Wall clock time and date at job start Tue Mar 31 2020 22:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30942 * 122.90560 * 2 1 4 4 C 1.29423 * 117.36578 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.80352 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47588 * 60.02534 * 5 4 3 7 7 C 1.53006 * 109.47128 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47157 * 300.02203 * 5 4 3 9 9 S 1.70955 * 110.39125 * 359.72552 * 4 3 2 10 10 C 1.35663 * 122.90234 * 180.02562 * 2 1 3 11 11 C 1.46677 * 126.13207 * 359.96395 * 10 2 1 12 12 O 1.21686 * 120.00312 * 0.02562 * 11 10 2 13 13 N 1.34781 * 119.99941 * 179.97438 * 11 10 2 14 14 C 1.46500 * 119.99732 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47381 * 35.00069 * 14 13 11 16 16 C 1.53006 * 109.47249 * 274.99921 * 14 13 11 17 17 C 1.52999 * 109.46944 * 155.00564 * 14 13 11 18 18 C 1.53009 * 109.46984 * 294.99645 * 17 14 13 19 19 N 1.46497 * 109.47006 * 180.02562 * 18 17 14 20 20 C 1.36937 * 119.99347 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00664 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99702 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00151 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47140 * 90.00122 * 24 22 20 26 26 H 1.48496 * 109.46950 * 210.00487 * 24 22 20 27 27 H 1.48501 * 109.47058 * 330.00318 * 24 22 20 28 28 H 1.08996 * 109.47014 * 269.95550 * 1 2 3 29 29 H 1.09001 * 109.46601 * 29.96032 * 1 2 3 30 30 H 1.08999 * 109.46654 * 149.95762 * 1 2 3 31 31 H 1.09004 * 109.47365 * 59.99659 * 6 5 4 32 32 H 1.08996 * 109.47660 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47070 * 300.00315 * 6 5 4 34 34 H 1.08999 * 109.47191 * 59.99754 * 7 5 4 35 35 H 1.08999 * 109.47256 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47324 * 300.00013 * 7 5 4 37 37 H 1.08997 * 109.47117 * 60.00133 * 8 5 4 38 38 H 1.08999 * 109.47380 * 180.02562 * 8 5 4 39 39 H 1.08999 * 109.47155 * 300.00241 * 8 5 4 40 40 H 0.96998 * 119.99903 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.47002 * 60.00085 * 16 14 13 42 42 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47050 * 300.00351 * 16 14 13 44 44 H 1.08997 * 109.47756 * 54.99315 * 17 14 13 45 45 H 1.09001 * 109.47317 * 175.00198 * 17 14 13 46 46 H 1.08999 * 109.47112 * 300.00392 * 18 17 14 47 47 H 1.09001 * 109.46642 * 60.00139 * 18 17 14 48 48 H 0.96996 * 120.00415 * 0.02562 * 19 18 17 49 49 H 0.97010 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4821 2.1230 0.0000 6 6 4.2635 2.9774 1.2501 7 6 5.9118 1.5778 -0.0015 8 6 4.2618 2.9798 -1.2484 9 16 3.9448 -0.6780 0.0066 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0004 12 8 0.5174 -2.6998 -0.0002 13 7 2.5680 -3.5556 -0.0015 14 6 2.0438 -4.9236 -0.0019 15 1 1.1274 -4.9614 -0.5908 16 6 1.7447 -5.3557 1.4351 17 6 3.0818 -5.8673 -0.6125 18 6 3.2888 -5.5127 -2.0865 19 7 4.2822 -6.4167 -2.6713 20 6 4.6319 -6.2892 -3.9892 21 1 4.1757 -5.5221 -4.5972 22 6 5.5736 -7.1454 -4.5433 23 7 6.1300 -8.0800 -3.8022 24 14 6.0512 -6.9711 -6.3408 25 1 7.1975 -6.0346 -6.4599 26 1 6.4386 -8.2990 -6.8810 27 1 4.8971 -6.4412 -7.1105 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3632 0.8904 -0.5132 30 1 -0.3632 -0.8896 -0.5145 31 1 4.4205 2.3670 2.1395 32 1 4.9694 3.8079 1.2507 33 1 3.2451 3.3658 1.2512 34 1 6.0676 0.9691 -0.8922 35 1 6.6174 2.4086 -0.0017 36 1 6.0689 0.9674 0.8877 37 1 3.2434 3.3681 -1.2473 38 1 4.9677 3.8103 -1.2483 39 1 4.4176 2.3710 -2.1390 40 1 3.5260 -3.4033 -0.0019 41 1 1.0053 -4.6834 1.8702 42 1 1.3552 -6.3736 1.4348 43 1 2.6612 -5.3179 2.0240 44 1 4.0260 -5.7638 -0.0780 45 1 2.7296 -6.8957 -0.5323 46 1 2.3446 -5.6161 -2.6211 47 1 3.6410 -4.4843 -2.1667 48 1 4.6917 -7.1059 -2.1254 49 1 6.7878 -8.6786 -4.1895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668330871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:15 Heat of formation + Delta-G solvation = -29.083112 kcal Electronic energy + Delta-G solvation = -27187.385455 eV Core-core repulsion = 23467.800496 eV Total energy + Delta-G solvation = -3719.584958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59303 -40.57677 -38.09917 -37.59496 -36.14451 -33.72155 -32.66042 -32.09333 -29.52993 -29.08910 -28.36853 -28.20525 -26.08483 -25.89321 -23.87167 -22.94544 -21.78685 -21.13480 -20.45327 -19.19536 -18.82746 -17.82105 -17.28015 -16.76250 -16.60247 -16.21241 -15.74560 -15.49664 -15.34911 -15.20988 -15.04498 -14.93188 -14.78389 -14.48230 -14.30495 -13.69989 -13.64101 -13.58428 -13.16611 -13.11061 -12.99575 -12.91083 -12.88732 -12.63241 -12.54489 -12.41720 -12.30700 -12.28455 -12.03018 -12.00468 -11.97177 -11.94253 -11.67142 -11.18066 -10.96758 -10.72175 -10.59457 -10.21036 -9.79152 -9.03195 -7.97779 -5.26967 -0.85180 0.10142 0.50946 1.32212 1.46213 1.47558 1.56278 1.98862 2.05927 2.53830 2.81153 3.35755 3.54394 3.60503 3.74660 3.89195 3.90067 4.00271 4.04030 4.12582 4.23135 4.36213 4.53214 4.59556 4.62927 4.66228 4.69249 4.71911 4.73412 4.81199 4.82759 4.83078 4.93887 4.94635 4.96220 5.01128 5.13827 5.20630 5.23580 5.26055 5.30807 5.33601 5.37436 5.46242 5.47435 6.24599 6.31219 6.54955 7.00778 7.31496 8.05623 8.30633 9.25428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.002944 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.394178 B = 9508.072286 C =11270.616689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.143 3.857 3 N -0.492 5.492 4 C 0.078 3.922 5 C 0.005 3.995 6 C -0.130 4.130 7 C -0.159 4.159 8 C -0.133 4.133 9 S 0.197 5.803 10 C -0.335 4.335 11 C 0.598 3.402 12 O -0.554 6.554 13 N -0.710 5.710 14 C 0.152 3.848 15 H 0.076 0.924 16 C -0.153 4.153 17 C -0.120 4.120 18 C 0.154 3.846 19 N -0.744 5.744 20 C -0.250 4.250 21 H 0.070 0.930 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.273 1.273 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.404 0.596 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.018 0.982 48 H 0.376 0.624 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 22.600 14.152 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 N -0.206 5.206 4 C -0.198 4.198 5 C 0.001 3.999 6 C -0.189 4.189 7 C -0.217 4.217 8 C -0.192 4.192 9 S 0.458 5.542 10 C -0.459 4.459 11 C 0.384 3.616 12 O -0.434 6.434 13 N -0.361 5.361 14 C 0.048 3.952 15 H 0.095 0.905 16 C -0.211 4.211 17 C -0.158 4.158 18 C 0.027 3.973 19 N -0.387 5.387 20 C -0.382 4.382 21 H 0.087 0.913 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.800 3.200 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.198 1.198 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.239 0.761 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.026 0.974 47 H 0.036 0.964 48 H 0.209 0.791 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.425 22.445 13.990 26.669 hybrid contribution -0.179 -0.515 -0.970 1.113 sum -3.604 21.930 13.020 25.757 Atomic orbital electron populations 1.20608 0.85647 1.04164 1.03911 1.20899 0.99222 0.85188 0.94309 1.66030 1.04996 1.30932 1.18650 1.28136 0.94370 0.98878 0.98375 1.19565 0.91339 0.89890 0.99134 1.21835 1.02992 0.99545 0.94529 1.22114 0.93682 1.02983 1.02886 1.21855 1.03016 0.99586 0.94726 1.83831 1.03010 1.01947 1.65421 1.25513 0.98356 0.98576 1.23457 1.16821 0.85910 0.83031 0.75811 1.90744 1.15255 1.85504 1.51937 1.46008 1.09793 1.05910 1.74359 1.20941 0.96950 0.79410 0.97912 0.90547 1.22089 1.02276 1.02269 0.94451 1.21923 0.99424 0.99945 0.94500 1.20746 0.90953 0.92788 0.92770 1.42531 1.48350 1.38710 1.09125 1.19575 1.17760 1.12541 0.88281 0.91251 1.25539 1.00134 0.98366 1.02304 1.69802 1.32547 1.22382 1.36920 0.85174 0.78163 0.76602 0.80031 1.21035 1.21905 1.19827 0.89514 0.89775 0.89700 0.92526 0.89026 0.92561 0.92044 0.88122 0.91407 0.92517 0.88964 0.93088 0.76068 0.92917 0.90009 0.91242 0.90338 0.89482 0.97375 0.96427 0.79134 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.69 71.24 0.69 -1.30 16 2 C 0.14 3.73 6.79 42.10 0.29 4.01 16 3 N -0.49 -11.86 10.48 -178.29 -1.87 -13.73 16 4 C 0.08 1.57 5.78 88.46 0.51 2.08 16 5 C 0.00 0.06 0.99 -52.93 -0.05 0.01 16 6 C -0.13 -1.49 8.45 71.98 0.61 -0.89 16 7 C -0.16 -1.68 7.53 71.98 0.54 -1.14 16 8 C -0.13 -1.73 8.45 71.98 0.61 -1.12 16 9 S 0.20 4.08 20.68 -56.49 -1.17 2.91 16 10 C -0.34 -8.89 6.48 23.88 0.15 -8.74 16 11 C 0.60 17.57 7.74 86.45 0.67 18.24 16 12 O -0.55 -18.73 13.93 -4.30 -0.06 -18.79 16 13 N -0.71 -18.83 4.53 -446.49 -2.02 -20.85 16 14 C 0.15 4.06 2.57 44.99 0.12 4.18 16 15 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 16 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 17 C -0.12 -3.59 4.87 30.60 0.15 -3.44 16 18 C 0.15 6.18 6.15 86.38 0.53 6.71 16 19 N -0.74 -37.84 5.60 -343.45 -1.92 -39.76 16 20 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 23 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 24 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.29 6.01 -2.39 -0.01 2.28 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.74 7.93 -2.39 -0.02 0.72 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.69 7.91 -2.39 -0.02 0.67 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.40 9.74 7.79 -92.71 -0.72 9.01 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.02 0.71 7.75 -2.39 -0.02 0.70 16 48 H 0.38 19.96 7.67 -92.71 -0.71 19.25 16 49 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -69.76 410.52 1.59 -68.18 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.49 Total: 33.18 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.80 Total: -0.94 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -5.53 Total: -132.66 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.17 Total: 2.91 kcal Total: -69.76 1.59 -68.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668330871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.093 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds