 3.9448 -0.6780 0.0066 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0004 12 8 0.5174 -2.6998 -0.0002 13 7 2.5680 -3.5556 -0.0015 14 6 2.0438 -4.9236 -0.0019 15 1 1.1274 -4.9614 -0.5908 16 6 1.7447 -5.3557 1.4351 17 6 3.0818 -5.8673 -0.6125 18 6 3.2888 -5.5127 -2.0865 19 7 4.2822 -6.4167 -2.6713 20 6 4.6319 -6.2892 -3.9892 21 1 4.1757 -5.5221 -4.5972 22 6 5.5736 -7.1454 -4.5433 23 7 6.1300 -8.0800 -3.8022 24 14 6.0512 -6.9711 -6.3408 25 1 7.1975 -6.0346 -6.4599 26 1 6.4386 -8.2990 -6.8810 27 1 4.8971 -6.4412 -7.1105 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3632 0.8904 -0.5132 30 1 -0.3632 -0.8896 -0.5145 31 1 4.4205 2.3670 2.1395 32 1 4.9694 3.8079 1.2507 33 1 3.2451 3.3658 1.2512 34 1 6.0676 0.9691 -0.8922 35 1 6.6174 2.4086 -0.0017 36 1 6.0689 0.9674 0.8877 37 1 3.2434 3.3681 -1.2473 38 1 4.9677 3.8103 -1.2483 39 1 4.4176 2.3710 -2.1390 40 1 3.5260 -3.4033 -0.0019 41 1 1.0053 -4.6834 1.8702 42 1 1.3552 -6.3736 1.4348 43 1 2.6612 -5.3179 2.0240 44 1 4.0260 -5.7638 -0.0780 45 1 2.7296 -6.8957 -0.5323 46 1 2.3446 -5.6161 -2.6211 47 1 3.6410 -4.4843 -2.1667 48 1 4.6917 -7.1059 -2.1254 49 1 6.7878 -8.6786 -4.1895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668330871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = -8.596021 kcal Electronic energy + Delta-G solvation = -27186.497068 eV Core-core repulsion = 23467.800496 eV Total energy + Delta-G solvation = -3718.696572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62241 -39.53202 -37.22315 -36.44095 -34.38718 -32.15770 -31.49929 -30.73427 -28.19231 -27.88234 -27.83993 -27.65518 -25.24265 -24.08502 -22.59216 -21.38789 -20.61842 -20.37729 -19.43273 -17.94855 -17.22504 -16.70078 -16.21871 -15.70707 -15.35933 -14.88365 -14.61484 -14.43895 -14.18906 -14.05214 -13.85847 -13.67157 -13.47457 -13.34406 -12.89449 -12.86014 -12.79247 -12.58779 -12.45295 -12.34035 -12.07373 -11.91426 -11.82275 -11.49016 -11.40910 -11.31795 -11.22443 -11.03822 -10.81429 -10.67590 -10.58515 -10.12111 -10.05890 -9.76747 -9.71725 -9.64559 -9.12603 -8.89957 -8.84284 -6.94154 -5.78190 -3.06964 0.08174 0.98834 1.41989 2.29177 3.06993 3.12912 3.42486 3.47858 3.49698 3.59360 4.29739 4.46797 4.53457 4.55571 4.70739 4.87141 4.90122 5.02637 5.15725 5.21628 5.22701 5.32177 5.35656 5.45196 5.48062 5.49124 5.53672 5.56442 5.62282 5.69206 5.71603 5.72256 5.74979 5.88343 5.90013 5.91206 5.99375 6.19431 6.21877 6.25664 6.31473 6.48342 6.78865 6.83592 7.36863 7.50018 7.69049 8.11181 8.40819 9.51994 10.09281 10.44232 11.44713 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.002944 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.394178 B = 9508.072286 C =11270.616689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.149 3.851 3 N -0.475 5.475 4 C 0.073 3.927 5 C 0.008 3.992 6 C -0.134 4.134 7 C -0.158 4.158 8 C -0.135 4.135 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.599 3.401 12 O -0.527 6.527 13 N -0.713 5.713 14 C 0.146 3.854 15 H 0.092 0.908 16 C -0.161 4.161 17 C -0.136 4.136 18 C 0.154 3.846 19 N -0.733 5.733 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.398 0.602 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 21.144 13.783 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.011 3.989 3 N -0.190 5.190 4 C -0.203 4.203 5 C 0.004 3.996 6 C -0.193 4.193 7 C -0.216 4.216 8 C -0.194 4.194 9 S 0.431 5.569 10 C -0.429 4.429 11 C 0.385 3.615 12 O -0.406 6.406 13 N -0.364 5.364 14 C 0.042 3.958 15 H 0.110 0.890 16 C -0.219 4.219 17 C -0.174 4.174 18 C 0.026 3.974 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.233 0.767 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.473 20.969 13.611 25.396 hybrid contribution 0.148 -0.153 -0.867 0.893 sum -4.325 20.815 12.744 24.787 Atomic orbital electron populations 1.20651 0.86065 1.04485 1.03520 1.20642 0.98556 0.84900 0.94820 1.65965 1.04282 1.31248 1.17461 1.27450 0.94277 0.98034 1.00495 1.19328 0.91315 0.90621 0.98351 1.21843 1.03018 0.99089 0.95301 1.22075 0.94305 1.02170 1.03077 1.21853 1.02998 0.99104 0.95430 1.84001 1.04993 1.02066 1.65879 1.25555 0.96626 0.99186 1.21557 1.16639 0.86171 0.82390 0.76327 1.90764 1.14215 1.84980 1.50639 1.46039 1.09574 1.06122 1.74653 1.21046 0.98354 0.79624 0.96799 0.88982 1.22167 1.01792 1.01791 0.96187 1.22082 0.98348 0.99303 0.97662 1.20633 0.92894 0.93737 0.90122 1.42355 1.47503 1.38095 1.09808 1.19228 1.18049 1.12851 0.86922 0.91266 1.24739 0.99741 0.98345 0.98157 1.69661 1.31855 1.21502 1.35254 0.86192 0.78327 0.76839 0.84876 1.21695 1.21718 1.20740 0.90290 0.90906 0.88089 0.92439 0.91388 0.91358 0.91426 0.90354 0.91655 0.91348 0.91380 0.92238 0.76697 0.92303 0.91299 0.92505 0.91336 0.89967 0.96339 0.96525 0.78299 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.69 36.01 0.35 -0.67 16 2 C 0.15 1.94 6.79 -83.89 -0.57 1.37 16 3 N -0.48 -5.84 10.48 -7.70 -0.08 -5.92 16 4 C 0.07 0.77 5.78 -13.30 -0.08 0.70 16 5 C 0.01 0.06 0.99 -155.66 -0.15 -0.09 16 6 C -0.13 -0.91 8.45 37.16 0.31 -0.59 16 7 C -0.16 -1.03 7.53 37.16 0.28 -0.75 16 8 C -0.14 -1.00 8.45 37.16 0.31 -0.68 16 9 S 0.17 1.84 20.68 -107.50 -2.22 -0.39 16 10 C -0.31 -4.05 6.48 -37.10 -0.24 -4.29 16 11 C 0.60 8.73 7.74 -12.85 -0.10 8.63 16 12 O -0.53 -8.72 13.93 5.20 0.07 -8.65 16 13 N -0.71 -9.59 4.53 -55.11 -0.25 -9.84 16 14 C 0.15 1.99 2.57 -67.93 -0.17 1.82 16 15 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 16 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 17 C -0.14 -2.09 4.87 -26.73 -0.13 -2.22 16 18 C 0.15 3.09 6.15 -4.04 -0.02 3.07 16 19 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 20 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.47 7.93 -51.93 -0.41 0.06 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.41 7.91 -51.93 -0.41 0.00 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 4.95 7.79 -40.82 -0.32 4.63 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 48 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -32.69 410.52 -9.49 -42.17 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.45 Total: 8.07 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.11 Total: -2.66 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.06 Total: -62.22 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.22 Total: -0.39 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.69 -9.49 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668330871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.577 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds